Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 643 |
| AciI | CCGC | 4 cut(s) | 79, 692, 774, 785 |
| AcsI | RAATTY | 4 cut(s) | 242, 410, 820, 880 |
| AcyI | GRCGYC | 1 cut(s) | 549 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 640, 1052 |
| AflIII | ACRYGT | 2 cut(s) | 172, 980 |
| AgsI | TTSAA | 6 cut(s) | 154, 247, 262, 700, 750, 885 |
| AluBI | AGCT | 4 cut(s) | 200, 483, 509, 616 |
| AluI | AGCT | 4 cut(s) | 200, 483, 509, 616 |
| Alw26I | GTCTC | 1 cut(s) | 136 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 200 |
| AoxI | GGCC | 1 cut(s) | 163 |
| ApeKI | GCWGC | 1 cut(s) | 649 |
| ApoI | RAATTY | 4 cut(s) | 242, 410, 820, 880 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 284 |
| AspLEI | GCGC | 1 cut(s) | 649 |
| AsuC2I | CCSGG | 1 cut(s) | 635 |
| AsuHPI | GGTGA | 1 cut(s) | 1039 |
| AxyI | CCTNAGG | 1 cut(s) | 934 |
| BbsI | GAAGAC | 1 cut(s) | 529 |
| BbvCI | CCTCAGC | 1 cut(s) | 201 |
| BbvI | GCAGC | 1 cut(s) | 636 |
| BccI | CCATC | 2 cut(s) | 484, 601 |
| BcnI | CCSGG | 1 cut(s) | 635 |
| BcoDI | GTCTC | 1 cut(s) | 136 |
| BfaI | CTAG | 2 cut(s) | 32, 144 |
| BfmI | CTRYAG | 1 cut(s) | 650 |
| BfuAI | ACCTGC | 1 cut(s) | 643 |
| BisI | GCNGC | 3 cut(s) | 650, 693, 786 |
| BlpI | GCTNAGC | 1 cut(s) | 612 |
| BlsI | GCNGC | 3 cut(s) | 651, 694, 787 |
| Bme1390I | CCNGG | 1 cut(s) | 635 |
| BmiI | GGNNCC | 2 cut(s) | 122, 949 |
| BmrFI | CCNGG | 1 cut(s) | 635 |
| BmsI | GCATC | 6 cut(s) | 201, 223, 393, 634, 679, 1000 |
| BpiI | GAAGAC | 1 cut(s) | 529 |
| Bpu10I | CCTNAGC | 1 cut(s) | 201 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 612 |
| BpuEI | CTTGAG | 3 cut(s) | 609, 645, 896 |
| BpuMI | CCSGG | 1 cut(s) | 635 |
| BsaAI | YACGTR | 1 cut(s) | 40 |
| BsaHI | GRCGYC | 1 cut(s) | 549 |
| BsaJI | CCNNGG | 1 cut(s) | 519 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 640, 1052 |
| Bse1I | ACTGG | 1 cut(s) | 552 |
| Bse21I | CCTNAGG | 1 cut(s) | 934 |
| Bse3DI | GCAATG | 1 cut(s) | 492 |
| BseDI | CCNNGG | 1 cut(s) | 519 |
| BseGI | GGATG | 5 cut(s) | 233, 476, 630, 649, 1015 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 640, 1052 |
| BseMI | GCAATG | 1 cut(s) | 492 |
| BseMII | CTCAG | 3 cut(s) | 192, 603, 843 |
| BseNI | ACTGG | 1 cut(s) | 552 |
| BseRI | GAGGAG | 2 cut(s) | 238, 857 |
| BseXI | GCAGC | 1 cut(s) | 636 |
| BshFI | GGCC | 1 cut(s) | 165 |
| BsiSI | CCGG | 1 cut(s) | 635 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 640, 1052 |
| BsmAI | GTCTC | 1 cut(s) | 136 |
| BsmI | GAATGC | 1 cut(s) | 695 |
| BsnI | GGCC | 1 cut(s) | 165 |
| Bsp143I | GATC | 1 cut(s) | 146 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 612 |
| BspACI | CCGC | 4 cut(s) | 79, 692, 774, 785 |
| BspANI | GGCC | 1 cut(s) | 165 |
| BspCNI | CTCAG | 3 cut(s) | 193, 604, 844 |
| BspLI | GGNNCC | 2 cut(s) | 122, 949 |
| BspMAI | CTGCAG | 1 cut(s) | 654 |
| BspMI | ACCTGC | 1 cut(s) | 643 |
| BsrDI | GCAATG | 1 cut(s) | 492 |
| BsrI | ACTGG | 1 cut(s) | 552 |
| BssECI | CCNNGG | 1 cut(s) | 519 |
