Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 85, 315 |
| AccB1I | GGYRCC | 2 cut(s) | 85, 315 |
| AciI | CCGC | 1 cut(s) | 207 |
| AclWI | GGATC | 2 cut(s) | 71, 152 |
| AcsI | RAATTY | 1 cut(s) | 234 |
| AfaI | GTAC | 2 cut(s) | 87, 317 |
| AgsI | TTSAA | 2 cut(s) | 23, 139 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 340, 372 |
| AluBI | AGCT | 1 cut(s) | 473 |
| AluI | AGCT | 1 cut(s) | 473 |
| Alw26I | GTCTC | 1 cut(s) | 244 |
| AlwI | GGATC | 2 cut(s) | 71, 152 |
| AoxI | GGCC | 1 cut(s) | 107 |
| ApoI | RAATTY | 1 cut(s) | 234 |
| Asp718I | GGTACC | 2 cut(s) | 85, 315 |
| AspS9I | GGNCC | 1 cut(s) | 418 |
| AvaII | GGWCC | 1 cut(s) | 418 |
| BanI | GGYRCC | 2 cut(s) | 85, 315 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 299, 331 |
| BccI | CCATC | 1 cut(s) | 327 |
| BciVI | GTATCC | 1 cut(s) | 24 |
| BcoDI | GTCTC | 1 cut(s) | 244 |
| BfaI | CTAG | 1 cut(s) | 168 |
| BfuI | GTATCC | 1 cut(s) | 24 |
| BglII | AGATCT | 1 cut(s) | 13 |
| Bme18I | GGWCC | 1 cut(s) | 418 |
| BmgT120I | GGNCC | 1 cut(s) | 418 |
| BmiI | GGNNCC | 4 cut(s) | 87, 295, 317, 419 |
| BmsI | GCATC | 1 cut(s) | 471 |
| BpmI | CTGGAG | 1 cut(s) | 212 |
| BsaJI | CCNNGG | 1 cut(s) | 80 |
| BsaWI | WCCGGW | 1 cut(s) | 160 |
| BseDI | CCNNGG | 1 cut(s) | 80 |
| BseGI | GGATG | 2 cut(s) | 183, 462 |
| BseRI | GAGGAG | 1 cut(s) | 227 |
| BseYI | CCCAGC | 1 cut(s) | 413 |
| BshFI | GGCC | 1 cut(s) | 109 |
| BshNI | GGYRCC | 2 cut(s) | 85, 315 |
| BsiSI | CCGG | 1 cut(s) | 161 |
| BsmAI | GTCTC | 1 cut(s) | 244 |
| BsnI | GGCC | 1 cut(s) | 109 |
| Bsp143I | GATC | 3 cut(s) | 13, 76, 157 |
| Bsp19I | CCATGG | 1 cut(s) | 80 |
| BspACI | CCGC | 1 cut(s) | 207 |
| BspANI | GGCC | 1 cut(s) | 109 |
| BspLI | GGNNCC | 4 cut(s) | 87, 295, 317, 419 |
| BspPI | GGATC | 2 cut(s) | 71, 152 |
| BspT107I | GGYRCC | 2 cut(s) | 85, 315 |
| BssECI | CCNNGG | 1 cut(s) | 80 |
| BssMI | GATC | 3 cut(s) | 13, 76, 157 |
| BssT1I | CCWWGG | 1 cut(s) | 80 |
| Bst6I | CTCTTC | 1 cut(s) | 302 |
| BstC8I | GCNNGC | 1 cut(s) | 475 |
| BstDEI | CTNAG | 1 cut(s) | 242 |
| BstDSI | CCRYGG | 1 cut(s) | 80 |
| BstF5I | GGATG | 2 cut(s) | 183, 462 |
| BstKTI | GATC | 3 cut(s) | 16, 79, 160 |
| BstMAI | GTCTC | 1 cut(s) | 244 |
| BstMBI | GATC | 3 cut(s) | 13, 76, 157 |
| BstX2I | RGATCY | 1 cut(s) | 13 |
| BstYI | RGATCY | 1 cut(s) | 13 |
| BsuI | GTATCC | 1 cut(s) | 24 |
| BsuRI | GGCC | 1 cut(s) | 109 |
| BtgI | CCRYGG | 1 cut(s) | 80 |
| BtsCI | GGATG | 2 cut(s) | 183, 462 |
| Cac8I | GCNNGC | 1 cut(s) | 475 |
| Cfr13I | GGNCC | 1 cut(s) | 418 |
| Csp6I | GTAC | 2 cut(s) | 86, 316 |
| CviAII | CATG | 4 cut(s) | 81, 290, 368, 382 |
| CviJI | RGCY | 3 cut(s) | 109, 413, 473 |
| CviKI_1 | RGCY | 3 cut(s) | 109, 413, 473 |
| CviQI | GTAC | 2 cut(s) | 86, 316 |
| DdeI | CTNAG | 1 cut(s) | 242 |
| DpnI | GATC | 3 cut(s) | 15, 78, 159 |
| DpnII | GATC | 3 cut(s) | 13, 76, 157 |
| DraI | TTTAAA | 1 cut(s) | 457 |
| Eam1104I | CTCTTC | 1 cut(s) | 302 |
| EarI | CTCTTC | 1 cut(s) | 302 |
| Eco130I | CCWWGG | 1 cut(s) | 80 |
