Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 602 |
| Acc36I | ACCTGC | 3 cut(s) | 602, 1046, 1079 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 93, 886, 1158 |
| AccI | GTMKAC | 1 cut(s) | 1119 |
| AciI | CCGC | 3 cut(s) | 83, 451, 999 |
| AcoI | YGGCCR | 1 cut(s) | 84 |
| AfaI | GTAC | 2 cut(s) | 505, 800 |
| AfeI | AGCGCT | 1 cut(s) | 1103 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 70, 93, 175, 596, 840, 886, 1036, 1088, 1158 |
| AgsI | TTSAA | 1 cut(s) | 391 |
| AhlI | ACTAGT | 1 cut(s) | 500 |
| AjiI | CACGTC | 1 cut(s) | 1114 |
| AjnI | CCWGG | 3 cut(s) | 281, 735, 1157 |
| AluBI | AGCT | 5 cut(s) | 103, 319, 385, 409, 965 |
| AluI | AGCT | 5 cut(s) | 103, 319, 385, 409, 965 |
| Alw21I | GWGCWC | 1 cut(s) | 228 |
| Alw26I | GTCTC | 1 cut(s) | 719 |
| Aor51HI | AGCGCT | 1 cut(s) | 1103 |
| AoxI | GGCC | 7 cut(s) | 84, 477, 864, 876, 988, 1011, 1160 |
| ApeKI | GCWGC | 5 cut(s) | 953, 962, 1067, 1099, 1104 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 9 |
| AspLEI | GCGC | 2 cut(s) | 1004, 1104 |
| AspS9I | GGNCC | 4 cut(s) | 877, 1011, 1145, 1161 |
| AsuHPI | GGTGA | 3 cut(s) | 248, 616, 1068 |
| AvaII | GGWCC | 1 cut(s) | 1145 |
| BanII | GRGCYC | 1 cut(s) | 622 |
| Bbv12I | GWGCWC | 1 cut(s) | 228 |
| BbvI | GCAGC | 5 cut(s) | 940, 974, 1079, 1091, 1111 |
| BccI | CCATC | 4 cut(s) | 178, 335, 570, 1136 |
| BceAI | ACGGC | 1 cut(s) | 1012 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 791, 825, 1096, 1130 |
| BciT130I | CCWGG | 3 cut(s) | 283, 737, 1159 |
| BciVI | GTATCC | 1 cut(s) | 837 |
| BclI | TGATCA | 1 cut(s) | 1044 |
| BcoDI | GTCTC | 1 cut(s) | 719 |
| BcuI | ACTAGT | 1 cut(s) | 500 |
| BfaI | CTAG | 5 cut(s) | 65, 501, 825, 939, 1168 |
| BfmI | CTRYAG | 3 cut(s) | 27, 1086, 1136 |
| BfoI | RGCGCY | 1 cut(s) | 1105 |
| BfuAI | ACCTGC | 3 cut(s) | 602, 1046, 1079 |
| BfuI | GTATCC | 1 cut(s) | 837 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 996 |
| BisI | GCNGC | 7 cut(s) | 84, 954, 963, 1000, 1068, 1100, 1105 |
| BlpI | GCTNAGC | 1 cut(s) | 621 |
| BlsI | GCNGC | 7 cut(s) | 85, 955, 964, 1001, 1069, 1101, 1106 |
| Bme1390I | CCNGG | 3 cut(s) | 283, 737, 1159 |
| Bme18I | GGWCC | 1 cut(s) | 1145 |
| BmgBI | CACGTC | 1 cut(s) | 1114 |
| BmgT120I | GGNCC | 4 cut(s) | 877, 1011, 1145, 1161 |
| BmiI | GGNNCC | 2 cut(s) | 190, 1012 |
| BmrFI | CCNGG | 3 cut(s) | 283, 737, 1159 |
| BmsI | GCATC | 3 cut(s) | 667, 930, 1029 |
