ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 935 |
| Acc16I | TGCGCA | 1 cut(s) | 645 |
| AccBSI | CCGCTC | 1 cut(s) | 657 |
| AccI | GTMKAC | 1 cut(s) | 832 |
| AciI | CCGC | 2 cut(s) | 655, 770 |
| AclWI | GGATC | 3 cut(s) | 551, 1108, 1121 |
| AcsI | RAATTY | 1 cut(s) | 864 |
| AcuI | CTGAAG | 1 cut(s) | 323 |
| AdeI | CACNNNGTG | 1 cut(s) | 171 |
| AfaI | GTAC | 1 cut(s) | 678 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 322, 813, 1012, 1017 |
| AflIII | ACRYGT | 1 cut(s) | 673 |
| AgsI | TTSAA | 3 cut(s) | 220, 872, 1135 |
| AluBI | AGCT | 4 cut(s) | 190, 360, 393, 875 |
| AluI | AGCT | 4 cut(s) | 190, 360, 393, 875 |
| Alw21I | GWGCWC | 1 cut(s) | 176 |
| Alw26I | GTCTC | 2 cut(s) | 257, 904 |
| AlwI | GGATC | 3 cut(s) | 551, 1108, 1121 |
| Ama87I | CYCGRG | 1 cut(s) | 141 |
| ApeKI | GCWGC | 2 cut(s) | 568, 646 |
| ApoI | RAATTY | 1 cut(s) | 864 |
| AseI | ATTAAT | 1 cut(s) | 516 |
| AspLEI | GCGC | 1 cut(s) | 646 |
| AspS9I | GGNCC | 1 cut(s) | 313 |
| AsuC2I | CCSGG | 1 cut(s) | 21 |
| AsuHPI | GGTGA | 2 cut(s) | 139, 607 |
| AsuII | TTCGAA | 1 cut(s) | 245 |
| AvaI | CYCGRG | 1 cut(s) | 141 |
| AvaII | GGWCC | 1 cut(s) | 313 |
| BaeGI | GKGCMC | 1 cut(s) | 77 |
| BamHI | GGATCC | 1 cut(s) | 1113 |
| Bbv12I | GWGCWC | 1 cut(s) | 176 |
| BbvI | GCAGC | 2 cut(s) | 580, 658 |
| BccI | CCATC | 4 cut(s) | 23, 64, 702, 1073 |
| BceAI | ACGGC | 1 cut(s) | 549 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1158, 1192 |
| BcnI | CCSGG | 1 cut(s) | 21 |
| BcoDI | GTCTC | 2 cut(s) | 257, 904 |
| BfaI | CTAG | 1 cut(s) | 191 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 893 |
| BisI | GCNGC | 3 cut(s) | 569, 647, 655 |
| BlsI | GCNGC | 3 cut(s) | 570, 648, 656 |
| Bme1390I | CCNGG | 1 cut(s) | 21 |
| Bme18I | GGWCC | 1 cut(s) | 313 |
| BmeT110I | CYCGRG | 1 cut(s) | 141 |
| BmgT120I | GGNCC | 1 cut(s) | 313 |
| BmiI | GGNNCC | 1 cut(s) | 1115 |
| BmrFI | CCNGG | 1 cut(s) | 21 |
| BmrI | ACTGGG | 1 cut(s) | 1206 |
| BmsI | GCATC | 2 cut(s) | 509, 555 |
| BmuI | ACTGGG | 1 cut(s) | 1206 |
| Bpu14I | TTCGAA | 1 cut(s) | 245 |
| BpuMI | CCSGG | 1 cut(s) | 21 |
| BsaJI | CCNNGG | 2 cut(s) | 888, 1011 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 215, 245, 1060, 1090 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 322, 813, 1012, 1017 |
| Bse1I | ACTGG | 1 cut(s) | 1201 |
| BseDI | CCNNGG | 2 cut(s) | 888, 1011 |
| BseGI | GGATG | 2 cut(s) | 133, 713 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 322, 813, 1012, 1017 |
| BseMII | CTCAG | 1 cut(s) | 674 |
| BseNI | ACTGG | 1 cut(s) | 1201 |
| BseRI | GAGGAG | 1 cut(s) | 1133 |
| BseSI | GKGCMC | 1 cut(s) | 77 |
| BseXI | GCAGC | 2 cut(s) | 580, 658 |
| BseYI | CCCAGC | 2 cut(s) | 971, 1202 |