| BssMI | GATC | 1 cut(s) | 146 |
| BssNI | GRCGYC | 1 cut(s) | 549 |
| Bst6I | CTCTTC | 1 cut(s) | 105 |
| BstACI | GRCGYC | 1 cut(s) | 549 |
| BstBAI | YACGTR | 1 cut(s) | 40 |
| BstC8I | GCNNGC | 2 cut(s) | 119, 185 |
| BstDEI | CTNAG | 5 cut(s) | 201, 612, 852, 934, 970 |
| BstF5I | GGATG | 5 cut(s) | 233, 476, 630, 649, 1015 |
| BstHHI | GCGC | 1 cut(s) | 649 |
| BstKTI | GATC | 1 cut(s) | 149 |
| BstMAI | GTCTC | 1 cut(s) | 136 |
| BstMBI | GATC | 1 cut(s) | 146 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 782 |
| BstNSI | RCATGY | 2 cut(s) | 187, 984 |
| BstSCI | CCNGG | 1 cut(s) | 633 |
| BstSFI | CTRYAG | 1 cut(s) | 650 |
| BstSNI | TACGTA | 1 cut(s) | 40 |
| BstV1I | GCAGC | 1 cut(s) | 636 |
| BstV2I | GAAGAC | 1 cut(s) | 529 |
| Bsu36I | CCTNAGG | 1 cut(s) | 934 |
| BsuRI | GGCC | 1 cut(s) | 165 |
| BtgZI | GCGATG | 1 cut(s) | 370 |
| BtsCI | GGATG | 5 cut(s) | 233, 476, 630, 649, 1015 |
| BveI | ACCTGC | 1 cut(s) | 643 |
| Cac8I | GCNNGC | 2 cut(s) | 119, 185 |
| CaiI | CAGNNNCTG | 1 cut(s) | 200 |
| CfoI | GCGC | 1 cut(s) | 649 |
| CseI | GACGC | 1 cut(s) | 557 |
| CviAII | CATG | 8 cut(s) | 184, 277, 292, 381, 680, 761, 981, 1047 |
| DdeI | CTNAG | 5 cut(s) | 201, 612, 852, 934, 970 |
| DpnI | GATC | 1 cut(s) | 148 |
| DpnII | GATC | 1 cut(s) | 146 |
| DraI | TTTAAA | 1 cut(s) | 826 |
| Eam1104I | CTCTTC | 1 cut(s) | 105 |
| EarI | CTCTTC | 1 cut(s) | 105 |
| EciI | GGCGGA | 1 cut(s) | 763 |
| Eco105I | TACGTA | 1 cut(s) | 40 |
| Eco147I | AGGCCT | 1 cut(s) | 165 |
| Eco81I | CCTNAGG | 1 cut(s) | 934 |
| EcoRI | GAATTC | 1 cut(s) | 880 |
| EcoT22I | ATGCAT | 3 cut(s) | 216, 386, 1052 |
| FaeI | CATG | 8 cut(s) | 187, 280, 295, 384, 683, 764, 984, 1050 |
| FatI | CATG | 8 cut(s) | 183, 276, 291, 380, 679, 760, 980, 1046 |
| Fnu4HI | GCNGC | 3 cut(s) | 650, 693, 786 |
| FokI | GGATG | 5 cut(s) | 220, 463, 617, 656, 1022 |
| Fsp4HI | GCNGC | 3 cut(s) | 650, 693, 786 |
| FspBI | CTAG | 2 cut(s) | 32, 144 |
| GlaI | GCGC | 1 cut(s) | 648 |
| GluI | GCNGC | 3 cut(s) | 650, 693, 786 |
| HaeIII | GGCC | 1 cut(s) | 165 |
| HapII | CCGG | 1 cut(s) | 635 |
| HgaI | GACGC | 1 cut(s) | 557 |
| HhaI | GCGC | 1 cut(s) | 649 |
| Hin1I | GRCGYC | 1 cut(s) | 549 |
| Hin1II | CATG | 8 cut(s) | 187, 280, 295, 384, 683, 764, 984, 1050 |
| Hin6I | GCGC | 1 cut(s) | 647 |
| HinP1I | GCGC | 1 cut(s) | 647 |
| HincII | GTYRAC | 1 cut(s) | 1058 |
| HindII | GTYRAC | 1 cut(s) | 1058 |
| HinfI | GANTC | 1 cut(s) | 418 |
| HpaII | CCGG | 1 cut(s) | 635 |
| HphI | GGTGA | 1 cut(s) | 1039 |
| Hpy166II | GTNNAC | 5 cut(s) | 269, 573, 925, 986, 1058 |
| Hpy188I | TCNGA | 3 cut(s) | 138, 603, 853 |
| Hpy188III | TCNNGA | 1 cut(s) | 259 |
| Hpy8I | GTNNAC | 5 cut(s) | 269, 573, 925, 986, 1058 |
| HpyCH4IV | ACGT | 4 cut(s) | 39, 174, 265, 900 |
| HpyCH4V | TGCA | 4 cut(s) | 214, 384, 652, 1050 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 782 |
| HpyF3I | CTNAG | 5 cut(s) | 201, 612, 852, 934, 970 |
| HpySE526I | ACGT | 4 cut(s) | 39, 174, 265, 900 |
| Hsp92I | GRCGYC | 1 cut(s) | 549 |
