Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RINGv | PF12906 | 46 - 91 | 2.6e-14 | RING-variant domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 197, 307 |
| AccI | GTMKAC | 2 cut(s) | 39, 393 |
| AciI | CCGC | 5 cut(s) | 311, 326, 425, 463, 525 |
| AclWI | GGATC | 1 cut(s) | 245 |
| AcsI | RAATTY | 2 cut(s) | 7, 267 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 154, 287 |
| AflIII | ACRYGT | 1 cut(s) | 93 |
| AgeI | ACCGGT | 1 cut(s) | 304 |
| AgsI | TTSAA | 1 cut(s) | 134 |
| AjnI | CCWGG | 3 cut(s) | 147, 341, 354 |
| Alw21I | GWGCWC | 1 cut(s) | 415 |
| Alw26I | GTCTC | 1 cut(s) | 183 |
| AlwI | GGATC | 1 cut(s) | 245 |
| AoxI | GGCC | 1 cut(s) | 351 |
| ApeKI | GCWGC | 3 cut(s) | 44, 334, 522 |
| ApoI | RAATTY | 2 cut(s) | 7, 267 |
| AsiGI | ACCGGT | 1 cut(s) | 304 |
| AspLEI | GCGC | 1 cut(s) | 382 |
| AspS9I | GGNCC | 1 cut(s) | 352 |
| AsuHPI | GGTGA | 1 cut(s) | 206 |
| BanI | GGYRCC | 2 cut(s) | 197, 307 |
| BauI | CACGAG | 1 cut(s) | 124 |
| Bbv12I | GWGCWC | 1 cut(s) | 415 |
| BbvI | GCAGC | 2 cut(s) | 31, 346 |
| BccI | CCATC | 1 cut(s) | 118 |
| BceAI | ACGGC | 3 cut(s) | 211, 265, 347 |
| BciT130I | CCWGG | 3 cut(s) | 149, 343, 356 |
| BciVI | GTATCC | 1 cut(s) | 236 |
| BcoDI | GTCTC | 1 cut(s) | 183 |
| BfaI | CTAG | 1 cut(s) | 372 |
| BfuI | GTATCC | 1 cut(s) | 236 |
| BisI | GCNGC | 6 cut(s) | 45, 311, 335, 426, 463, 523 |
| BlsI | GCNGC | 6 cut(s) | 46, 312, 336, 427, 464, 524 |
| Bme1390I | CCNGG | 3 cut(s) | 149, 343, 356 |
| BmgT120I | GGNCC | 1 cut(s) | 352 |
| BmiI | GGNNCC | 2 cut(s) | 199, 309 |
| BmrFI | CCNGG | 3 cut(s) | 149, 343, 356 |
| BpuEI | CTTGAG | 2 cut(s) | 188, 265 |
| BsaJI | CCNNGG | 2 cut(s) | 329, 354 |
| BsaWI | WCCGGW | 1 cut(s) | 304 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 154, 287 |
| Bse118I | RCCGGY | 2 cut(s) | 186, 304 |
| Bse3DI | GCAATG | 2 cut(s) | 239, 465 |
| BseBI | CCWGG | 3 cut(s) | 149, 343, 356 |
| BseDI | CCNNGG | 2 cut(s) | 329, 354 |
| BseGI | GGATG | 1 cut(s) | 110 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 154, 287 |
| BseMI | GCAATG | 2 cut(s) | 239, 465 |
| BseXI | GCAGC | 2 cut(s) | 31, 346 |
| BseYI | CCCAGC | 1 cut(s) | 316 |
| BshFI | GGCC | 1 cut(s) | 353 |
| BshNI | GGYRCC | 2 cut(s) | 197, 307 |
| BshTI | ACCGGT | 1 cut(s) | 304 |
| BsiHKAI | GWGCWC | 1 cut(s) | 415 |
| BsiSI | CCGG | 3 cut(s) | 139, 187, 305 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 154, 287 |
| BsmAI | GTCTC | 1 cut(s) | 183 |
| BsmI | GAATGC | 1 cut(s) | 140 |
| BsnI | GGCC | 1 cut(s) | 353 |
| Bsp1286I | GDGCHC | 1 cut(s) | 415 |
| Bsp143I | GATC | 1 cut(s) | 237 |
| BspACI | CCGC | 5 cut(s) | 311, 326, 425, 463, 525 |
| BspANI | GGCC | 1 cut(s) | 353 |
| BspLI | GGNNCC | 2 cut(s) | 199, 309 |
| BspPI | GGATC | 1 cut(s) | 245 |
| BspQI | GCTCTTC | 1 cut(s) | 370 |
| BspT107I | GGYRCC | 2 cut(s) | 197, 307 |
| BsrDI | GCAATG | 2 cut(s) | 239, 465 |
