ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 106 |
| AfaI | GTAC | 4 cut(s) | 357, 376, 382, 416 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 33, 106, 159 |
| AflIII | ACRYGT | 1 cut(s) | 399 |
| AgsI | TTSAA | 1 cut(s) | 200 |
| AhlI | ACTAGT | 1 cut(s) | 377 |
| AjnI | CCWGG | 1 cut(s) | 32 |
| Alw26I | GTCTC | 2 cut(s) | 307, 326 |
| Ama87I | CYCGRG | 1 cut(s) | 384 |
| AoxI | GGCC | 1 cut(s) | 273 |
| ApeKI | GCWGC | 1 cut(s) | 11 |
| AseI | ATTAAT | 1 cut(s) | 438 |
| AspS9I | GGNCC | 1 cut(s) | 274 |
| AsuHPI | GGTGA | 1 cut(s) | 89 |
| AvaI | CYCGRG | 1 cut(s) | 384 |
| BbvI | GCAGC | 1 cut(s) | 23 |
| BciT130I | CCWGG | 1 cut(s) | 34 |
| BcoDI | GTCTC | 2 cut(s) | 307, 326 |
| BcuI | ACTAGT | 1 cut(s) | 377 |
| BfaI | CTAG | 3 cut(s) | 8, 378, 468 |
| BfmI | CTRYAG | 1 cut(s) | 138 |
| BisI | GCNGC | 1 cut(s) | 12 |
| BlpI | GCTNAGC | 1 cut(s) | 459 |
| BlsI | GCNGC | 1 cut(s) | 13 |
| BmcAI | AGTACT | 1 cut(s) | 382 |
| Bme1390I | CCNGG | 1 cut(s) | 34 |
| BmeT110I | CYCGRG | 1 cut(s) | 384 |
| BmgT120I | GGNCC | 1 cut(s) | 274 |
| BmrFI | CCNGG | 1 cut(s) | 34 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 66, 98, 161, 193 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 2 cut(s) | 33, 100 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 33, 106, 159 |
| BseBI | CCWGG | 1 cut(s) | 34 |
| BseDI | CCNNGG | 2 cut(s) | 33, 100 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 33, 106, 159 |
| BseMII | CTCAG | 2 cut(s) | 171, 450 |
| BseXI | GCAGC | 1 cut(s) | 23 |
| BshFI | GGCC | 1 cut(s) | 275 |
| BsiHKCI | CYCGRG | 1 cut(s) | 384 |
| BslFI | GGGAC | 1 cut(s) | 388 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 33, 106, 159 |
| BsmAI | GTCTC | 2 cut(s) | 307, 326 |
| BsmFI | GGGAC | 1 cut(s) | 388 |
| BsnI | GGCC | 1 cut(s) | 275 |
| BsoBI | CYCGRG | 1 cut(s) | 384 |
| Bsp1407I | TGTACA | 1 cut(s) | 414 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 459 |
| BspANI | GGCC | 1 cut(s) | 275 |
| BspCNI | CTCAG | 2 cut(s) | 172, 451 |
| BsrGI | TGTACA | 1 cut(s) | 414 |
| BssECI | CCNNGG | 2 cut(s) | 33, 100 |
| BssT1I | CCWWGG | 1 cut(s) | 100 |
| Bst2UI | CCWGG | 1 cut(s) | 34 |
| Bst4CI | ACNGT | 1 cut(s) | 142 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 17 |
| BstAUI | TGTACA | 1 cut(s) | 414 |
| BstC8I | GCNNGC | 1 cut(s) | 22 |
| BstDEI | CTNAG | 3 cut(s) | 180, 310, 459 |
| BstMAI | GTCTC | 2 cut(s) | 307, 326 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 17, 74 |
| BstNI | CCWGG | 1 cut(s) | 34 |
| BstNSI | RCATGY | 1 cut(s) | 403 |
| BstSCI | CCNGG | 1 cut(s) | 32 |
| BstSFI | CTRYAG | 1 cut(s) | 138 |
| BstV1I | GCAGC | 1 cut(s) | 23 |
| BsuRI | GGCC | 1 cut(s) | 275 |
| BtsIMutI | CAGTG | 1 cut(s) | 147 |
| Cac8I | GCNNGC | 1 cut(s) | 22 |
| Cfr13I | GGNCC | 1 cut(s) | 274 |
| Csp6I | GTAC | 4 cut(s) | 356, 375, 381, 415 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 252, 287 |
| CviAII | CATG | 2 cut(s) | 166, 400 |
| CviJI | RGCY | 4 cut(s) | 68, 275, 458, 463 |
| CviKI_1 | RGCY | 4 cut(s) | 68, 275, 458, 463 |
| CviQI | GTAC | 4 cut(s) | 356, 375, 381, 415 |
| DdeI | CTNAG | 3 cut(s) | 180, 310, 459 |
| Eco130I | CCWWGG | 1 cut(s) | 100 |
| Eco32I | GATATC | 1 cut(s) | 115 |
| Eco88I | CYCGRG | 1 cut(s) | 384 |
| EcoRII | CCWGG | 1 cut(s) | 32 |
| EcoRV | GATATC | 1 cut(s) | 115 |
| EcoT14I | CCWWGG | 1 cut(s) | 100 |
| ErhI | CCWWGG | 1 cut(s) | 100 |
| FaeI | CATG | 2 cut(s) | 169, 403 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 342, 374 |