| Hsp92II | CATG | 8 cut(s) | 187, 280, 295, 384, 683, 764, 984, 1050 |
| HspAI | GCGC | 1 cut(s) | 647 |
| Kzo9I | GATC | 1 cut(s) | 146 |
| LmnI | GCTCC | 2 cut(s) | 126, 947 |
| LpnPI | CCDG | 6 cut(s) | 103, 207, 493, 565, 638, 648 |
| Lsp1109I | GCAGC | 1 cut(s) | 636 |
| LweI | GCATC | 6 cut(s) | 201, 223, 393, 634, 679, 1000 |
| MaeI | CTAG | 2 cut(s) | 32, 144 |
| MaeII | ACGT | 4 cut(s) | 39, 174, 265, 900 |
| MaeIII | GTNAC | 1 cut(s) | 909 |
| MalI | GATC | 1 cut(s) | 148 |
| MboI | GATC | 1 cut(s) | 146 |
| MboII | GAAGA | 3 cut(s) | 92, 529, 616 |
| MlyI | GAGTC | 1 cut(s) | 427 |
| Mph1103I | ATGCAT | 3 cut(s) | 216, 386, 1052 |
| MroXI | GAANNNNTTC | 1 cut(s) | 284 |
| MseI | TTAA | 8 cut(s) | 44, 87, 395, 720, 744, 812, 825, 1020 |
| MslI | CAYNNNNRTG | 1 cut(s) | 684 |
| MspI | CCGG | 1 cut(s) | 635 |
| MspR9I | CCNGG | 1 cut(s) | 635 |
| Mva1269I | GAATGC | 1 cut(s) | 695 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 782 |
| NciI | CCSGG | 1 cut(s) | 635 |
| NdeII | GATC | 1 cut(s) | 146 |
| NlaIII | CATG | 8 cut(s) | 187, 280, 295, 384, 683, 764, 984, 1050 |
| NlaIV | GGNNCC | 2 cut(s) | 122, 949 |
| NsiI | ATGCAT | 3 cut(s) | 216, 386, 1052 |
| NspI | RCATGY | 2 cut(s) | 187, 984 |
| PaeI | GCATGC | 1 cut(s) | 187 |
| PceI | AGGCCT | 1 cut(s) | 165 |
| PciI | ACATGT | 1 cut(s) | 980 |
| PctI | GAATGC | 1 cut(s) | 695 |
| PdmI | GAANNNNTTC | 1 cut(s) | 284 |
| PfoI | TCCNGGA | 1 cut(s) | 633 |
| PkrI | GCNGC | 3 cut(s) | 651, 694, 787 |
| PleI | GAGTC | 1 cut(s) | 426 |
| PpsI | GAGTC | 1 cut(s) | 426 |
| Ppu21I | YACGTR | 1 cut(s) | 40 |
| PscI | ACATGT | 1 cut(s) | 980 |
| PspN4I | GGNNCC | 2 cut(s) | 122, 949 |
| PstI | CTGCAG | 1 cut(s) | 654 |
| PstNI | CAGNNNCTG | 1 cut(s) | 200 |
| RseI | CAYNNNNRTG | 1 cut(s) | 684 |
| SaqAI | TTAA | 8 cut(s) | 44, 87, 395, 720, 744, 812, 825, 1020 |
| SatI | GCNGC | 3 cut(s) | 650, 693, 786 |
| Sau3AI | GATC | 1 cut(s) | 146 |
| SchI | GAGTC | 1 cut(s) | 427 |
| ScrFI | CCNGG | 1 cut(s) | 635 |
| SfaNI | GCATC | 6 cut(s) | 201, 223, 393, 634, 679, 1000 |
| SfcI | CTRYAG | 1 cut(s) | 650 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 684 |
| SmlI | CTYRAG | 3 cut(s) | 624, 660, 875 |
| SmoI | CTYRAG | 3 cut(s) | 624, 660, 875 |
| SnaBI | TACGTA | 1 cut(s) | 40 |
| SphI | GCATGC | 1 cut(s) | 187 |
| SseBI | AGGCCT | 1 cut(s) | 165 |
| SsiI | CCGC | 4 cut(s) | 79, 692, 774, 785 |
| SspMI | CTAG | 2 cut(s) | 32, 144 |
| StuI | AGGCCT | 1 cut(s) | 165 |
| StyD4I | CCNGG | 1 cut(s) | 633 |
| TaiI | ACGT | 4 cut(s) | 42, 177, 268, 903 |
| TauI | GCSGC | 2 cut(s) | 695, 788 |
| Tru1I | TTAA | 8 cut(s) | 44, 87, 395, 720, 744, 812, 825, 1020 |
| Tru9I | TTAA | 8 cut(s) | 44, 87, 395, 720, 744, 812, 825, 1020 |
| TseI | GCWGC | 1 cut(s) | 649 |
| TspDTI | ATGAA | 5 cut(s) | 10, 293, 315, 369, 475 |
| XapI | RAATTY | 4 cut(s) | 242, 410, 820, 880 |
| XceI | RCATGY | 2 cut(s) | 187, 984 |
| XmnI | GAANNNNTTC | 1 cut(s) | 284 |
| XspI | CTAG | 2 cut(s) | 32, 144 |
| Zsp2I | ATGCAT | 3 cut(s) | 216, 386, 1052 |