| BsiHKAI | GWGCWC | 1 cut(s) | 176 |
| BsiHKCI | CYCGRG | 1 cut(s) | 141 |
| BsiSI | CCGG | 1 cut(s) | 21 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 322, 813, 1012, 1017 |
| BsmAI | GTCTC | 2 cut(s) | 257, 904 |
| BsoBI | CYCGRG | 1 cut(s) | 141 |
| Bsp119I | TTCGAA | 1 cut(s) | 245 |
| Bsp1286I | GDGCHC | 2 cut(s) | 77, 176 |
| Bsp1407I | TGTACA | 1 cut(s) | 676 |
| Bsp143I | GATC | 3 cut(s) | 556, 1105, 1113 |
| Bsp19I | CCATGG | 1 cut(s) | 888 |
| BspACI | CCGC | 2 cut(s) | 655, 770 |
| BspCNI | CTCAG | 1 cut(s) | 673 |
| BspHI | TCATGA | 1 cut(s) | 613 |
| BspLI | GGNNCC | 1 cut(s) | 1115 |
| BspPI | GGATC | 3 cut(s) | 551, 1108, 1121 |
| BspT104I | TTCGAA | 1 cut(s) | 245 |
| BsrBI | CCGCTC | 1 cut(s) | 657 |
| BsrGI | TGTACA | 1 cut(s) | 676 |
| BsrI | ACTGG | 1 cut(s) | 1201 |
| BssECI | CCNNGG | 2 cut(s) | 888, 1011 |
| BssMI | GATC | 3 cut(s) | 556, 1105, 1113 |
| BssNAI | GTATAC | 1 cut(s) | 833 |
| BssT1I | CCWWGG | 2 cut(s) | 888, 1011 |
| Bst1107I | GTATAC | 1 cut(s) | 833 |
| Bst4CI | ACNGT | 1 cut(s) | 640 |
| Bst6I | CTCTTC | 1 cut(s) | 280 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 378 |
| BstAUI | TGTACA | 1 cut(s) | 676 |
| BstBI | TTCGAA | 1 cut(s) | 245 |
| BstC8I | GCNNGC | 3 cut(s) | 374, 774, 903 |
| BstDEI | CTNAG | 3 cut(s) | 12, 482, 660 |
| BstDSI | CCRYGG | 1 cut(s) | 888 |
| BstF5I | GGATG | 2 cut(s) | 133, 713 |
| BstHHI | GCGC | 1 cut(s) | 646 |
| BstKTI | GATC | 3 cut(s) | 559, 1108, 1116 |
| BstMAI | GTCTC | 2 cut(s) | 257, 904 |
| BstMBI | GATC | 3 cut(s) | 556, 1105, 1113 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 187, 378, 893, 902 |
| BstNSI | RCATGY | 3 cut(s) | 37, 376, 677 |
| BstSCI | CCNGG | 1 cut(s) | 19 |
| BstSLI | GKGCMC | 1 cut(s) | 77 |
| BstV1I | GCAGC | 2 cut(s) | 580, 658 |
| BstX2I | RGATCY | 1 cut(s) | 1113 |
| BstYI | RGATCY | 1 cut(s) | 1113 |
| BstZ17I | GTATAC | 1 cut(s) | 833 |
| BtgI | CCRYGG | 1 cut(s) | 888 |
| BtsCI | GGATG | 2 cut(s) | 133, 713 |
| BtsIMutI | CAGTG | 2 cut(s) | 75, 552 |
| Cac8I | GCNNGC | 3 cut(s) | 374, 774, 903 |
| CciI | TCATGA | 1 cut(s) | 613 |
| CfoI | GCGC | 1 cut(s) | 646 |
| Cfr13I | GGNCC | 1 cut(s) | 313 |
| Csp6I | GTAC | 1 cut(s) | 677 |
| CviAII | CATG | 9 cut(s) | 34, 272, 373, 614, 674, 680, 704, 889, 906 |
| CviQI | GTAC | 1 cut(s) | 677 |
| DdeI | CTNAG | 3 cut(s) | 12, 482, 660 |
| DpnI | GATC | 3 cut(s) | 558, 1107, 1115 |
| DpnII | GATC | 3 cut(s) | 556, 1105, 1113 |
| DraI | TTTAAA | 1 cut(s) | 670 |
| DraIII | CACNNNGTG | 1 cut(s) | 171 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 935 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 935 |
| Eam1104I | CTCTTC | 1 cut(s) | 280 |
| EarI | CTCTTC | 1 cut(s) | 280 |