| BsrFI | RCCGGY | 2 cut(s) | 186, 304 |
| BssAI | RCCGGY | 2 cut(s) | 186, 304 |
| BssECI | CCNNGG | 2 cut(s) | 329, 354 |
| BssMI | GATC | 1 cut(s) | 237 |
| BssSI | CACGAG | 1 cut(s) | 124 |
| Bst2BI | CACGAG | 1 cut(s) | 124 |
| Bst2UI | CCWGG | 3 cut(s) | 149, 343, 356 |
| Bst6I | CTCTTC | 1 cut(s) | 370 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 135, 434 |
| BstDSI | CCRYGG | 1 cut(s) | 329 |
| BstF5I | GGATG | 1 cut(s) | 110 |
| BstHHI | GCGC | 1 cut(s) | 382 |
| BstKTI | GATC | 1 cut(s) | 240 |
| BstMAI | GTCTC | 1 cut(s) | 183 |
| BstMBI | GATC | 1 cut(s) | 237 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 135, 144, 334, 377, 386, 395, 434 |
| BstNI | CCWGG | 3 cut(s) | 149, 343, 356 |
| BstNSI | RCATGY | 2 cut(s) | 97, 386 |
| BstSCI | CCNGG | 3 cut(s) | 147, 341, 354 |
| BstV1I | GCAGC | 2 cut(s) | 31, 346 |
| BsuI | GTATCC | 1 cut(s) | 236 |
| BsuRI | GGCC | 1 cut(s) | 353 |
| BtgI | CCRYGG | 1 cut(s) | 329 |
| BtsCI | GGATG | 1 cut(s) | 110 |
| BtsIMutI | CAGTG | 1 cut(s) | 15 |
| CfoI | GCGC | 1 cut(s) | 382 |
| Cfr10I | RCCGGY | 2 cut(s) | 186, 304 |
| Cfr13I | GGNCC | 1 cut(s) | 352 |
| CseI | GACGC | 3 cut(s) | 25, 50, 404 |
| CspAI | ACCGGT | 1 cut(s) | 304 |
| CviAII | CATG | 4 cut(s) | 79, 94, 104, 383 |
| CviJI | RGCY | 4 cut(s) | 280, 337, 353, 371 |
| CviKI_1 | RGCY | 4 cut(s) | 280, 337, 353, 371 |
| DpnI | GATC | 1 cut(s) | 239 |
| DpnII | GATC | 1 cut(s) | 237 |
| Eam1104I | CTCTTC | 1 cut(s) | 370 |
| EarI | CTCTTC | 1 cut(s) | 370 |
| EcoO109I | RGGNCCY | 1 cut(s) | 352 |
| EcoRI | GAATTC | 1 cut(s) | 7 |
| EcoRII | CCWGG | 3 cut(s) | 147, 341, 354 |
| FaeI | CATG | 4 cut(s) | 82, 97, 107, 386 |
| FatI | CATG | 4 cut(s) | 78, 93, 103, 382 |
| FauI | CCCGC | 1 cut(s) | 518 |
| FblI | GTMKAC | 2 cut(s) | 39, 393 |
| Fnu4HI | GCNGC | 6 cut(s) | 45, 311, 335, 426, 463, 523 |
| FokI | GGATG | 1 cut(s) | 97 |
| Fsp4HI | GCNGC | 6 cut(s) | 45, 311, 335, 426, 463, 523 |
| FspBI | CTAG | 1 cut(s) | 372 |
| GlaI | GCGC | 1 cut(s) | 381 |
| GluI | GCNGC | 6 cut(s) | 45, 311, 335, 426, 463, 523 |
| GsaI | CCCAGC | 1 cut(s) | 320 |
| HaeIII | GGCC | 1 cut(s) | 353 |
| HapII | CCGG | 3 cut(s) | 139, 187, 305 |
| HgaI | GACGC | 3 cut(s) | 25, 50, 404 |
| HhaI | GCGC | 1 cut(s) | 382 |
| Hin1II | CATG | 4 cut(s) | 82, 97, 107, 386 |
| Hin6I | GCGC | 1 cut(s) | 380 |
| HinP1I | GCGC | 1 cut(s) | 380 |
| HincII | GTYRAC | 1 cut(s) | 40 |
| HindII | GTYRAC | 1 cut(s) | 40 |
| HinfI | GANTC | 3 cut(s) | 56, 158, 176 |
| HpaII | CCGG | 3 cut(s) | 139, 187, 305 |
| HphI | GGTGA | 1 cut(s) | 206 |
| Hpy166II | GTNNAC | 2 cut(s) | 40, 394 |
| Hpy188I | TCNGA | 2 cut(s) | 28, 61 |
| Hpy8I | GTNNAC | 2 cut(s) | 40, 394 |
| Hpy99I | CGWCG | 2 cut(s) | 41, 44 |
| HpyAV | CCTTC | 1 cut(s) | 124 |
| HpyCH4V | TGCA | 2 cut(s) | 129, 192 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 135, 144, 334, 377, 386, 395, 434 |