| Eco147I | AGGCCT | 1 cut(s) | 109 |
| Eco47I | GGWCC | 1 cut(s) | 418 |
| EcoT14I | CCWWGG | 1 cut(s) | 80 |
| ErhI | CCWWGG | 1 cut(s) | 80 |
| FaeI | CATG | 4 cut(s) | 84, 293, 371, 385 |
| FaiI | YATR | 8 cut(s) | 82, 99, 114, 119, 291, 300, 369, 383 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 35 |
| FatI | CATG | 4 cut(s) | 80, 289, 367, 381 |
| FokI | GGATG | 2 cut(s) | 190, 449 |
| FspBI | CTAG | 1 cut(s) | 168 |
| GsaI | CCCAGC | 1 cut(s) | 417 |
| GsuI | CTGGAG | 1 cut(s) | 212 |
| HaeIII | GGCC | 1 cut(s) | 109 |
| HapII | CCGG | 1 cut(s) | 161 |
| Hin1II | CATG | 4 cut(s) | 84, 293, 371, 385 |
| HpaII | CCGG | 1 cut(s) | 161 |
| Hpy188I | TCNGA | 1 cut(s) | 76 |
| Hpy188III | TCNNGA | 3 cut(s) | 20, 191, 433 |
| HpyAV | CCTTC | 2 cut(s) | 133, 403 |
| HpyCH4IV | ACGT | 2 cut(s) | 34, 341 |
| HpyCH4V | TGCA | 2 cut(s) | 326, 477 |
| HpyF3I | CTNAG | 1 cut(s) | 242 |
| HpySE526I | ACGT | 2 cut(s) | 34, 341 |
| Hsp92II | CATG | 4 cut(s) | 84, 293, 371, 385 |
| KpnI | GGTACC | 2 cut(s) | 89, 319 |
| Kzo9I | GATC | 3 cut(s) | 13, 76, 157 |
| LpnPI | CCDG | 8 cut(s) | 26, 55, 91, 104, 174, 176, 399, 418 |
| LweI | GCATC | 1 cut(s) | 471 |
| MaeI | CTAG | 1 cut(s) | 168 |
| MaeII | ACGT | 2 cut(s) | 34, 341 |
| MaeIII | GTNAC | 2 cut(s) | 163, 342 |
| MalI | GATC | 3 cut(s) | 15, 78, 159 |
| MboI | GATC | 3 cut(s) | 13, 76, 157 |
| MboII | GAAGA | 4 cut(s) | 8, 319, 351, 354 |
| MflI | RGATCY | 1 cut(s) | 13 |
| MluCI | AATT | 2 cut(s) | 153, 234 |
| MmeI | TCCRAC | 2 cut(s) | 108, 445 |
| MnlI | CCTC | 7 cut(s) | 105, 115, 187, 205, 208, 249, 441 |
| MseI | TTAA | 3 cut(s) | 152, 282, 456 |
| MslI | CAYNNNNRTG | 1 cut(s) | 372 |
| MspI | CCGG | 1 cut(s) | 161 |
| NcoI | CCATGG | 1 cut(s) | 80 |
| NdeII | GATC | 3 cut(s) | 13, 76, 157 |
| NlaIII | CATG | 4 cut(s) | 84, 293, 371, 385 |
| NlaIV | GGNNCC | 4 cut(s) | 87, 295, 317, 419 |
| PceI | AGGCCT | 1 cut(s) | 109 |
| PspFI | CCCAGC | 1 cut(s) | 413 |
| PspN4I | GGNNCC | 4 cut(s) | 87, 295, 317, 419 |
| PspPI | GGNCC | 1 cut(s) | 418 |
| PsuI | RGATCY | 1 cut(s) | 13 |
| RsaI | GTAC | 2 cut(s) | 87, 317 |
| RsaNI | GTAC | 2 cut(s) | 86, 316 |
| RseI | CAYNNNNRTG | 1 cut(s) | 372 |
| SaqAI | TTAA | 3 cut(s) | 152, 282, 456 |
| Sau3AI | GATC | 3 cut(s) | 13, 76, 157 |
| Sau96I | GGNCC | 1 cut(s) | 418 |
| SfaNI | GCATC | 1 cut(s) | 471 |
| SinI | GGWCC | 1 cut(s) | 418 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 372 |
| Sse9I | AATT | 2 cut(s) | 153, 234 |
| SseBI | AGGCCT | 1 cut(s) | 109 |
| SsiI | CCGC | 1 cut(s) | 207 |
| SspI | AATATT | 1 cut(s) | 134 |
| SspMI | CTAG | 1 cut(s) | 168 |
| StuI | AGGCCT | 1 cut(s) | 109 |
| StyI | CCWWGG | 1 cut(s) | 80 |
| TaiI | ACGT | 2 cut(s) | 37, 344 |
| TaqII | GACCGA | 1 cut(s) | 55 |
| TasI | AATT | 2 cut(s) | 153, 234 |
| Tru1I | TTAA | 3 cut(s) | 152, 282, 456 |
| Tru9I | TTAA | 3 cut(s) | 152, 282, 456 |
| TspDTI | ATGAA | 1 cut(s) | 398 |
| VpaK11BI | GGWCC | 1 cut(s) | 418 |
| XapI | RAATTY | 1 cut(s) | 234 |
| XspI | CTAG | 1 cut(s) | 168 |