| BpmI | CTGGAG | 2 cut(s) | 265, 893 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 621 |
| BpuEI | CTTGAG | 1 cut(s) | 198 |
| BsaJI | CCNNGG | 2 cut(s) | 735, 1157 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1063, 1093 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 70, 93, 175, 596, 840, 886, 1036, 1088, 1158 |
| Bse1I | ACTGG | 1 cut(s) | 75 |
| Bse3DI | GCAATG | 2 cut(s) | 163, 538 |
| BseBI | CCWGG | 3 cut(s) | 283, 737, 1159 |
| BseDI | CCNNGG | 2 cut(s) | 735, 1157 |
| BseGI | GGATG | 5 cut(s) | 566, 585, 682, 1020, 1128 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 70, 93, 175, 596, 840, 886, 1036, 1088, 1158 |
| BseMI | GCAATG | 2 cut(s) | 163, 538 |
| BseMII | CTCAG | 3 cut(s) | 507, 635, 795 |
| BseNI | ACTGG | 1 cut(s) | 75 |
| BseRI | GAGGAG | 1 cut(s) | 419 |
| BseXI | GCAGC | 5 cut(s) | 940, 974, 1079, 1091, 1111 |
| BshFI | GGCC | 7 cut(s) | 86, 479, 866, 878, 990, 1013, 1162 |
| BsiHKAI | GWGCWC | 1 cut(s) | 228 |
| BsiSI | CCGG | 1 cut(s) | 1014 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 70, 93, 175, 596, 840, 886, 1036, 1088, 1158 |
| BsmAI | GTCTC | 1 cut(s) | 719 |
| BsnI | GGCC | 7 cut(s) | 86, 479, 866, 878, 990, 1013, 1162 |
| Bsp1286I | GDGCHC | 2 cut(s) | 228, 622 |
| Bsp143I | GATC | 2 cut(s) | 1044, 1140 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 621 |
| BspACI | CCGC | 3 cut(s) | 83, 451, 999 |
| BspANI | GGCC | 7 cut(s) | 86, 479, 866, 878, 990, 1013, 1162 |
| BspCNI | CTCAG | 3 cut(s) | 508, 634, 794 |
| BspLI | GGNNCC | 2 cut(s) | 190, 1012 |
| BspMAI | CTGCAG | 2 cut(s) | 1090, 1140 |
| BspMI | ACCTGC | 3 cut(s) | 602, 1046, 1079 |
| BsrDI | GCAATG | 2 cut(s) | 163, 538 |
| BsrI | ACTGG | 1 cut(s) | 75 |
| BssECI | CCNNGG | 2 cut(s) | 735, 1157 |
| BssMI | GATC | 2 cut(s) | 1044, 1140 |
| Bst2UI | CCWGG | 3 cut(s) | 283, 737, 1159 |
| Bst4CI | ACNGT | 2 cut(s) | 261, 352 |
| Bst6I | CTCTTC | 1 cut(s) | 1037 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 896 |
| BstC8I | GCNNGC | 4 cut(s) | 477, 888, 915, 919 |
| BstDEI | CTNAG | 4 cut(s) | 516, 593, 621, 781 |
| BstF5I | GGATG | 5 cut(s) | 566, 585, 682, 1020, 1128 |
| BstH2I | RGCGCY | 1 cut(s) | 1105 |
| BstHHI | GCGC | 2 cut(s) | 1004, 1104 |
| BstKTI | GATC | 2 cut(s) | 1047, 1143 |
| BstMAI | GTCTC | 1 cut(s) | 719 |
| BstMBI | GATC | 2 cut(s) | 1044, 1140 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 270, 617, 896, 959, 962, 996, 1010 |
