Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 77 - 147 | 7.9e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 211 |
| AccII | CGCG | 1 cut(s) | 187 |
| AciI | CCGC | 2 cut(s) | 185, 187 |
| AclWI | GGATC | 2 cut(s) | 29, 71 |
| AcoI | YGGCCR | 1 cut(s) | 441 |
| AcsI | RAATTY | 1 cut(s) | 279 |
| AcvI | CACGTG | 1 cut(s) | 74 |
| AfaI | GTAC | 2 cut(s) | 97, 436 |
| AflIII | ACRYGT | 1 cut(s) | 412 |
| AluBI | AGCT | 4 cut(s) | 123, 152, 242, 361 |
| AluI | AGCT | 4 cut(s) | 123, 152, 242, 361 |
| Alw21I | GWGCWC | 1 cut(s) | 464 |
| Alw26I | GTCTC | 1 cut(s) | 348 |
| Alw44I | GTGCAC | 1 cut(s) | 460 |
| AlwI | GGATC | 2 cut(s) | 29, 71 |
| Ama87I | CYCGRG | 1 cut(s) | 153 |
| AoxI | GGCC | 2 cut(s) | 188, 441 |
| ApaLI | GTGCAC | 1 cut(s) | 460 |
| ApeKI | GCWGC | 3 cut(s) | 120, 239, 311 |
| ApoI | RAATTY | 1 cut(s) | 279 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 141 |
| AvaI | CYCGRG | 1 cut(s) | 153 |
| BaeGI | GKGCMC | 1 cut(s) | 464 |
| BalI | TGGCCA | 1 cut(s) | 443 |
| BbrPI | CACGTG | 1 cut(s) | 74 |
| Bbv12I | GWGCWC | 1 cut(s) | 464 |
| BbvCI | CCTCAGC | 1 cut(s) | 450 |
| BbvI | GCAGC | 3 cut(s) | 132, 251, 323 |
| BccI | CCATC | 1 cut(s) | 189 |
| BclI | TGATCA | 1 cut(s) | 18 |
| BcoDI | GTCTC | 1 cut(s) | 348 |
| BfaI | CTAG | 1 cut(s) | 321 |
| BfuAI | ACCTGC | 1 cut(s) | 211 |
| BisI | GCNGC | 4 cut(s) | 121, 188, 240, 312 |
| BlsI | GCNGC | 4 cut(s) | 122, 189, 241, 313 |
| BmeT110I | CYCGRG | 1 cut(s) | 153 |
| BmiI | GGNNCC | 1 cut(s) | 26 |
| BmsI | GCATC | 3 cut(s) | 226, 280, 302 |
| BpmI | CTGGAG | 1 cut(s) | 104 |
| Bpu10I | CCTNAGC | 1 cut(s) | 450 |
| BpuEI | CTTGAG | 1 cut(s) | 87 |
| BsaAI | YACGTR | 1 cut(s) | 74 |
| BsaJI | CCNNGG | 4 cut(s) | 28, 185, 261, 438 |
| BsaWI | WCCGGW | 1 cut(s) | 37 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 24, 54, 77, 107 |
| Bse1I | ACTGG | 2 cut(s) | 87, 326 |
| Bse3DI | GCAATG | 1 cut(s) | 444 |
| BseDI | CCNNGG | 4 cut(s) | 28, 185, 261, 438 |
| BseGI | GGATG | 1 cut(s) | 181 |
| BseMI | GCAATG | 1 cut(s) | 444 |
| BseMII | CTCAG | 4 cut(s) | 81, 107, 198, 441 |
| BseNI | ACTGG | 2 cut(s) | 87, 326 |
| BseSI | GKGCMC | 1 cut(s) | 464 |
| BseXI | GCAGC | 3 cut(s) | 132, 251, 323 |
| Bsh1236I | CGCG | 1 cut(s) | 187 |
| BshFI | GGCC | 2 cut(s) | 190, 443 |
| BsiHKAI | GWGCWC | 1 cut(s) | 464 |
