Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 13 - 68 | 2.5e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 18 |
| AdeI | CACNNNGTG | 1 cut(s) | 139 |
| AgsI | TTSAA | 1 cut(s) | 98 |
| AjnI | CCWGG | 1 cut(s) | 13 |
| AluBI | AGCT | 1 cut(s) | 88 |
| AluI | AGCT | 1 cut(s) | 88 |
| AoxI | GGCC | 1 cut(s) | 39 |
| ApeKI | GCWGC | 3 cut(s) | 5, 8, 122 |
| AspLEI | GCGC | 1 cut(s) | 110 |
| AsuHPI | GGTGA | 1 cut(s) | 125 |
| BbvI | GCAGC | 1 cut(s) | 109 |
| BccI | CCATC | 1 cut(s) | 72 |
| BceAI | ACGGC | 1 cut(s) | 110 |
| BciT130I | CCWGG | 1 cut(s) | 15 |
| BfaI | CTAG | 3 cut(s) | 26, 62, 170 |
| BisI | GCNGC | 4 cut(s) | 6, 9, 19, 123 |
| BlsI | GCNGC | 4 cut(s) | 7, 10, 20, 124 |
| Bme1390I | CCNGG | 1 cut(s) | 15 |
| BmrFI | CCNGG | 1 cut(s) | 15 |
| BseBI | CCWGG | 1 cut(s) | 15 |
| BseGI | GGATG | 1 cut(s) | 83 |
| BseMII | CTCAG | 1 cut(s) | 48 |
| BseXI | GCAGC | 1 cut(s) | 109 |
| BshFI | GGCC | 1 cut(s) | 41 |
| BsnI | GGCC | 1 cut(s) | 41 |
| BspACI | CCGC | 1 cut(s) | 18 |
| BspANI | GGCC | 1 cut(s) | 41 |
| BspCNI | CTCAG | 1 cut(s) | 47 |
| Bst2UI | CCWGG | 1 cut(s) | 15 |
| BstC8I | GCNNGC | 2 cut(s) | 23, 56 |
| BstDEI | CTNAG | 1 cut(s) | 34 |
| BstF5I | GGATG | 1 cut(s) | 83 |
| BstHHI | GCGC | 1 cut(s) | 110 |
| BstNI | CCWGG | 1 cut(s) | 15 |
| BstSCI | CCNGG | 1 cut(s) | 13 |
| BstV1I | GCAGC | 1 cut(s) | 109 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 118 |
| BsuRI | GGCC | 1 cut(s) | 41 |
| BtsCI | GGATG | 1 cut(s) | 83 |
| Cac8I | GCNNGC | 2 cut(s) | 23, 56 |
| CfoI | GCGC | 1 cut(s) | 110 |
| CviAII | CATG | 1 cut(s) | 137 |
| CviJI | RGCY | 7 cut(s) | 5, 21, 25, 41, 54, 88, 122 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 21, 25, 41, 54, 88, 122 |
| DdeI | CTNAG | 1 cut(s) | 34 |
| DraIII | CACNNNGTG | 1 cut(s) | 139 |
| Eco147I | AGGCCT | 1 cut(s) | 41 |
| EcoRII | CCWGG | 1 cut(s) | 13 |
| FaeI | CATG | 1 cut(s) | 140 |
| FaiI | YATR | 1 cut(s) | 138 |
| FatI | CATG | 1 cut(s) | 136 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 9, 19, 123 |
| FokI | GGATG | 1 cut(s) | 90 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 9, 19, 123 |
| FspBI | CTAG | 3 cut(s) | 26, 62, 170 |
| GlaI | GCGC | 1 cut(s) | 109 |
| GluI | GCNGC | 4 cut(s) | 6, 9, 19, 123 |
| HaeIII | GGCC | 1 cut(s) | 41 |
| HhaI | GCGC | 1 cut(s) | 110 |
| Hin1II | CATG | 1 cut(s) | 140 |
| Hin6I | GCGC | 1 cut(s) | 108 |
| HinP1I | GCGC | 1 cut(s) | 108 |
| HinfI | GANTC | 1 cut(s) | 166 |
| HphI | GGTGA | 1 cut(s) | 125 |
| Hpy188I | TCNGA | 2 cut(s) | 37, 165 |
| Hpy188III | TCNNGA | 1 cut(s) | 170 |
| HpyCH4V | TGCA | 1 cut(s) | 193 |
| HpyF3I | CTNAG | 1 cut(s) | 34 |
| Hsp92II | CATG | 1 cut(s) | 140 |
| HspAI | GCGC | 1 cut(s) | 108 |
| LmnI | GCTCC | 2 cut(s) | 16, 85 |
| LpnPI | CCDG | 6 cut(s) | 7, 27, 35, 55, 74, 138 |
| Lsp1109I | GCAGC | 1 cut(s) | 109 |
| MaeI | CTAG | 3 cut(s) | 26, 62, 170 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MluCI | AATT | 2 cut(s) | 93, 148 |
| MmeI | TCCRAC | 1 cut(s) | 143 |
| MnlI | CCTC | 2 cut(s) | 31, 75 |
| MslI | CAYNNNNRTG | 1 cut(s) | 116 |
| MspR9I | CCNGG | 1 cut(s) | 15 |
| MvaI | CCWGG | 1 cut(s) | 15 |
| NlaIII | CATG | 1 cut(s) | 140 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PceI | AGGCCT | 1 cut(s) | 41 |
| PfeI | GAWTC | 1 cut(s) | 166 |
| PkrI | GCNGC | 4 cut(s) | 7, 10, 20, 124 |
| Psp6I | CCWGG | 1 cut(s) | 13 |
| PspGI | CCWGG | 1 cut(s) | 13 |
| RseI | CAYNNNNRTG | 1 cut(s) | 116 |
| SatI | GCNGC | 4 cut(s) | 6, 9, 19, 123 |
| ScrFI | CCNGG | 1 cut(s) | 15 |
| SetI | ASST | 1 cut(s) | 90 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 116 |
| Sse9I | AATT | 2 cut(s) | 93, 148 |
| SseBI | AGGCCT | 1 cut(s) | 41 |
| SsiI | CCGC | 1 cut(s) | 18 |
| SspMI | CTAG | 3 cut(s) | 26, 62, 170 |
| StuI | AGGCCT | 1 cut(s) | 41 |
| StyD4I | CCNGG | 1 cut(s) | 13 |
| TasI | AATT | 2 cut(s) | 93, 148 |
| TauI | GCSGC | 1 cut(s) | 21 |
| TfiI | GAWTC | 1 cut(s) | 166 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| TseI | GCWGC | 3 cut(s) | 5, 8, 122 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| XbaI | TCTAGA | 1 cut(s) | 169 |
| XspI | CTAG | 3 cut(s) | 26, 62, 170 |