Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 26 - 124 | 7.7e-18 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 215 |
| AciI | CCGC | 1 cut(s) | 209 |
| AcoI | YGGCCR | 2 cut(s) | 61, 422 |
| AcuI | CTGAAG | 1 cut(s) | 41 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 59, 306, 307 |
| AflIII | ACRYGT | 1 cut(s) | 396 |
| AgsI | TTSAA | 3 cut(s) | 266, 371, 388 |
| AluBI | AGCT | 1 cut(s) | 167 |
| AluI | AGCT | 1 cut(s) | 167 |
| Ama87I | CYCGRG | 1 cut(s) | 110 |
| AoxI | GGCC | 3 cut(s) | 29, 61, 422 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 375 |
| AsuHPI | GGTGA | 1 cut(s) | 236 |
| AsuNHI | GCTAGC | 1 cut(s) | 163 |
| AvaI | CYCGRG | 1 cut(s) | 110 |
| BalI | TGGCCA | 1 cut(s) | 424 |
| BbsI | GAAGAC | 1 cut(s) | 112 |
| BccI | CCATC | 2 cut(s) | 77, 250 |
| BceAI | ACGGC | 1 cut(s) | 48 |
| BclI | TGATCA | 1 cut(s) | 139 |
| BfaI | CTAG | 2 cut(s) | 164, 433 |
| BfuAI | ACCTGC | 1 cut(s) | 215 |
| BlpI | GCTNAGC | 1 cut(s) | 168 |
| BmeT110I | CYCGRG | 1 cut(s) | 110 |
| BmiI | GGNNCC | 1 cut(s) | 88 |
| BmsI | GCATC | 1 cut(s) | 194 |
| BmtI | GCTAGC | 1 cut(s) | 167 |
| BpiI | GAAGAC | 1 cut(s) | 112 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 1 cut(s) | 247 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 59, 306, 307 |
| Bse1I | ACTGG | 1 cut(s) | 64 |
| Bse3DI | GCAATG | 1 cut(s) | 46 |
| BseDI | CCNNGG | 1 cut(s) | 247 |
| BseGI | GGATG | 1 cut(s) | 261 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 59, 306, 307 |
| BseMI | GCAATG | 1 cut(s) | 46 |
| BseNI | ACTGG | 1 cut(s) | 64 |
| BshFI | GGCC | 3 cut(s) | 31, 63, 424 |
| BsiHKCI | CYCGRG | 1 cut(s) | 110 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 59, 306, 307 |
| BsnI | GGCC | 3 cut(s) | 31, 63, 424 |
| BsoBI | CYCGRG | 1 cut(s) | 110 |
| Bsp143I | GATC | 1 cut(s) | 139 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 168 |
| BspACI | CCGC | 1 cut(s) | 209 |
| BspANI | GGCC | 3 cut(s) | 31, 63, 424 |
| BspLI | GGNNCC | 1 cut(s) | 88 |
| BspMI | ACCTGC | 1 cut(s) | 215 |
| BspOI | GCTAGC | 1 cut(s) | 167 |
| BsrDI | GCAATG | 1 cut(s) | 46 |
| BsrI | ACTGG | 1 cut(s) | 64 |
| BssECI | CCNNGG | 1 cut(s) | 247 |
| BssMI | GATC | 1 cut(s) | 139 |
| BssT1I | CCWWGG | 1 cut(s) | 247 |
| BstC8I | GCNNGC | 2 cut(s) | 165, 237 |
| BstDEI | CTNAG | 1 cut(s) | 168 |
| BstF5I | GGATG | 1 cut(s) | 261 |
| BstKTI | GATC | 1 cut(s) | 142 |
| BstMBI | GATC | 1 cut(s) | 139 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 95, 164, 169, 191, 221 |
| BstNSI | RCATGY | 1 cut(s) | 400 |
| BstV2I | GAAGAC | 1 cut(s) | 112 |
| BsuRI | GGCC | 3 cut(s) | 31, 63, 424 |
| BtsCI | GGATG | 1 cut(s) | 261 |
| BtsIMutI | CAGTG | 3 cut(s) | 17, 57, 273 |
| BveI | ACCTGC | 1 cut(s) | 215 |
| Cac8I | GCNNGC | 2 cut(s) | 165, 237 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 401 |
| CviAII | CATG | 1 cut(s) | 397 |
| DdeI | CTNAG | 1 cut(s) | 168 |
| DpnI | GATC | 1 cut(s) | 141 |
| DpnII | GATC | 1 cut(s) | 139 |
| EaeI | YGGCCR | 2 cut(s) | 61, 422 |