| BsiHKCI | CYCGRG | 1 cut(s) | 153 |
| BsiSI | CCGG | 1 cut(s) | 38 |
| BsmAI | GTCTC | 1 cut(s) | 348 |
| BsnI | GGCC | 2 cut(s) | 190, 443 |
| BsoBI | CYCGRG | 1 cut(s) | 153 |
| Bsp1286I | GDGCHC | 1 cut(s) | 464 |
| Bsp143I | GATC | 3 cut(s) | 18, 34, 76 |
| BspACI | CCGC | 2 cut(s) | 185, 187 |
| BspANI | GGCC | 2 cut(s) | 190, 443 |
| BspCNI | CTCAG | 4 cut(s) | 82, 108, 199, 442 |
| BspFNI | CGCG | 1 cut(s) | 187 |
| BspLI | GGNNCC | 1 cut(s) | 26 |
| BspMI | ACCTGC | 1 cut(s) | 211 |
| BspPI | GGATC | 2 cut(s) | 29, 71 |
| BsrDI | GCAATG | 1 cut(s) | 444 |
| BsrI | ACTGG | 2 cut(s) | 87, 326 |
| BssECI | CCNNGG | 4 cut(s) | 28, 185, 261, 438 |
| BssMI | GATC | 3 cut(s) | 18, 34, 76 |
| BssT1I | CCWWGG | 3 cut(s) | 28, 261, 438 |
| Bst6I | CTCTTC | 2 cut(s) | 132, 405 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 317 |
| BstBAI | YACGTR | 1 cut(s) | 74 |
| BstDEI | CTNAG | 4 cut(s) | 90, 116, 207, 450 |
| BstDSI | CCRYGG | 1 cut(s) | 185 |
| BstF5I | GGATG | 1 cut(s) | 181 |
| BstFNI | CGCG | 1 cut(s) | 187 |
| BstKTI | GATC | 3 cut(s) | 21, 37, 79 |
| BstMAI | GTCTC | 1 cut(s) | 348 |
| BstMBI | GATC | 3 cut(s) | 18, 34, 76 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 317, 374 |
| BstNSI | RCATGY | 1 cut(s) | 416 |
| BstSLI | GKGCMC | 1 cut(s) | 464 |
| BstUI | CGCG | 1 cut(s) | 187 |
| BstV1I | GCAGC | 3 cut(s) | 132, 251, 323 |
| BstX2I | RGATCY | 1 cut(s) | 34 |
| BstYI | RGATCY | 1 cut(s) | 34 |
| BsuRI | GGCC | 2 cut(s) | 190, 443 |
| BtgI | CCRYGG | 1 cut(s) | 185 |
| BtsCI | GGATG | 1 cut(s) | 181 |
| BtsIMutI | CAGTG | 2 cut(s) | 80, 333 |
| BveI | ACCTGC | 1 cut(s) | 211 |
| Cfr42I | CCGCGG | 1 cut(s) | 188 |
| Csp6I | GTAC | 2 cut(s) | 96, 435 |
| CviAII | CATG | 2 cut(s) | 129, 413 |
| CviQI | GTAC | 2 cut(s) | 96, 435 |
| DdeI | CTNAG | 4 cut(s) | 90, 116, 207, 450 |
| DpnI | GATC | 3 cut(s) | 20, 36, 78 |
| DpnII | GATC | 3 cut(s) | 18, 34, 76 |
| DraI | TTTAAA | 1 cut(s) | 223 |
| EaeI | YGGCCR | 1 cut(s) | 441 |
| Eam1104I | CTCTTC | 2 cut(s) | 132, 405 |
| EarI | CTCTTC | 2 cut(s) | 132, 405 |
| Eco130I | CCWWGG | 3 cut(s) | 28, 261, 438 |
| Eco72I | CACGTG | 1 cut(s) | 74 |
| Eco88I | CYCGRG | 1 cut(s) | 153 |
| EcoT14I | CCWWGG | 3 cut(s) | 28, 261, 438 |
| EcoT22I | ATGCAT | 1 cut(s) | 295 |
| ErhI | CCWWGG | 3 cut(s) | 28, 261, 438 |
