Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 783 |
| Acc36I | ACCTGC | 2 cut(s) | 271, 761 |
| AccBSI | CCGCTC | 1 cut(s) | 872 |
| AccII | CGCG | 1 cut(s) | 930 |
| AciI | CCGC | 2 cut(s) | 76, 870 |
| AclWI | GGATC | 1 cut(s) | 152 |
| AcoI | YGGCCR | 1 cut(s) | 495 |
| AcsI | RAATTY | 1 cut(s) | 501 |
| AfaI | GTAC | 4 cut(s) | 17, 276, 493, 887 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 672, 904, 953 |
| AgsI | TTSAA | 4 cut(s) | 203, 244, 523, 620 |
| AjnI | CCWGG | 4 cut(s) | 487, 670, 879, 909 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 641, 673 |
| AluBI | AGCT | 1 cut(s) | 469 |
| AluI | AGCT | 1 cut(s) | 469 |
| Alw26I | GTCTC | 3 cut(s) | 605, 881, 886 |
| AlwI | GGATC | 1 cut(s) | 152 |
| AoxI | GGCC | 4 cut(s) | 495, 581, 663, 907 |
| ApeKI | GCWGC | 1 cut(s) | 176 |
| ApoI | RAATTY | 1 cut(s) | 501 |
| AspLEI | GCGC | 1 cut(s) | 930 |
| AspS9I | GGNCC | 3 cut(s) | 229, 474, 907 |
| AsuHPI | GGTGA | 2 cut(s) | 51, 167 |
| AsuII | TTCGAA | 1 cut(s) | 371 |
| AvaII | GGWCC | 2 cut(s) | 229, 474 |
| BaeGI | GKGCMC | 1 cut(s) | 118 |
| BbsI | GAAGAC | 1 cut(s) | 839 |
| BbvI | GCAGC | 1 cut(s) | 163 |
| BccI | CCATC | 1 cut(s) | 64 |
| BceAI | ACGGC | 3 cut(s) | 268, 510, 650 |
| BciT130I | CCWGG | 4 cut(s) | 489, 672, 881, 911 |
| BcoDI | GTCTC | 3 cut(s) | 605, 881, 886 |
| BfaI | CTAG | 4 cut(s) | 93, 104, 171, 705 |
| BfmI | CTRYAG | 1 cut(s) | 540 |
| BfuAI | ACCTGC | 2 cut(s) | 271, 761 |
| BglII | AGATCT | 1 cut(s) | 454 |
| BisI | GCNGC | 1 cut(s) | 177 |
| BlsI | GCNGC | 1 cut(s) | 178 |
| BmcAI | AGTACT | 1 cut(s) | 17 |
| Bme1390I | CCNGG | 4 cut(s) | 489, 672, 881, 911 |
| Bme18I | GGWCC | 2 cut(s) | 229, 474 |
| BmgT120I | GGNCC | 3 cut(s) | 229, 474, 907 |
| BmiI | GGNNCC | 2 cut(s) | 438, 567 |
| BmrFI | CCNGG | 4 cut(s) | 489, 672, 881, 911 |
| BmsI | GCATC | 1 cut(s) | 205 |
| BpiI | GAAGAC | 1 cut(s) | 839 |
| BpmI | CTGGAG | 1 cut(s) | 863 |
| Bpu14I | TTCGAA | 1 cut(s) | 371 |
| BsaJI | CCNNGG | 5 cut(s) | 671, 837, 898, 910, 938 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 410, 440 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 672, 904, 953 |
| BseBI | CCWGG | 4 cut(s) | 489, 672, 881, 911 |
| BseDI | CCNNGG | 5 cut(s) | 671, 837, 898, 910, 938 |
| BseGI | GGATG | 6 cut(s) | 52, 220, 384, 468, 613, 847 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 672, 904, 953 |
| BseMII | CTCAG | 1 cut(s) | 78 |
| BseRI | GAGGAG | 2 cut(s) | 431, 434 |
