Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 357 |
| AciI | CCGC | 1 cut(s) | 357 |
| AfaI | GTAC | 2 cut(s) | 66, 294 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 167, 492 |
| AgsI | TTSAA | 3 cut(s) | 52, 89, 145 |
| AluBI | AGCT | 2 cut(s) | 299, 431 |
| AluI | AGCT | 2 cut(s) | 299, 431 |
| Alw21I | GWGCWC | 1 cut(s) | 301 |
| Ama87I | CYCGRG | 1 cut(s) | 522 |
| AoxI | GGCC | 3 cut(s) | 76, 169, 399 |
| ApeKI | GCWGC | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 513 |
| AspS9I | GGNCC | 3 cut(s) | 76, 169, 193 |
| AsuC2I | CCSGG | 2 cut(s) | 523, 524 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| AvaI | CYCGRG | 1 cut(s) | 522 |
| AvaII | GGWCC | 1 cut(s) | 193 |
| BanII | GRGCYC | 1 cut(s) | 301 |
| BauI | CACGAG | 1 cut(s) | 462 |
| Bbv12I | GWGCWC | 1 cut(s) | 301 |
| BbvI | GCAGC | 1 cut(s) | 440 |
| BccI | CCATC | 1 cut(s) | 208 |
| BclI | TGATCA | 1 cut(s) | 202 |
| BcnI | CCSGG | 2 cut(s) | 523, 524 |
| BfaI | CTAG | 2 cut(s) | 173, 302 |
| BfmI | CTRYAG | 1 cut(s) | 370 |
| BisI | GCNGC | 2 cut(s) | 358, 429 |
| BlsI | GCNGC | 2 cut(s) | 359, 430 |
| Bme1390I | CCNGG | 2 cut(s) | 523, 524 |
| Bme18I | GGWCC | 1 cut(s) | 193 |
| BmeT110I | CYCGRG | 1 cut(s) | 522 |
| BmgT120I | GGNCC | 3 cut(s) | 76, 169, 193 |
| BmiI | GGNNCC | 1 cut(s) | 77 |
| BmrFI | CCNGG | 2 cut(s) | 523, 524 |
| BmrI | ACTGGG | 1 cut(s) | 334 |
| BmsI | GCATC | 3 cut(s) | 489, 517, 583 |
| BmuI | ACTGGG | 1 cut(s) | 334 |
| BpuEI | CTTGAG | 1 cut(s) | 544 |
| BpuMI | CCSGG | 2 cut(s) | 523, 524 |
| BsaAI | YACGTR | 1 cut(s) | 71 |
| BsaJI | CCNNGG | 2 cut(s) | 119, 522 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 167, 492 |
| Bse1I | ACTGG | 1 cut(s) | 329 |
| BseDI | CCNNGG | 2 cut(s) | 119, 522 |
| BseGI | GGATG | 3 cut(s) | 219, 504, 532 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 167, 492 |
| BseMII | CTCAG | 1 cut(s) | 249 |
| BseNI | ACTGG | 1 cut(s) | 329 |
| BseXI | GCAGC | 1 cut(s) | 440 |
| BshFI | GGCC | 3 cut(s) | 78, 171, 401 |
| BsiHKAI | GWGCWC | 1 cut(s) | 301 |
| BsiHKCI | CYCGRG | 1 cut(s) | 522 |
| BsiSI | CCGG | 1 cut(s) | 523 |
| BslFI | GGGAC | 1 cut(s) | 341 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 167, 492 |
| BsmFI | GGGAC | 1 cut(s) | 341 |
| BsnI | GGCC | 3 cut(s) | 78, 171, 401 |
| BsoBI | CYCGRG | 1 cut(s) | 522 |
| Bsp1286I | GDGCHC | 1 cut(s) | 301 |
| Bsp143I | GATC | 1 cut(s) | 202 |
| BspACI | CCGC | 1 cut(s) | 357 |
| BspANI | GGCC | 3 cut(s) | 78, 171, 401 |
| BspCNI | CTCAG | 1 cut(s) | 250 |
| BspLI | GGNNCC | 1 cut(s) | 77 |
| BsrBI | CCGCTC | 1 cut(s) | 357 |
| BsrI | ACTGG | 1 cut(s) | 329 |
| BssECI | CCNNGG | 2 cut(s) | 119, 522 |
| BssMI | GATC | 1 cut(s) | 202 |
| BssSI | CACGAG | 1 cut(s) | 462 |
| BssT1I | CCWWGG | 1 cut(s) | 119 |
| Bst2BI | CACGAG | 1 cut(s) | 462 |
| Bst4CI | ACNGT | 1 cut(s) | 150 |
| BstBAI | YACGTR | 1 cut(s) | 71 |
| BstDEI | CTNAG | 2 cut(s) | 258, 287 |
| BstF5I | GGATG | 3 cut(s) | 219, 504, 532 |
| BstKTI | GATC | 1 cut(s) | 205 |
| BstMBI | GATC | 1 cut(s) | 202 |
| BstNSI | RCATGY | 1 cut(s) | 605 |
| BstSCI | CCNGG | 2 cut(s) | 521, 522 |
| BstSFI | CTRYAG | 1 cut(s) | 370 |
| BstSNI | TACGTA | 1 cut(s) | 71 |