| FaqI | GGGAC | 1 cut(s) | 388 |
| FatI | CATG | 2 cut(s) | 165, 399 |
| FauNDI | CATATG | 1 cut(s) | 54 |
| Fnu4HI | GCNGC | 1 cut(s) | 12 |
| Fsp4HI | GCNGC | 1 cut(s) | 12 |
| FspBI | CTAG | 3 cut(s) | 8, 378, 468 |
| GluI | GCNGC | 1 cut(s) | 12 |
| HaeIII | GGCC | 1 cut(s) | 275 |
| Hin1II | CATG | 2 cut(s) | 169, 403 |
| HincII | GTYRAC | 1 cut(s) | 397 |
| HindII | GTYRAC | 1 cut(s) | 397 |
| HinfI | GANTC | 4 cut(s) | 81, 94, 334, 368 |
| HpaI | GTTAAC | 1 cut(s) | 397 |
| HphI | GGTGA | 1 cut(s) | 89 |
| Hpy166II | GTNNAC | 1 cut(s) | 397 |
| Hpy188I | TCNGA | 1 cut(s) | 181 |
| Hpy8I | GTNNAC | 1 cut(s) | 397 |
| HpyCH4III | ACNGT | 1 cut(s) | 142 |
| HpyCH4V | TGCA | 2 cut(s) | 20, 207 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 17, 74 |
| HpyF3I | CTNAG | 3 cut(s) | 180, 310, 459 |
| Hsp92II | CATG | 2 cut(s) | 169, 403 |
| KspAI | GTTAAC | 1 cut(s) | 397 |
| LmnI | GCTCC | 1 cut(s) | 162 |
| LpnPI | CCDG | 4 cut(s) | 19, 46, 63, 351 |
| Lsp1109I | GCAGC | 1 cut(s) | 23 |
| MaeI | CTAG | 3 cut(s) | 8, 378, 468 |
| MboII | GAAGA | 1 cut(s) | 212 |
| MfeI | CAATTG | 1 cut(s) | 15 |
| MluCI | AATT | 2 cut(s) | 15, 316 |
| MlyI | GAGTC | 2 cut(s) | 75, 328 |
| MnlI | CCTC | 8 cut(s) | 58, 163, 175, 358, 380, 418, 448, 474 |
| MseI | TTAA | 5 cut(s) | 39, 218, 396, 438, 472 |
| MspR9I | CCNGG | 1 cut(s) | 34 |
| MunI | CAATTG | 1 cut(s) | 15 |
| MvaI | CCWGG | 1 cut(s) | 34 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 17, 74 |
| NdeI | CATATG | 1 cut(s) | 54 |
| NlaIII | CATG | 2 cut(s) | 169, 403 |
| NspI | RCATGY | 1 cut(s) | 403 |
| PaeR7I | CTCGAG | 1 cut(s) | 384 |
| PciI | ACATGT | 1 cut(s) | 399 |
| PfeI | GAWTC | 2 cut(s) | 94, 368 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 106 |
| PkrI | GCNGC | 1 cut(s) | 13 |
| PleI | GAGTC | 2 cut(s) | 75, 328 |
| PpsI | GAGTC | 2 cut(s) | 75, 328 |
| PscI | ACATGT | 1 cut(s) | 399 |
| PshBI | ATTAAT | 1 cut(s) | 438 |
| Psp6I | CCWGG | 1 cut(s) | 32 |
| PspGI | CCWGG | 1 cut(s) | 32 |
| PspPI | GGNCC | 1 cut(s) | 274 |
| PspXI | VCTCGAGB | 1 cut(s) | 384 |
| RsaI | GTAC | 4 cut(s) | 357, 376, 382, 416 |
| RsaNI | GTAC | 4 cut(s) | 356, 375, 381, 415 |
| SaqAI | TTAA | 5 cut(s) | 39, 218, 396, 438, 472 |
| SatI | GCNGC | 1 cut(s) | 12 |
| Sau96I | GGNCC | 1 cut(s) | 274 |
| ScaI | AGTACT | 1 cut(s) | 382 |
| SchI | GAGTC | 2 cut(s) | 75, 328 |
| ScrFI | CCNGG | 1 cut(s) | 34 |
| SetI | ASST | 4 cut(s) | 106, 186, 250, 391 |
| SfcI | CTRYAG | 1 cut(s) | 138 |
| Sfr274I | CTCGAG | 1 cut(s) | 384 |
| SlaI | CTCGAG | 1 cut(s) | 384 |
| SmlI | CTYRAG | 1 cut(s) | 384 |
| SmoI | CTYRAG | 1 cut(s) | 384 |
| SpeI | ACTAGT | 1 cut(s) | 377 |
| Sse9I | AATT | 2 cut(s) | 15, 316 |
| SspMI | CTAG | 3 cut(s) | 8, 378, 468 |
| StyD4I | CCNGG | 1 cut(s) | 32 |
| StyI | CCWWGG | 1 cut(s) | 100 |
| TaaI | ACNGT | 1 cut(s) | 142 |
| TaqI | TCGA | 1 cut(s) | 385 |
| TasI | AATT | 2 cut(s) | 15, 316 |
| TatI | WGTACW | 4 cut(s) | 355, 374, 380, 414 |
| TfiI | GAWTC | 2 cut(s) | 94, 368 |
| Tru1I | TTAA | 5 cut(s) | 39, 218, 396, 438, 472 |
| Tru9I | TTAA | 5 cut(s) | 39, 218, 396, 438, 472 |
| TscAI | CASTG | 1 cut(s) | 147 |
| TseI | GCWGC | 1 cut(s) | 11 |
| TspRI | CASTG | 1 cut(s) | 147 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 106 |
| VspI | ATTAAT | 1 cut(s) | 438 |
| XceI | RCATGY | 1 cut(s) | 403 |
| XhoI | CTCGAG | 1 cut(s) | 384 |
| XspI | CTAG | 3 cut(s) | 8, 378, 468 |
| ZrmI | AGTACT | 1 cut(s) | 382 |