| Eco130I | CCWWGG | 1 cut(s) | 247 |
| Eco147I | AGGCCT | 1 cut(s) | 31 |
| Eco57I | CTGAAG | 1 cut(s) | 41 |
| Eco88I | CYCGRG | 1 cut(s) | 110 |
| EcoT14I | CCWWGG | 1 cut(s) | 247 |
| EcoT22I | ATGCAT | 1 cut(s) | 187 |
| ErhI | CCWWGG | 1 cut(s) | 247 |
| FaeI | CATG | 1 cut(s) | 400 |
| FatI | CATG | 1 cut(s) | 396 |
| FauNDI | CATATG | 1 cut(s) | 201 |
| FbaI | TGATCA | 1 cut(s) | 139 |
| FokI | GGATG | 1 cut(s) | 268 |
| FspBI | CTAG | 2 cut(s) | 164, 433 |
| HaeIII | GGCC | 3 cut(s) | 31, 63, 424 |
| Hin1II | CATG | 1 cut(s) | 400 |
| HinfI | GANTC | 1 cut(s) | 108 |
| HphI | GGTGA | 1 cut(s) | 236 |
| Hpy188I | TCNGA | 5 cut(s) | 69, 331, 342, 394, 407 |
| HpyCH4V | TGCA | 2 cut(s) | 9, 185 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 95, 164, 169, 191, 221 |
| HpyF3I | CTNAG | 1 cut(s) | 168 |
| Hsp92II | CATG | 1 cut(s) | 400 |
| Ksp22I | TGATCA | 1 cut(s) | 139 |
| Kzo9I | GATC | 1 cut(s) | 139 |
| LmnI | GCTCC | 1 cut(s) | 86 |
| LpnPI | CCDG | 6 cut(s) | 45, 45, 210, 221, 238, 275 |
| LweI | GCATC | 1 cut(s) | 194 |
| MaeI | CTAG | 2 cut(s) | 164, 433 |
| MalI | GATC | 1 cut(s) | 141 |
| MboI | GATC | 1 cut(s) | 139 |
| MboII | GAAGA | 3 cut(s) | 117, 180, 371 |
| MlsI | TGGCCA | 1 cut(s) | 424 |
| MluCI | AATT | 1 cut(s) | 311 |
| MluNI | TGGCCA | 1 cut(s) | 424 |
| MlyI | GAGTC | 1 cut(s) | 102 |
| MmeI | TCCRAC | 2 cut(s) | 320, 417 |
| MnlI | CCTC | 4 cut(s) | 63, 205, 311, 343 |
| Mox20I | TGGCCA | 1 cut(s) | 424 |
| Mph1103I | ATGCAT | 1 cut(s) | 187 |
| MroXI | GAANNNNTTC | 1 cut(s) | 375 |
| MscI | TGGCCA | 1 cut(s) | 424 |
| MseI | TTAA | 1 cut(s) | 218 |
| Msp20I | TGGCCA | 1 cut(s) | 424 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 95, 164, 169, 191, 221 |
| NdeI | CATATG | 1 cut(s) | 201 |
| NdeII | GATC | 1 cut(s) | 139 |
| NheI | GCTAGC | 1 cut(s) | 163 |
| NlaIII | CATG | 1 cut(s) | 400 |
| NlaIV | GGNNCC | 1 cut(s) | 88 |
| NmeAIII | GCCGAG | 1 cut(s) | 158 |
| NsiI | ATGCAT | 1 cut(s) | 187 |
| NspI | RCATGY | 1 cut(s) | 400 |
| PceI | AGGCCT | 1 cut(s) | 31 |
| PciI | ACATGT | 1 cut(s) | 396 |
| PdmI | GAANNNNTTC | 1 cut(s) | 375 |
| PleI | GAGTC | 1 cut(s) | 102 |
| PpsI | GAGTC | 1 cut(s) | 102 |
| PscI | ACATGT | 1 cut(s) | 396 |
| PspN4I | GGNNCC | 1 cut(s) | 88 |
| SaqAI | TTAA | 1 cut(s) | 218 |
| Sau3AI | GATC | 1 cut(s) | 139 |
| SchI | GAGTC | 1 cut(s) | 102 |
| SetI | ASST | 3 cut(s) | 169, 229, 340 |
| SfaNI | GCATC | 1 cut(s) | 194 |
| Sse9I | AATT | 1 cut(s) | 311 |
| SseBI | AGGCCT | 1 cut(s) | 31 |
| SsiI | CCGC | 1 cut(s) | 209 |
| SspMI | CTAG | 2 cut(s) | 164, 433 |
| StuI | AGGCCT | 1 cut(s) | 31 |
| StyI | CCWWGG | 1 cut(s) | 247 |
| TasI | AATT | 1 cut(s) | 311 |
| Tru1I | TTAA | 1 cut(s) | 218 |
| Tru9I | TTAA | 1 cut(s) | 218 |
| TscAI | CASTG | 3 cut(s) | 24, 64, 280 |
| TspGWI | ACGGA | 1 cut(s) | 159 |
| TspRI | CASTG | 3 cut(s) | 24, 64, 280 |
| XceI | RCATGY | 1 cut(s) | 400 |
| XmnI | GAANNNNTTC | 1 cut(s) | 375 |
| XspI | CTAG | 2 cut(s) | 164, 433 |
| Zsp2I | ATGCAT | 1 cut(s) | 187 |