| Eco130I | CCWWGG | 2 cut(s) | 888, 1011 |
| Eco47I | GGWCC | 1 cut(s) | 313 |
| Eco57I | CTGAAG | 1 cut(s) | 323 |
| Eco88I | CYCGRG | 1 cut(s) | 141 |
| EcoT14I | CCWWGG | 2 cut(s) | 888, 1011 |
| ErhI | CCWWGG | 2 cut(s) | 888, 1011 |
| FaeI | CATG | 9 cut(s) | 37, 275, 376, 617, 677, 683, 707, 892, 909 |
| FatI | CATG | 9 cut(s) | 33, 271, 372, 613, 673, 679, 703, 888, 905 |
| FauNDI | CATATG | 1 cut(s) | 490 |
| FblI | GTMKAC | 1 cut(s) | 832 |
| Fnu4HI | GCNGC | 3 cut(s) | 569, 647, 655 |
| FokI | GGATG | 2 cut(s) | 120, 720 |
| Fsp4HI | GCNGC | 3 cut(s) | 569, 647, 655 |
| FspBI | CTAG | 1 cut(s) | 191 |
| FspI | TGCGCA | 1 cut(s) | 645 |
| GlaI | GCGC | 1 cut(s) | 645 |
| GluI | GCNGC | 3 cut(s) | 569, 647, 655 |
| GsaI | CCCAGC | 2 cut(s) | 975, 1206 |
| HapII | CCGG | 1 cut(s) | 21 |
| HhaI | GCGC | 1 cut(s) | 646 |
| Hin1II | CATG | 9 cut(s) | 37, 275, 376, 617, 677, 683, 707, 892, 909 |
| Hin6I | GCGC | 1 cut(s) | 644 |
| HinP1I | GCGC | 1 cut(s) | 644 |
| HincII | GTYRAC | 1 cut(s) | 211 |
| HindII | GTYRAC | 1 cut(s) | 211 |
| HindIII | AAGCTT | 1 cut(s) | 873 |
| HinfI | GANTC | 6 cut(s) | 118, 144, 858, 912, 929, 1180 |
| HpaI | GTTAAC | 1 cut(s) | 211 |
| HpaII | CCGG | 1 cut(s) | 21 |
| HphI | GGTGA | 2 cut(s) | 139, 607 |
| Hpy166II | GTNNAC | 3 cut(s) | 211, 632, 833 |
| Hpy188I | TCNGA | 3 cut(s) | 303, 663, 1185 |
| Hpy188III | TCNNGA | 5 cut(s) | 141, 614, 785, 1093, 1177 |
| Hpy8I | GTNNAC | 3 cut(s) | 211, 632, 833 |
| HpyAV | CCTTC | 5 cut(s) | 147, 214, 362, 946, 1017 |
| HpyCH4III | ACNGT | 1 cut(s) | 640 |
| HpyCH4V | TGCA | 4 cut(s) | 275, 381, 568, 989 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 187, 378, 893, 902 |
| HpyF3I | CTNAG | 3 cut(s) | 12, 482, 660 |
| Hsp92II | CATG | 9 cut(s) | 37, 275, 376, 617, 677, 683, 707, 892, 909 |
| HspAI | GCGC | 1 cut(s) | 644 |
| KspAI | GTTAAC | 1 cut(s) | 211 |
| Kzo9I | GATC | 3 cut(s) | 556, 1105, 1113 |
| LmnI | GCTCC | 2 cut(s) | 357, 390 |
| LpnPI | CCDG | 9 cut(s) | 34, 414, 758, 770, 957, 981, 1046, 1182, 1188 |
| Lsp1109I | GCAGC | 2 cut(s) | 580, 658 |
| LweI | GCATC | 2 cut(s) | 509, 555 |
| MaeI | CTAG | 1 cut(s) | 191 |
| MaeIII | GTNAC | 1 cut(s) | 145 |
| MalI | GATC | 3 cut(s) | 558, 1107, 1115 |
| MbiI | CCGCTC | 1 cut(s) | 657 |
| MboI | GATC | 3 cut(s) | 556, 1105, 1113 |
| MboII | GAAGA | 2 cut(s) | 297, 316 |
| MflI | RGATCY | 1 cut(s) | 1113 |
| MhlI | GDGCHC | 2 cut(s) | 77, 176 |
| MlyI | GAGTC | 3 cut(s) | 153, 906, 923 |
| MmeI | TCCRAC | 1 cut(s) | 787 |
| MnlI | CCTC | 7 cut(s) | 217, 281, 489, 1016, 1149, 1154, 1170 |
| MslI | CAYNNNNRTG | 1 cut(s) | 678 |
| MspI | CCGG | 1 cut(s) | 21 |
| MspR9I | CCNGG | 1 cut(s) | 21 |