| BseSI | GKGCMC | 1 cut(s) | 118 |
| BseXI | GCAGC | 1 cut(s) | 163 |
| Bsh1236I | CGCG | 1 cut(s) | 930 |
| BshFI | GGCC | 4 cut(s) | 497, 583, 665, 909 |
| BslFI | GGGAC | 1 cut(s) | 144 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 672, 904, 953 |
| BsmAI | GTCTC | 3 cut(s) | 605, 881, 886 |
| BsmBI | CGTCTC | 1 cut(s) | 881 |
| BsmFI | GGGAC | 1 cut(s) | 144 |
| BsnI | GGCC | 4 cut(s) | 497, 583, 665, 909 |
| Bsp119I | TTCGAA | 1 cut(s) | 371 |
| Bsp1286I | GDGCHC | 1 cut(s) | 118 |
| Bsp143I | GATC | 2 cut(s) | 157, 454 |
| Bsp19I | CCATGG | 2 cut(s) | 837, 898 |
| BspACI | CCGC | 2 cut(s) | 76, 870 |
| BspANI | GGCC | 4 cut(s) | 497, 583, 665, 909 |
| BspCNI | CTCAG | 1 cut(s) | 79 |
| BspFNI | CGCG | 1 cut(s) | 930 |
| BspLI | GGNNCC | 2 cut(s) | 438, 567 |
| BspMI | ACCTGC | 2 cut(s) | 271, 761 |
| BspPI | GGATC | 1 cut(s) | 152 |
| BspT104I | TTCGAA | 1 cut(s) | 371 |
| BsrBI | CCGCTC | 1 cut(s) | 872 |
| BssECI | CCNNGG | 5 cut(s) | 671, 837, 898, 910, 938 |
| BssMI | GATC | 2 cut(s) | 157, 454 |
| BssT1I | CCWWGG | 3 cut(s) | 837, 898, 938 |
| Bst2UI | CCWGG | 4 cut(s) | 489, 672, 881, 911 |
| BstBI | TTCGAA | 1 cut(s) | 371 |
| BstDEI | CTNAG | 2 cut(s) | 12, 87 |
| BstDSI | CCRYGG | 2 cut(s) | 837, 898 |
| BstF5I | GGATG | 6 cut(s) | 52, 220, 384, 468, 613, 847 |
| BstFNI | CGCG | 1 cut(s) | 930 |
| BstHHI | GCGC | 1 cut(s) | 930 |
| BstKTI | GATC | 2 cut(s) | 160, 457 |
| BstMAI | GTCTC | 3 cut(s) | 605, 881, 886 |
| BstMBI | GATC | 2 cut(s) | 157, 454 |
| BstNI | CCWGG | 4 cut(s) | 489, 672, 881, 911 |
| BstSCI | CCNGG | 4 cut(s) | 487, 670, 879, 909 |
| BstSFI | CTRYAG | 1 cut(s) | 540 |
| BstSLI | GKGCMC | 1 cut(s) | 118 |
| BstUI | CGCG | 1 cut(s) | 930 |
| BstV1I | GCAGC | 1 cut(s) | 163 |
| BstV2I | GAAGAC | 1 cut(s) | 839 |
| BstX2I | RGATCY | 1 cut(s) | 454 |
| BstYI | RGATCY | 1 cut(s) | 454 |
| BsuRI | GGCC | 4 cut(s) | 497, 583, 665, 909 |
| BtgI | CCRYGG | 2 cut(s) | 837, 898 |
| BtsCI | GGATG | 6 cut(s) | 52, 220, 384, 468, 613, 847 |
| BtsI | GCAGTG | 1 cut(s) | 684 |
| BtsIMutI | CAGTG | 1 cut(s) | 684 |
| BveI | ACCTGC | 2 cut(s) | 271, 761 |
| CfoI | GCGC | 1 cut(s) | 930 |
| Cfr13I | GGNCC | 3 cut(s) | 229, 474, 907 |
| CseI | GACGC | 1 cut(s) | 732 |
| Csp6I | GTAC | 4 cut(s) | 16, 275, 492, 886 |
| CviAII | CATG | 4 cut(s) | 134, 290, 838, 899 |
| CviJI | RGCY | 8 cut(s) | 11, 92, 469, 497, 583, 634, 665, 909 |
| CviKI_1 | RGCY | 8 cut(s) | 11, 92, 469, 497, 583, 634, 665, 909 |