| FaeI | CATG | 2 cut(s) | 132, 416 |
| FaiI | YATR | 7 cut(s) | 130, 334, 336, 365, 405, 407, 414 |
| FatI | CATG | 2 cut(s) | 128, 412 |
| FauNDI | CATATG | 1 cut(s) | 334 |
| FbaI | TGATCA | 1 cut(s) | 18 |
| Fnu4HI | GCNGC | 4 cut(s) | 121, 188, 240, 312 |
| FokI | GGATG | 1 cut(s) | 168 |
| Fsp4HI | GCNGC | 4 cut(s) | 121, 188, 240, 312 |
| FspBI | CTAG | 1 cut(s) | 321 |
| GluI | GCNGC | 4 cut(s) | 121, 188, 240, 312 |
| GsuI | CTGGAG | 1 cut(s) | 104 |
| HaeIII | GGCC | 2 cut(s) | 190, 443 |
| HapII | CCGG | 1 cut(s) | 38 |
| Hin1II | CATG | 2 cut(s) | 132, 416 |
| HinfI | GANTC | 2 cut(s) | 162, 341 |
| HpaII | CCGG | 1 cut(s) | 38 |
| Hpy166II | GTNNAC | 2 cut(s) | 96, 462 |
| Hpy188I | TCNGA | 2 cut(s) | 147, 348 |
| Hpy188III | TCNNGA | 2 cut(s) | 104, 297 |
| Hpy8I | GTNNAC | 2 cut(s) | 96, 462 |
| HpyCH4IV | ACGT | 1 cut(s) | 73 |
| HpyCH4V | TGCA | 4 cut(s) | 239, 293, 338, 462 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 317, 374 |
| HpyF3I | CTNAG | 4 cut(s) | 90, 116, 207, 450 |
| HpySE526I | ACGT | 1 cut(s) | 73 |
| Hsp92II | CATG | 2 cut(s) | 132, 416 |
| Ksp22I | TGATCA | 1 cut(s) | 18 |
| KspI | CCGCGG | 1 cut(s) | 188 |
| Kzo9I | GATC | 3 cut(s) | 18, 34, 76 |
| LpnPI | CCDG | 8 cut(s) | 7, 27, 51, 68, 216, 282, 339, 363 |
| Lsp1109I | GCAGC | 3 cut(s) | 132, 251, 323 |
| LweI | GCATC | 3 cut(s) | 226, 280, 302 |
| MaeI | CTAG | 1 cut(s) | 321 |
| MaeII | ACGT | 1 cut(s) | 73 |
| MaeIII | GTNAC | 1 cut(s) | 328 |
| MalI | GATC | 3 cut(s) | 20, 36, 78 |
| MboI | GATC | 3 cut(s) | 18, 34, 76 |
| MboII | GAAGA | 3 cut(s) | 149, 312, 392 |
| MflI | RGATCY | 1 cut(s) | 34 |
| MhlI | GDGCHC | 1 cut(s) | 464 |
| MlsI | TGGCCA | 1 cut(s) | 443 |
| MluCI | AATT | 2 cut(s) | 279, 369 |
| MluNI | TGGCCA | 1 cut(s) | 443 |
| MlyI | GAGTC | 2 cut(s) | 171, 350 |
| MmeI | TCCRAC | 1 cut(s) | 253 |
| MnlI | CCTC | 6 cut(s) | 79, 149, 201, 260, 269, 445 |
| Mox20I | TGGCCA | 1 cut(s) | 443 |
| Mph1103I | ATGCAT | 1 cut(s) | 295 |
| MroXI | GAANNNNTTC | 1 cut(s) | 141 |
| MscI | TGGCCA | 1 cut(s) | 443 |
| MseI | TTAA | 2 cut(s) | 222, 502 |
| Msp20I | TGGCCA | 1 cut(s) | 443 |
| MspA1I | CMGCKG | 1 cut(s) | 187 |
| MspI | CCGG | 1 cut(s) | 38 |
| MssI | GTTTAAAC | 1 cut(s) | 223 |
| MvnI | CGCG | 1 cut(s) | 187 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 317, 374 |
| NdeI | CATATG | 1 cut(s) | 334 |