| MssI | GTTTAAAC | 1 cut(s) | 670 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 187, 378, 893, 902 |
| NciI | CCSGG | 1 cut(s) | 21 |
| NcoI | CCATGG | 1 cut(s) | 888 |
| NdeI | CATATG | 1 cut(s) | 490 |
| NdeII | GATC | 3 cut(s) | 556, 1105, 1113 |
| NlaIII | CATG | 9 cut(s) | 37, 275, 376, 617, 677, 683, 707, 892, 909 |
| NlaIV | GGNNCC | 1 cut(s) | 1115 |
| NmuCI | GTSAC | 1 cut(s) | 145 |
| NsbI | TGCGCA | 1 cut(s) | 645 |
| NspI | RCATGY | 3 cut(s) | 37, 376, 677 |
| NspV | TTCGAA | 1 cut(s) | 245 |
| PaeI | GCATGC | 1 cut(s) | 376 |
| PaeR7I | CTCGAG | 1 cut(s) | 141 |
| PagI | TCATGA | 1 cut(s) | 613 |
| PciI | ACATGT | 1 cut(s) | 673 |
| PfeI | GAWTC | 3 cut(s) | 118, 858, 1180 |
| PkrI | GCNGC | 3 cut(s) | 570, 648, 656 |
| PleI | GAGTC | 3 cut(s) | 152, 906, 923 |
| PmeI | GTTTAAAC | 1 cut(s) | 670 |
| PpsI | GAGTC | 3 cut(s) | 152, 906, 923 |
| PscI | ACATGT | 1 cut(s) | 673 |
| PshBI | ATTAAT | 1 cut(s) | 516 |
| PspFI | CCCAGC | 2 cut(s) | 971, 1202 |
| PspN4I | GGNNCC | 1 cut(s) | 1115 |
| PspPI | GGNCC | 1 cut(s) | 313 |
| PsuI | RGATCY | 1 cut(s) | 1113 |
| RsaI | GTAC | 1 cut(s) | 678 |
| RsaNI | GTAC | 1 cut(s) | 677 |
| RseI | CAYNNNNRTG | 1 cut(s) | 678 |
| SatI | GCNGC | 3 cut(s) | 569, 647, 655 |
| Sau3AI | GATC | 3 cut(s) | 556, 1105, 1113 |
| Sau96I | GGNCC | 1 cut(s) | 313 |
| SchI | GAGTC | 3 cut(s) | 153, 906, 923 |
| ScrFI | CCNGG | 1 cut(s) | 21 |
| SduI | GDGCHC | 2 cut(s) | 77, 176 |
| SetI | ASST | 9 cut(s) | 192, 228, 362, 395, 637, 877, 996, 1027, 1060 |
| SfaNI | GCATC | 2 cut(s) | 509, 555 |
| Sfr274I | CTCGAG | 1 cut(s) | 141 |
| SfuI | TTCGAA | 1 cut(s) | 245 |
| SinI | GGWCC | 1 cut(s) | 313 |
| SlaI | CTCGAG | 1 cut(s) | 141 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 678 |
| SmlI | CTYRAG | 1 cut(s) | 141 |
| SmoI | CTYRAG | 1 cut(s) | 141 |
| SphI | GCATGC | 1 cut(s) | 376 |
| SsiI | CCGC | 2 cut(s) | 655, 770 |
| SspMI | CTAG | 1 cut(s) | 191 |
| StyD4I | CCNGG | 1 cut(s) | 19 |
| StyI | CCWWGG | 2 cut(s) | 888, 1011 |
| TaaI | ACNGT | 1 cut(s) | 640 |
| TaqI | TCGA | 4 cut(s) | 142, 197, 245, 1178 |
| TatI | WGTACW | 1 cut(s) | 676 |
| TauI | GCSGC | 1 cut(s) | 657 |
| TfiI | GAWTC | 3 cut(s) | 118, 858, 1180 |
| TscAI | CASTG | 2 cut(s) | 82, 559 |
| TseFI | GTSAC | 1 cut(s) | 145 |
| TseI | GCWGC | 2 cut(s) | 568, 646 |
| Tsp45I | GTSAC | 1 cut(s) | 145 |
| TspDTI | ATGAA | 2 cut(s) | 260, 965 |
| TspRI | CASTG | 2 cut(s) | 82, 559 |
| VpaK11BI | GGWCC | 1 cut(s) | 313 |
| VspI | ATTAAT | 1 cut(s) | 516 |
| XapI | RAATTY | 1 cut(s) | 864 |
| XceI | RCATGY | 3 cut(s) | 37, 376, 677 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 748 |
| XhoI | CTCGAG | 1 cut(s) | 141 |
| XmiI | GTMKAC | 1 cut(s) | 832 |
| XspI | CTAG | 1 cut(s) | 191 |