ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 173 - 291 | 1.5e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 117, 181 |
| AciI | CCGC | 1 cut(s) | 635 |
| AclWI | GGATC | 1 cut(s) | 7 |
| AcsI | RAATTY | 2 cut(s) | 20, 475 |
| AdeI | CACNNNGTG | 1 cut(s) | 733 |
| AfaI | GTAC | 1 cut(s) | 192 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 287, 463, 500 |
| AflII | CTTAAG | 1 cut(s) | 509 |
| AgsI | TTSAA | 3 cut(s) | 443, 543, 647 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 104, 136 |
| AluBI | AGCT | 6 cut(s) | 397, 401, 446, 650, 665, 834 |
| AluI | AGCT | 6 cut(s) | 397, 401, 446, 650, 665, 834 |
| AlwI | GGATC | 1 cut(s) | 7 |
| Ama87I | CYCGRG | 1 cut(s) | 499 |
| AoxI | GGCC | 2 cut(s) | 43, 68 |
| ApeKI | GCWGC | 1 cut(s) | 665 |
| ApoI | RAATTY | 2 cut(s) | 20, 475 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 157, 189 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 475 |
| AspS9I | GGNCC | 1 cut(s) | 68 |
| AsuC2I | CCSGG | 3 cut(s) | 458, 500, 501 |
| AsuHPI | GGTGA | 1 cut(s) | 628 |
| AsuNHI | GCTAGC | 1 cut(s) | 397 |
| AvaI | CYCGRG | 1 cut(s) | 499 |
| BbvI | GCAGC | 1 cut(s) | 652 |
| BccI | CCATC | 3 cut(s) | 518, 615, 749 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 651, 685 |
| BclI | TGATCA | 2 cut(s) | 139, 391 |
| BcnI | CCSGG | 3 cut(s) | 458, 500, 501 |
| BfaI | CTAG | 1 cut(s) | 398 |
| BfrI | CTTAAG | 1 cut(s) | 509 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 819 |
| BisI | GCNGC | 1 cut(s) | 666 |
| BlsI | GCNGC | 1 cut(s) | 667 |
| Bme1390I | CCNGG | 3 cut(s) | 458, 500, 501 |
| BmeT110I | CYCGRG | 1 cut(s) | 499 |
| BmgT120I | GGNCC | 1 cut(s) | 68 |
| BmiI | GGNNCC | 3 cut(s) | 69, 279, 812 |
| BmrFI | CCNGG | 3 cut(s) | 458, 500, 501 |
| BmsI | GCATC | 4 cut(s) | 139, 208, 392, 526 |
| BmtI | GCTAGC | 1 cut(s) | 401 |
| BpmI | CTGGAG | 1 cut(s) | 684 |
| BpuMI | CCSGG | 3 cut(s) | 458, 500, 501 |
| BsaJI | CCNNGG | 1 cut(s) | 499 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 802, 832 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 287, 463, 500 |
| Bse1I | ACTGG | 2 cut(s) | 31, 701 |
| BseDI | CCNNGG | 1 cut(s) | 499 |
| BseGI | GGATG | 1 cut(s) | 15 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 287, 463, 500 |
| BseNI | ACTGG | 2 cut(s) | 31, 701 |
| BseXI | GCAGC | 1 cut(s) | 652 |
| BseYI | CCCAGC | 1 cut(s) | 805 |
| BsgI | GTGCAG | 1 cut(s) | 254 |
| BshFI | GGCC | 2 cut(s) | 45, 70 |
| BsiHKCI | CYCGRG | 1 cut(s) | 499 |
| BsiSI | CCGG | 2 cut(s) | 457, 500 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 287, 463, 500 |
| BsmI | GAATGC | 2 cut(s) | 313, 853 |
| BsnI | GGCC | 2 cut(s) | 45, 70 |
| BsoBI | CYCGRG | 1 cut(s) | 499 |
| Bsp143I | GATC | 4 cut(s) | 12, 139, 159, 391 |
| BspACI | CCGC | 1 cut(s) | 635 |
| BspANI | GGCC | 2 cut(s) | 45, 70 |
| BspLI | GGNNCC | 3 cut(s) | 69, 279, 812 |
| BspOI | GCTAGC | 1 cut(s) | 401 |
| BspPI | GGATC | 1 cut(s) | 7 |
| BspTI | CTTAAG | 1 cut(s) | 509 |
| BsrI | ACTGG | 2 cut(s) | 31, 701 |
| BssECI | CCNNGG | 1 cut(s) | 499 |