| BstNI | CCWGG | 3 cut(s) | 283, 737, 1159 |
| BstNSI | RCATGY | 1 cut(s) | 290 |
| BstSCI | CCNGG | 3 cut(s) | 281, 735, 1157 |
| BstSFI | CTRYAG | 3 cut(s) | 27, 1086, 1136 |
| BstV1I | GCAGC | 5 cut(s) | 940, 974, 1079, 1091, 1111 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 874 |
| BsuI | GTATCC | 1 cut(s) | 837 |
| BsuRI | GGCC | 7 cut(s) | 86, 479, 866, 878, 990, 1013, 1162 |
| BtrI | CACGTC | 1 cut(s) | 1114 |
| BtsCI | GGATG | 5 cut(s) | 566, 585, 682, 1020, 1128 |
| BtsIMutI | CAGTG | 2 cut(s) | 68, 357 |
| BveI | ACCTGC | 3 cut(s) | 602, 1046, 1079 |
| Cac8I | GCNNGC | 4 cut(s) | 477, 888, 915, 919 |
| CfoI | GCGC | 2 cut(s) | 1004, 1104 |
| Cfr13I | GGNCC | 4 cut(s) | 877, 1011, 1145, 1161 |
| CpoI | CGGWCCG | 1 cut(s) | 1145 |
| CseI | GACGC | 1 cut(s) | 302 |
| Csp6I | GTAC | 2 cut(s) | 504, 799 |
| CspI | CGGWCCG | 1 cut(s) | 1145 |
| CviAII | CATG | 3 cut(s) | 287, 557, 653 |
| CviQI | GTAC | 2 cut(s) | 504, 799 |
| DdeI | CTNAG | 4 cut(s) | 516, 593, 621, 781 |
| DpnI | GATC | 2 cut(s) | 1046, 1142 |
| DpnII | GATC | 2 cut(s) | 1044, 1140 |
| EaeI | YGGCCR | 1 cut(s) | 84 |
| Eam1104I | CTCTTC | 1 cut(s) | 1037 |
| EarI | CTCTTC | 1 cut(s) | 1037 |
| Eco24I | GRGCYC | 1 cut(s) | 622 |
| Eco47I | GGWCC | 1 cut(s) | 1145 |
| Eco47III | AGCGCT | 1 cut(s) | 1103 |
| EcoRII | CCWGG | 3 cut(s) | 281, 735, 1157 |
| EcoT22I | ATGCAT | 1 cut(s) | 141 |
| EcoT38I | GRGCYC | 1 cut(s) | 622 |
| FaeI | CATG | 3 cut(s) | 290, 560, 656 |
| FatI | CATG | 3 cut(s) | 286, 556, 652 |
| FauI | CCCGC | 1 cut(s) | 444 |
| FbaI | TGATCA | 1 cut(s) | 1044 |
| FblI | GTMKAC | 1 cut(s) | 1119 |
| Fnu4HI | GCNGC | 7 cut(s) | 84, 954, 963, 1000, 1068, 1100, 1105 |
| FokI | GGATG | 5 cut(s) | 573, 592, 689, 1007, 1115 |
| FriOI | GRGCYC | 1 cut(s) | 622 |
| Fsp4HI | GCNGC | 7 cut(s) | 84, 954, 963, 1000, 1068, 1100, 1105 |
| FspBI | CTAG | 5 cut(s) | 65, 501, 825, 939, 1168 |
| GlaI | GCGC | 2 cut(s) | 1003, 1103 |
| GluI | GCNGC | 7 cut(s) | 84, 954, 963, 1000, 1068, 1100, 1105 |
| GsuI | CTGGAG | 2 cut(s) | 265, 893 |
| HaeII | RGCGCY | 1 cut(s) | 1105 |
| HaeIII | GGCC | 7 cut(s) | 86, 479, 866, 878, 990, 1013, 1162 |
| HapII | CCGG | 1 cut(s) | 1014 |
| HgaI | GACGC | 1 cut(s) | 302 |
| HhaI | GCGC | 2 cut(s) | 1004, 1104 |
| Hin1II | CATG | 3 cut(s) | 290, 560, 656 |
| Hin6I | GCGC | 2 cut(s) | 1002, 1102 |