| NdeII | GATC | 3 cut(s) | 18, 34, 76 |
| NlaIII | CATG | 2 cut(s) | 132, 416 |
| NlaIV | GGNNCC | 1 cut(s) | 26 |
| NmuCI | GTSAC | 1 cut(s) | 328 |
| NsiI | ATGCAT | 1 cut(s) | 295 |
| NspI | RCATGY | 1 cut(s) | 416 |
| PaeR7I | CTCGAG | 1 cut(s) | 153 |
| PciI | ACATGT | 1 cut(s) | 412 |
| PdmI | GAANNNNTTC | 1 cut(s) | 141 |
| PkrI | GCNGC | 4 cut(s) | 122, 189, 241, 313 |
| PleI | GAGTC | 2 cut(s) | 170, 349 |
| PmaCI | CACGTG | 1 cut(s) | 74 |
| PmeI | GTTTAAAC | 1 cut(s) | 223 |
| PmlI | CACGTG | 1 cut(s) | 74 |
| PpsI | GAGTC | 2 cut(s) | 170, 349 |
| Ppu21I | YACGTR | 1 cut(s) | 74 |
| PscI | ACATGT | 1 cut(s) | 412 |
| PspCI | CACGTG | 1 cut(s) | 74 |
| PspN4I | GGNNCC | 1 cut(s) | 26 |
| PspXI | VCTCGAGB | 1 cut(s) | 153 |
| PsuI | RGATCY | 1 cut(s) | 34 |
| RsaI | GTAC | 2 cut(s) | 97, 436 |
| RsaNI | GTAC | 2 cut(s) | 96, 435 |
| SacII | CCGCGG | 1 cut(s) | 188 |
| SaqAI | TTAA | 2 cut(s) | 222, 502 |
| SatI | GCNGC | 4 cut(s) | 121, 188, 240, 312 |
| Sau3AI | GATC | 3 cut(s) | 18, 34, 76 |
| SchI | GAGTC | 2 cut(s) | 171, 350 |
| SduI | GDGCHC | 1 cut(s) | 464 |
| SetI | ASST | 9 cut(s) | 26, 76, 125, 154, 160, 205, 244, 363, 440 |
| SfaNI | GCATC | 3 cut(s) | 226, 280, 302 |
| Sfr274I | CTCGAG | 1 cut(s) | 153 |
| Sfr303I | CCGCGG | 1 cut(s) | 188 |
| SgrBI | CCGCGG | 1 cut(s) | 188 |
| SlaI | CTCGAG | 1 cut(s) | 153 |
| SmlI | CTYRAG | 2 cut(s) | 102, 153 |
| SmoI | CTYRAG | 2 cut(s) | 102, 153 |
| Sse9I | AATT | 2 cut(s) | 279, 369 |
| SsiI | CCGC | 2 cut(s) | 185, 187 |
| SspMI | CTAG | 1 cut(s) | 321 |
| StyI | CCWWGG | 3 cut(s) | 28, 261, 438 |
| TaiI | ACGT | 1 cut(s) | 76 |
| TaqI | TCGA | 3 cut(s) | 135, 154, 193 |
| TasI | AATT | 2 cut(s) | 279, 369 |
| TatI | WGTACW | 1 cut(s) | 95 |
| TauI | GCSGC | 1 cut(s) | 190 |
| Tru1I | TTAA | 2 cut(s) | 222, 502 |
| Tru9I | TTAA | 2 cut(s) | 222, 502 |
| TscAI | CASTG | 2 cut(s) | 87, 333 |
| TseFI | GTSAC | 1 cut(s) | 328 |
| TseI | GCWGC | 3 cut(s) | 120, 239, 311 |
| Tsp45I | GTSAC | 1 cut(s) | 328 |
| TspDTI | ATGAA | 1 cut(s) | 392 |
| TspRI | CASTG | 2 cut(s) | 87, 333 |
| VneI | GTGCAC | 1 cut(s) | 460 |
| XapI | RAATTY | 1 cut(s) | 279 |
| XceI | RCATGY | 1 cut(s) | 416 |
| XhoI | CTCGAG | 1 cut(s) | 153 |
| XmnI | GAANNNNTTC | 1 cut(s) | 141 |
| XspI | CTAG | 1 cut(s) | 321 |
| Zsp2I | ATGCAT | 1 cut(s) | 295 |