| BssMI | GATC | 4 cut(s) | 12, 139, 159, 391 |
| Bst4CI | ACNGT | 2 cut(s) | 190, 483 |
| BstAFI | CTTAAG | 1 cut(s) | 509 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 241 |
| BstC8I | GCNNGC | 3 cut(s) | 399, 670, 729 |
| BstDEI | CTNAG | 1 cut(s) | 612 |
| BstF5I | GGATG | 1 cut(s) | 15 |
| BstKTI | GATC | 4 cut(s) | 15, 142, 162, 394 |
| BstMBI | GATC | 4 cut(s) | 12, 139, 159, 391 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 241, 250, 662, 704, 819, 877 |
| BstNSI | RCATGY | 1 cut(s) | 672 |
| BstSCI | CCNGG | 3 cut(s) | 456, 498, 499 |
| BstV1I | GCAGC | 1 cut(s) | 652 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 554, 871 |
| BsuRI | GGCC | 2 cut(s) | 45, 70 |
| BtsCI | GGATG | 1 cut(s) | 15 |
| BtsIMutI | CAGTG | 1 cut(s) | 488 |
| Cac8I | GCNNGC | 3 cut(s) | 399, 670, 729 |
| Cfr13I | GGNCC | 1 cut(s) | 68 |
| Cfr9I | CCCGGG | 1 cut(s) | 499 |
| Csp6I | GTAC | 1 cut(s) | 191 |
| CviAII | CATG | 2 cut(s) | 254, 669 |
| CviQI | GTAC | 1 cut(s) | 191 |
| DdeI | CTNAG | 1 cut(s) | 612 |
| DpnI | GATC | 4 cut(s) | 14, 141, 161, 393 |
| DpnII | GATC | 4 cut(s) | 12, 139, 159, 391 |
| DraIII | CACNNNGTG | 1 cut(s) | 733 |
| Eco147I | AGGCCT | 1 cut(s) | 45 |
| Eco88I | CYCGRG | 1 cut(s) | 499 |
| EcoO109I | RGGNCCY | 1 cut(s) | 68 |
| EcoRI | GAATTC | 2 cut(s) | 20, 475 |
| FaeI | CATG | 2 cut(s) | 257, 672 |
| FatI | CATG | 2 cut(s) | 253, 668 |
| FauNDI | CATATG | 2 cut(s) | 246, 432 |
| FbaI | TGATCA | 2 cut(s) | 139, 391 |
| FblI | GTMKAC | 2 cut(s) | 117, 181 |
| Fnu4HI | GCNGC | 1 cut(s) | 666 |
| FokI | GGATG | 1 cut(s) | 22 |
| Fsp4HI | GCNGC | 1 cut(s) | 666 |
| FspBI | CTAG | 1 cut(s) | 398 |
| GluI | GCNGC | 1 cut(s) | 666 |
| GsaI | CCCAGC | 1 cut(s) | 809 |
| GsuI | CTGGAG | 1 cut(s) | 684 |
| HaeIII | GGCC | 2 cut(s) | 45, 70 |
| HapII | CCGG | 2 cut(s) | 457, 500 |
| Hin1II | CATG | 2 cut(s) | 257, 672 |
| HincII | GTYRAC | 1 cut(s) | 182 |
| HindII | GTYRAC | 1 cut(s) | 182 |
| HindIII | AAGCTT | 1 cut(s) | 648 |
| HinfI | GANTC | 4 cut(s) | 178, 292, 487, 713 |
| HpaII | CCGG | 2 cut(s) | 457, 500 |
| HphI | GGTGA | 1 cut(s) | 628 |
| Hpy166II | GTNNAC | 3 cut(s) | 118, 182, 486 |
| Hpy188I | TCNGA | 3 cut(s) | 100, 297, 718 |
| Hpy188III | TCNNGA | 3 cut(s) | 163, 322, 389 |
| Hpy8I | GTNNAC | 3 cut(s) | 118, 182, 486 |
| HpyAV | CCTTC | 5 cut(s) | 183, 340, 459, 465, 824 |
| HpyCH4III | ACNGT | 2 cut(s) | 190, 483 |
| HpyCH4IV | ACGT | 1 cut(s) | 239 |
| HpyCH4V | TGCA | 8 cut(s) | 152, 235, 244, 383, 668, 672, 851, 880 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 241, 250, 662, 704, 819, 877 |
| HpyF3I | CTNAG | 1 cut(s) | 612 |
| HpySE526I | ACGT | 1 cut(s) | 239 |
| Hsp92II | CATG | 2 cut(s) | 257, 672 |
| Ksp22I | TGATCA | 2 cut(s) | 139, 391 |
| Kzo9I | GATC | 4 cut(s) | 12, 139, 159, 391 |
| LmnI | GCTCC | 5 cut(s) | 250, 283, 451, 703, 810 |
| Lsp1109I | GCAGC | 1 cut(s) | 652 |
| LweI | GCATC | 4 cut(s) | 139, 208, 392, 526 |
| MaeI | CTAG | 1 cut(s) | 398 |
| MaeII | ACGT | 1 cut(s) | 239 |
| MaeIII | GTNAC | 3 cut(s) | 33, 409, 733 |
| MalI | GATC | 4 cut(s) | 14, 141, 161, 393 |