| HinP1I | GCGC | 2 cut(s) | 1002, 1102 |
| HincII | GTYRAC | 2 cut(s) | 295, 1120 |
| HindII | GTYRAC | 2 cut(s) | 295, 1120 |
| HindIII | AAGCTT | 1 cut(s) | 383 |
| HinfI | GANTC | 4 cut(s) | 209, 547, 731, 1124 |
| HpaII | CCGG | 1 cut(s) | 1014 |
| HphI | GGTGA | 3 cut(s) | 248, 616, 1068 |
| Hpy166II | GTNNAC | 3 cut(s) | 295, 587, 1120 |
| Hpy188I | TCNGA | 4 cut(s) | 340, 498, 649, 1133 |
| Hpy188III | TCNNGA | 1 cut(s) | 424 |
| Hpy8I | GTNNAC | 3 cut(s) | 295, 587, 1120 |
| Hpy99I | CGWCG | 4 cut(s) | 998, 1118, 1121, 1124 |
| HpyAV | CCTTC | 1 cut(s) | 430 |
| HpyCH4III | ACNGT | 2 cut(s) | 261, 352 |
| HpyCH4IV | ACGT | 1 cut(s) | 1113 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 270, 617, 896, 959, 962, 996, 1010 |
| HpyF3I | CTNAG | 4 cut(s) | 516, 593, 621, 781 |
| HpySE526I | ACGT | 1 cut(s) | 1113 |
| Hsp92II | CATG | 3 cut(s) | 290, 560, 656 |
| HspAI | GCGC | 2 cut(s) | 1002, 1102 |
| Ksp22I | TGATCA | 1 cut(s) | 1044 |
| Kzo9I | GATC | 2 cut(s) | 1044, 1140 |
| LmnI | GCTCC | 3 cut(s) | 406, 460, 697 |
| Lsp1109I | GCAGC | 5 cut(s) | 940, 974, 1079, 1091, 1111 |
| LweI | GCATC | 3 cut(s) | 667, 930, 1029 |
| MaeI | CTAG | 5 cut(s) | 65, 501, 825, 939, 1168 |
| MaeII | ACGT | 1 cut(s) | 1113 |
| MaeIII | GTNAC | 2 cut(s) | 346, 632 |
| MalI | GATC | 2 cut(s) | 1046, 1142 |
| MboI | GATC | 2 cut(s) | 1044, 1140 |
| MboII | GAAGA | 2 cut(s) | 921, 1024 |
| MhlI | GDGCHC | 2 cut(s) | 228, 622 |
| MluCI | AATT | 1 cut(s) | 268 |
| MlyI | GAGTC | 1 cut(s) | 1118 |
| MmeI | TCCRAC | 2 cut(s) | 1106, 1156 |
| Mph1103I | ATGCAT | 1 cut(s) | 141 |
| MroXI | GAANNNNTTC | 1 cut(s) | 9 |
| MseI | TTAA | 1 cut(s) | 366 |
| MslI | CAYNNNNRTG | 1 cut(s) | 667 |
| MspA1I | CMGCKG | 1 cut(s) | 965 |
| MspI | CCGG | 1 cut(s) | 1014 |
| MspR9I | CCNGG | 3 cut(s) | 283, 737, 1159 |
| MvaI | CCWGG | 3 cut(s) | 283, 737, 1159 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 270, 617, 896, 959, 962, 996, 1010 |
| NdeII | GATC | 2 cut(s) | 1044, 1140 |
| NlaIII | CATG | 3 cut(s) | 290, 560, 656 |
| NlaIV | GGNNCC | 2 cut(s) | 190, 1012 |
| NsiI | ATGCAT | 1 cut(s) | 141 |
| NspI | RCATGY | 1 cut(s) | 290 |
| PaqCI | CACCTGC | 1 cut(s) | 602 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 9 |
| PfeI | GAWTC | 3 cut(s) | 209, 547, 731 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 93, 886, 1158 |
| PkrI | GCNGC | 7 cut(s) | 85, 955, 964, 1001, 1069, 1101, 1106 |