| CviQI | GTAC | 4 cut(s) | 16, 275, 492, 886 |
| DdeI | CTNAG | 2 cut(s) | 12, 87 |
| DpnI | GATC | 2 cut(s) | 159, 456 |
| DpnII | GATC | 2 cut(s) | 157, 454 |
| EaeI | YGGCCR | 1 cut(s) | 495 |
| EciI | GGCGGA | 1 cut(s) | 91 |
| Eco130I | CCWWGG | 3 cut(s) | 837, 898, 938 |
| Eco32I | GATATC | 1 cut(s) | 301 |
| Eco47I | GGWCC | 2 cut(s) | 229, 474 |
| EcoRII | CCWGG | 4 cut(s) | 487, 670, 879, 909 |
| EcoRV | GATATC | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 3 cut(s) | 837, 898, 938 |
| ErhI | CCWWGG | 3 cut(s) | 837, 898, 938 |
| Esp3I | CGTCTC | 1 cut(s) | 881 |
| FaeI | CATG | 4 cut(s) | 137, 293, 841, 902 |
| FaqI | GGGAC | 1 cut(s) | 144 |
| FatI | CATG | 4 cut(s) | 133, 289, 837, 898 |
| Fnu4HI | GCNGC | 1 cut(s) | 177 |
| FokI | GGATG | 6 cut(s) | 39, 227, 391, 475, 620, 854 |
| Fsp4HI | GCNGC | 1 cut(s) | 177 |
| FspBI | CTAG | 4 cut(s) | 93, 104, 171, 705 |
| GlaI | GCGC | 1 cut(s) | 929 |
| GluI | GCNGC | 1 cut(s) | 177 |
| GsuI | CTGGAG | 1 cut(s) | 863 |
| HaeIII | GGCC | 4 cut(s) | 497, 583, 665, 909 |
| HgaI | GACGC | 1 cut(s) | 732 |
| HhaI | GCGC | 1 cut(s) | 930 |
| Hin1II | CATG | 4 cut(s) | 137, 293, 841, 902 |
| Hin6I | GCGC | 1 cut(s) | 928 |
| HinP1I | GCGC | 1 cut(s) | 928 |
| HinfI | GANTC | 4 cut(s) | 47, 368, 405, 577 |
| HphI | GGTGA | 2 cut(s) | 51, 167 |
| Hpy166II | GTNNAC | 3 cut(s) | 477, 533, 847 |
| Hpy188I | TCNGA | 1 cut(s) | 88 |
| Hpy188III | TCNNGA | 2 cut(s) | 23, 212 |
| Hpy8I | GTNNAC | 3 cut(s) | 477, 533, 847 |
| HpyAV | CCTTC | 7 cut(s) | 72, 220, 316, 330, 508, 643, 796 |
| HpyCH4IV | ACGT | 1 cut(s) | 118 |
| HpyCH4V | TGCA | 1 cut(s) | 715 |
| HpyF3I | CTNAG | 2 cut(s) | 12, 87 |
| HpySE526I | ACGT | 1 cut(s) | 118 |
| Hsp92II | CATG | 4 cut(s) | 137, 293, 841, 902 |
| HspAI | GCGC | 1 cut(s) | 928 |
| Kzo9I | GATC | 2 cut(s) | 157, 454 |
| LmnI | GCTCC | 1 cut(s) | 184 |
| Lsp1109I | GCAGC | 1 cut(s) | 163 |
| LweI | GCATC | 1 cut(s) | 205 |
| MaeI | CTAG | 4 cut(s) | 93, 104, 171, 705 |
| MaeII | ACGT | 1 cut(s) | 118 |
| MaeIII | GTNAC | 2 cut(s) | 233, 426 |
| MalI | GATC | 2 cut(s) | 159, 456 |
| MbiI | CCGCTC | 1 cut(s) | 872 |
| MboI | GATC | 2 cut(s) | 157, 454 |
| MboII | GAAGA | 2 cut(s) | 687, 844 |
| MfeI | CAATTG | 2 cut(s) | 526, 615 |
| MflI | RGATCY | 1 cut(s) | 454 |
| MhlI | GDGCHC | 1 cut(s) | 118 |
| MluCI | AATT | 5 cut(s) | 501, 526, 615, 760, 784 |
| MlyI | GAGTC | 1 cut(s) | 399 |
| MmeI | TCCRAC | 2 cut(s) | 239, 639 |
| MseI | TTAA | 2 cut(s) | 390, 410 |