| Hsp92II | CATG | 4 cut(s) | 82, 97, 107, 386 |
| HspAI | GCGC | 1 cut(s) | 380 |
| Kzo9I | GATC | 1 cut(s) | 237 |
| LguI | GCTCTTC | 1 cut(s) | 370 |
| LmnI | GCTCC | 2 cut(s) | 100, 475 |
| Lsp1109I | GCAGC | 2 cut(s) | 31, 346 |
| MaeI | CTAG | 1 cut(s) | 372 |
| MaeIII | GTNAC | 3 cut(s) | 248, 272, 512 |
| MalI | GATC | 1 cut(s) | 239 |
| MboI | GATC | 1 cut(s) | 237 |
| MboII | GAAGA | 2 cut(s) | 74, 387 |
| MhlI | GDGCHC | 1 cut(s) | 415 |
| MluCI | AATT | 2 cut(s) | 7, 267 |
| MlyI | GAGTC | 2 cut(s) | 152, 185 |
| MmeI | TCCRAC | 2 cut(s) | 78, 144 |
| MnlI | CCTC | 8 cut(s) | 22, 67, 148, 212, 280, 339, 343, 394 |
| MspA1I | CMGCKG | 1 cut(s) | 525 |
| MspI | CCGG | 3 cut(s) | 139, 187, 305 |
| MspR9I | CCNGG | 3 cut(s) | 149, 343, 356 |
| Mva1269I | GAATGC | 1 cut(s) | 140 |
| MvaI | CCWGG | 3 cut(s) | 149, 343, 356 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 135, 144, 334, 377, 386, 395, 434 |
| NdeII | GATC | 1 cut(s) | 237 |
| NlaIII | CATG | 4 cut(s) | 82, 97, 107, 386 |
| NlaIV | GGNNCC | 2 cut(s) | 199, 309 |
| NspI | RCATGY | 2 cut(s) | 97, 386 |
| PciI | ACATGT | 1 cut(s) | 93 |
| PciSI | GCTCTTC | 1 cut(s) | 370 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 45 |
| PctI | GAATGC | 1 cut(s) | 140 |
| PfeI | GAWTC | 1 cut(s) | 56 |
| PinAI | ACCGGT | 1 cut(s) | 304 |
| PkrI | GCNGC | 6 cut(s) | 46, 312, 336, 427, 464, 524 |
| PleI | GAGTC | 2 cut(s) | 152, 184 |
| PpsI | GAGTC | 2 cut(s) | 152, 184 |
| PscI | ACATGT | 1 cut(s) | 93 |
| Psp6I | CCWGG | 3 cut(s) | 147, 341, 354 |
| PspFI | CCCAGC | 1 cut(s) | 316 |
| PspGI | CCWGG | 3 cut(s) | 147, 341, 354 |
| PspN4I | GGNNCC | 2 cut(s) | 199, 309 |
| PspPI | GGNCC | 1 cut(s) | 352 |
| SalI | GTCGAC | 1 cut(s) | 38 |
| SapI | GCTCTTC | 1 cut(s) | 370 |
| SatI | GCNGC | 6 cut(s) | 45, 311, 335, 426, 463, 523 |
| Sau3AI | GATC | 1 cut(s) | 237 |
| Sau96I | GGNCC | 1 cut(s) | 352 |
| SchI | GAGTC | 2 cut(s) | 152, 185 |
| ScrFI | CCNGG | 3 cut(s) | 149, 343, 356 |
| SduI | GDGCHC | 1 cut(s) | 415 |
| SetI | ASST | 4 cut(s) | 33, 153, 405, 448 |
| SgrDI | CGTCGACG | 1 cut(s) | 38 |
| SmlI | CTYRAG | 2 cut(s) | 203, 244 |
| SmoI | CTYRAG | 2 cut(s) | 203, 244 |
| Sse9I | AATT | 2 cut(s) | 7, 267 |
| SsiI | CCGC | 5 cut(s) | 311, 326, 425, 463, 525 |
| SspMI | CTAG | 1 cut(s) | 372 |
| StyD4I | CCNGG | 3 cut(s) | 147, 341, 354 |
| TaqI | TCGA | 4 cut(s) | 39, 153, 415, 448 |
| TasI | AATT | 2 cut(s) | 7, 267 |
| TauI | GCSGC | 3 cut(s) | 313, 428, 465 |
| TfiI | GAWTC | 1 cut(s) | 56 |
| TscAI | CASTG | 1 cut(s) | 22 |
| TseI | GCWGC | 3 cut(s) | 44, 334, 522 |
| TspDTI | ATGAA | 1 cut(s) | 183 |
| TspRI | CASTG | 1 cut(s) | 22 |
| XapI | RAATTY | 2 cut(s) | 7, 267 |
| XceI | RCATGY | 2 cut(s) | 97, 386 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 94, 169 |
| XmiI | GTMKAC | 2 cut(s) | 39, 393 |
| XspI | CTAG | 1 cut(s) | 372 |