| PleI | GAGTC | 1 cut(s) | 1118 |
| PpsI | GAGTC | 1 cut(s) | 1118 |
| Psp6I | CCWGG | 3 cut(s) | 281, 735, 1157 |
| PspGI | CCWGG | 3 cut(s) | 281, 735, 1157 |
| PspN4I | GGNNCC | 2 cut(s) | 190, 1012 |
| PspPI | GGNCC | 4 cut(s) | 877, 1011, 1145, 1161 |
| PstI | CTGCAG | 2 cut(s) | 1090, 1140 |
| PvuII | CAGCTG | 1 cut(s) | 965 |
| RsaI | GTAC | 2 cut(s) | 505, 800 |
| RsaNI | GTAC | 2 cut(s) | 504, 799 |
| RseI | CAYNNNNRTG | 1 cut(s) | 667 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1145 |
| RsrII | CGGWCCG | 1 cut(s) | 1145 |
| SalI | GTCGAC | 1 cut(s) | 1118 |
| SaqAI | TTAA | 1 cut(s) | 366 |
| SatI | GCNGC | 7 cut(s) | 84, 954, 963, 1000, 1068, 1100, 1105 |
| Sau3AI | GATC | 2 cut(s) | 1044, 1140 |
| Sau96I | GGNCC | 4 cut(s) | 877, 1011, 1145, 1161 |
| SchI | GAGTC | 1 cut(s) | 1118 |
| ScrFI | CCNGG | 3 cut(s) | 283, 737, 1159 |
| SduI | GDGCHC | 2 cut(s) | 228, 622 |
| SfaNI | GCATC | 3 cut(s) | 667, 930, 1029 |
| SfcI | CTRYAG | 3 cut(s) | 27, 1086, 1136 |
| SgrDI | CGTCGACG | 1 cut(s) | 1118 |
| SinI | GGWCC | 1 cut(s) | 1145 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 667 |
| SmlI | CTYRAG | 1 cut(s) | 213 |
| SmoI | CTYRAG | 1 cut(s) | 213 |
| SpeI | ACTAGT | 1 cut(s) | 500 |
| Sse9I | AATT | 1 cut(s) | 268 |
| SsiI | CCGC | 3 cut(s) | 83, 451, 999 |
| SspI | AATATT | 1 cut(s) | 430 |
| SspMI | CTAG | 5 cut(s) | 65, 501, 825, 939, 1168 |
| StyD4I | CCNGG | 3 cut(s) | 281, 735, 1157 |
| TaaI | ACNGT | 2 cut(s) | 261, 352 |
| TaiI | ACGT | 1 cut(s) | 1116 |
| TaqI | TCGA | 3 cut(s) | 243, 574, 1119 |
| TaqII | GACCGA | 1 cut(s) | 1133 |
| TasI | AATT | 1 cut(s) | 268 |
| TatI | WGTACW | 1 cut(s) | 503 |
| TauI | GCSGC | 2 cut(s) | 86, 1002 |
| TfiI | GAWTC | 3 cut(s) | 209, 547, 731 |
| Tru1I | TTAA | 1 cut(s) | 366 |
| Tru9I | TTAA | 1 cut(s) | 366 |
| TscAI | CASTG | 2 cut(s) | 75, 357 |
| TseI | GCWGC | 5 cut(s) | 953, 962, 1067, 1099, 1104 |
| TspDTI | ATGAA | 2 cut(s) | 633, 747 |
| TspGWI | ACGGA | 2 cut(s) | 512, 1137 |
| TspRI | CASTG | 2 cut(s) | 75, 357 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 93, 886, 1158 |
| VpaK11BI | GGWCC | 1 cut(s) | 1145 |
| XceI | RCATGY | 1 cut(s) | 290 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1032 |
| XmiI | GTMKAC | 1 cut(s) | 1119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 9 |
| XspI | CTAG | 5 cut(s) | 65, 501, 825, 939, 1168 |
| Zsp2I | ATGCAT | 1 cut(s) | 141 |