| MslI | CAYNNNNRTG | 3 cut(s) | 138, 294, 842 |
| MspR9I | CCNGG | 4 cut(s) | 489, 672, 881, 911 |
| MunI | CAATTG | 2 cut(s) | 526, 615 |
| MvaI | CCWGG | 4 cut(s) | 489, 672, 881, 911 |
| MvnI | CGCG | 1 cut(s) | 930 |
| NcoI | CCATGG | 2 cut(s) | 837, 898 |
| NdeII | GATC | 2 cut(s) | 157, 454 |
| NlaIII | CATG | 4 cut(s) | 137, 293, 841, 902 |
| NlaIV | GGNNCC | 2 cut(s) | 438, 567 |
| NspV | TTCGAA | 1 cut(s) | 371 |
| PfeI | GAWTC | 3 cut(s) | 47, 368, 577 |
| PfoI | TCCNGGA | 1 cut(s) | 879 |
| PkrI | GCNGC | 1 cut(s) | 178 |
| PleI | GAGTC | 1 cut(s) | 399 |
| PpsI | GAGTC | 1 cut(s) | 399 |
| PsiI | TTATAA | 1 cut(s) | 783 |
| Psp6I | CCWGG | 4 cut(s) | 487, 670, 879, 909 |
| PspGI | CCWGG | 4 cut(s) | 487, 670, 879, 909 |
| PspN4I | GGNNCC | 2 cut(s) | 438, 567 |
| PspPI | GGNCC | 3 cut(s) | 229, 474, 907 |
| PsuI | RGATCY | 1 cut(s) | 454 |
| RsaI | GTAC | 4 cut(s) | 17, 276, 493, 887 |
| RsaNI | GTAC | 4 cut(s) | 16, 275, 492, 886 |
| RseI | CAYNNNNRTG | 3 cut(s) | 138, 294, 842 |
| SaqAI | TTAA | 2 cut(s) | 390, 410 |
| SatI | GCNGC | 1 cut(s) | 177 |
| Sau3AI | GATC | 2 cut(s) | 157, 454 |
| Sau96I | GGNCC | 3 cut(s) | 229, 474, 907 |
| ScaI | AGTACT | 1 cut(s) | 17 |
| SchI | GAGTC | 1 cut(s) | 399 |
| ScrFI | CCNGG | 4 cut(s) | 489, 672, 881, 911 |
| SduI | GDGCHC | 1 cut(s) | 118 |
| SfaNI | GCATC | 1 cut(s) | 205 |
| SfcI | CTRYAG | 1 cut(s) | 540 |
| SfuI | TTCGAA | 1 cut(s) | 371 |
| SinI | GGWCC | 2 cut(s) | 229, 474 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 138, 294, 842 |
| Sse9I | AATT | 5 cut(s) | 501, 526, 615, 760, 784 |
| SsiI | CCGC | 2 cut(s) | 76, 870 |
| SspMI | CTAG | 4 cut(s) | 93, 104, 171, 705 |
| StyD4I | CCNGG | 4 cut(s) | 487, 670, 879, 909 |
| StyI | CCWWGG | 3 cut(s) | 837, 898, 938 |
| TaiI | ACGT | 1 cut(s) | 121 |
| TaqI | TCGA | 2 cut(s) | 334, 371 |
| TasI | AATT | 5 cut(s) | 501, 526, 615, 760, 784 |
| TatI | WGTACW | 2 cut(s) | 15, 274 |
| TfiI | GAWTC | 3 cut(s) | 47, 368, 577 |
| Tru1I | TTAA | 2 cut(s) | 390, 410 |
| Tru9I | TTAA | 2 cut(s) | 390, 410 |
| TscAI | CASTG | 1 cut(s) | 691 |
| TseI | GCWGC | 1 cut(s) | 176 |
| TspDTI | ATGAA | 4 cut(s) | 54, 279, 298, 479 |
| TspGWI | ACGGA | 2 cut(s) | 221, 630 |
| TspRI | CASTG | 1 cut(s) | 691 |
| VpaK11BI | GGWCC | 2 cut(s) | 229, 474 |
| XapI | RAATTY | 1 cut(s) | 501 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 896 |
| XspI | CTAG | 4 cut(s) | 93, 104, 171, 705 |
| ZrmI | AGTACT | 1 cut(s) | 17 |