| MboI | GATC | 4 cut(s) | 12, 139, 159, 391 |
| MboII | GAAGA | 2 cut(s) | 419, 800 |
| MluCI | AATT | 4 cut(s) | 20, 475, 517, 865 |
| MlyI | GAGTC | 3 cut(s) | 187, 481, 722 |
| MmeI | TCCRAC | 2 cut(s) | 660, 824 |
| MnlI | CCTC | 2 cut(s) | 81, 354 |
| MroXI | GAANNNNTTC | 1 cut(s) | 475 |
| MseI | TTAA | 2 cut(s) | 510, 830 |
| MslI | CAYNNNNRTG | 1 cut(s) | 216 |
| MspCI | CTTAAG | 1 cut(s) | 509 |
| MspI | CCGG | 2 cut(s) | 457, 500 |
| MspR9I | CCNGG | 3 cut(s) | 458, 500, 501 |
| Mva1269I | GAATGC | 2 cut(s) | 313, 853 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 241, 250, 662, 704, 819, 877 |
| NciI | CCSGG | 3 cut(s) | 458, 500, 501 |
| NdeI | CATATG | 2 cut(s) | 246, 432 |
| NdeII | GATC | 4 cut(s) | 12, 139, 159, 391 |
| NheI | GCTAGC | 1 cut(s) | 397 |
| NlaIII | CATG | 2 cut(s) | 257, 672 |
| NlaIV | GGNNCC | 3 cut(s) | 69, 279, 812 |
| NmuCI | GTSAC | 1 cut(s) | 733 |
| NspI | RCATGY | 1 cut(s) | 672 |
| PaeI | GCATGC | 1 cut(s) | 672 |
| PceI | AGGCCT | 1 cut(s) | 45 |
| PctI | GAATGC | 2 cut(s) | 313, 853 |
| PdmI | GAANNNNTTC | 1 cut(s) | 475 |
| PfeI | GAWTC | 1 cut(s) | 292 |
| PkrI | GCNGC | 1 cut(s) | 667 |
| PleI | GAGTC | 3 cut(s) | 186, 481, 721 |
| PpsI | GAGTC | 3 cut(s) | 186, 481, 721 |
| PspFI | CCCAGC | 1 cut(s) | 805 |
| PspN4I | GGNNCC | 3 cut(s) | 69, 279, 812 |
| PspPI | GGNCC | 1 cut(s) | 68 |
| RsaI | GTAC | 1 cut(s) | 192 |
| RsaNI | GTAC | 1 cut(s) | 191 |
| RseI | CAYNNNNRTG | 1 cut(s) | 216 |
| SalI | GTCGAC | 1 cut(s) | 180 |
| SaqAI | TTAA | 2 cut(s) | 510, 830 |
| SatI | GCNGC | 1 cut(s) | 666 |
| Sau3AI | GATC | 4 cut(s) | 12, 139, 159, 391 |
| Sau96I | GGNCC | 1 cut(s) | 68 |
| SchI | GAGTC | 3 cut(s) | 187, 481, 722 |
| ScrFI | CCNGG | 3 cut(s) | 458, 500, 501 |
| SfaNI | GCATC | 4 cut(s) | 139, 208, 392, 526 |
| SmaI | CCCGGG | 1 cut(s) | 501 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 216 |
| SmlI | CTYRAG | 1 cut(s) | 509 |
| SmoI | CTYRAG | 1 cut(s) | 509 |
| SphI | GCATGC | 1 cut(s) | 672 |
| Sse9I | AATT | 4 cut(s) | 20, 475, 517, 865 |
| SseBI | AGGCCT | 1 cut(s) | 45 |
| SsiI | CCGC | 1 cut(s) | 635 |
| SspMI | CTAG | 1 cut(s) | 398 |
| StuI | AGGCCT | 1 cut(s) | 45 |
| StyD4I | CCNGG | 3 cut(s) | 456, 498, 499 |
| TaaI | ACNGT | 2 cut(s) | 190, 483 |
| TaiI | ACGT | 1 cut(s) | 242 |
| TaqI | TCGA | 2 cut(s) | 176, 181 |
| TasI | AATT | 4 cut(s) | 20, 475, 517, 865 |
| TfiI | GAWTC | 1 cut(s) | 292 |
| Tru1I | TTAA | 2 cut(s) | 510, 830 |
| Tru9I | TTAA | 2 cut(s) | 510, 830 |
| TscAI | CASTG | 1 cut(s) | 488 |
| TseFI | GTSAC | 1 cut(s) | 733 |
| TseI | GCWGC | 1 cut(s) | 665 |
| Tsp45I | GTSAC | 1 cut(s) | 733 |
| TspDTI | ATGAA | 2 cut(s) | 419, 801 |
| TspGWI | ACGGA | 2 cut(s) | 5, 270 |
| TspMI | CCCGGG | 1 cut(s) | 499 |
| TspRI | CASTG | 1 cut(s) | 488 |
| Vha464I | CTTAAG | 1 cut(s) | 509 |
| XapI | RAATTY | 2 cut(s) | 20, 475 |
| XceI | RCATGY | 1 cut(s) | 672 |
| XmaI | CCCGGG | 1 cut(s) | 499 |
| XmiI | GTMKAC | 2 cut(s) | 117, 181 |
| XmnI | GAANNNNTTC | 1 cut(s) | 475 |
| XspI | CTAG | 1 cut(s) | 398 |