| BstV1I | GCAGC | 1 cut(s) | 440 |
| BsuRI | GGCC | 3 cut(s) | 78, 171, 401 |
| BtsCI | GGATG | 3 cut(s) | 219, 504, 532 |
| BtsIMutI | CAGTG | 1 cut(s) | 322 |
| Cfr13I | GGNCC | 3 cut(s) | 76, 169, 193 |
| Cfr9I | CCCGGG | 1 cut(s) | 522 |
| Csp6I | GTAC | 2 cut(s) | 65, 293 |
| CviAII | CATG | 4 cut(s) | 36, 239, 365, 602 |
| CviJI | RGCY | 9 cut(s) | 78, 124, 171, 299, 360, 376, 401, 431, 615 |
| CviKI_1 | RGCY | 9 cut(s) | 78, 124, 171, 299, 360, 376, 401, 431, 615 |
| CviQI | GTAC | 2 cut(s) | 65, 293 |
| DdeI | CTNAG | 2 cut(s) | 258, 287 |
| DpnI | GATC | 1 cut(s) | 204 |
| DpnII | GATC | 1 cut(s) | 202 |
| DraI | TTTAAA | 1 cut(s) | 610 |
| Ecl136II | GAGCTC | 1 cut(s) | 299 |
| Eco105I | TACGTA | 1 cut(s) | 71 |
| Eco130I | CCWWGG | 1 cut(s) | 119 |
| Eco24I | GRGCYC | 1 cut(s) | 301 |
| Eco47I | GGWCC | 1 cut(s) | 193 |
| Eco53kI | GAGCTC | 1 cut(s) | 299 |
| Eco88I | CYCGRG | 1 cut(s) | 522 |
| EcoICRI | GAGCTC | 1 cut(s) | 299 |
| EcoO109I | RGGNCCY | 3 cut(s) | 76, 169, 193 |
| EcoT14I | CCWWGG | 1 cut(s) | 119 |
| EcoT22I | ATGCAT | 1 cut(s) | 504 |
| EcoT38I | GRGCYC | 1 cut(s) | 301 |
| ErhI | CCWWGG | 1 cut(s) | 119 |
| FaeI | CATG | 4 cut(s) | 39, 242, 368, 605 |
| FaqI | GGGAC | 1 cut(s) | 341 |
| FatI | CATG | 4 cut(s) | 35, 238, 364, 601 |
| FbaI | TGATCA | 1 cut(s) | 202 |
| Fnu4HI | GCNGC | 2 cut(s) | 358, 429 |
| FokI | GGATG | 3 cut(s) | 226, 511, 539 |
| FriOI | GRGCYC | 1 cut(s) | 301 |
| Fsp4HI | GCNGC | 2 cut(s) | 358, 429 |
| FspBI | CTAG | 2 cut(s) | 173, 302 |
| GluI | GCNGC | 2 cut(s) | 358, 429 |
| HaeIII | GGCC | 3 cut(s) | 78, 171, 401 |
| HapII | CCGG | 1 cut(s) | 523 |
| Hin1II | CATG | 4 cut(s) | 39, 242, 368, 605 |
| HinfI | GANTC | 2 cut(s) | 176, 557 |
| HpaII | CCGG | 1 cut(s) | 523 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy166II | GTNNAC | 2 cut(s) | 153, 293 |
| Hpy188I | TCNGA | 1 cut(s) | 556 |
| Hpy188III | TCNNGA | 4 cut(s) | 206, 302, 352, 411 |
| Hpy8I | GTNNAC | 2 cut(s) | 153, 293 |
| HpyAV | CCTTC | 4 cut(s) | 89, 439, 451, 496 |
| HpyCH4III | ACNGT | 1 cut(s) | 150 |
| HpyCH4IV | ACGT | 1 cut(s) | 70 |
| HpyCH4V | TGCA | 7 cut(s) | 35, 238, 275, 502, 548, 576, 601 |
| HpyF3I | CTNAG | 2 cut(s) | 258, 287 |
| HpySE526I | ACGT | 1 cut(s) | 70 |
| Hsp92II | CATG | 4 cut(s) | 39, 242, 368, 605 |
| Ksp22I | TGATCA | 1 cut(s) | 202 |
| Kzo9I | GATC | 1 cut(s) | 202 |
| LpnPI | CCDG | 4 cut(s) | 310, 358, 409, 536 |
| Lsp1109I | GCAGC | 1 cut(s) | 440 |
| LweI | GCATC | 3 cut(s) | 489, 517, 583 |
| MaeI | CTAG | 2 cut(s) | 173, 302 |
| MaeII | ACGT | 1 cut(s) | 70 |
| MalI | GATC | 1 cut(s) | 204 |
| MbiI | CCGCTC | 1 cut(s) | 357 |
| MboI | GATC | 1 cut(s) | 202 |
| MboII | GAAGA | 5 cut(s) | 125, 238, 399, 550, 602 |
| MhlI | GDGCHC | 1 cut(s) | 301 |
| MluCI | AATT | 5 cut(s) | 198, 394, 510, 549, 580 |
| MlyI | GAGTC | 1 cut(s) | 551 |
| MnlI | CCTC | 6 cut(s) | 55, 160, 253, 329, 412, 480 |
| Mph1103I | ATGCAT | 1 cut(s) | 504 |
| MroXI | GAANNNNTTC | 1 cut(s) | 513 |
| MseI | TTAA | 3 cut(s) | 15, 189, 609 |
| MspA1I | CMGCKG | 1 cut(s) | 431 |
| MspI | CCGG | 1 cut(s) | 523 |
| MspR9I | CCNGG | 2 cut(s) | 523, 524 |
| NciI | CCSGG | 2 cut(s) | 523, 524 |
| NdeII | GATC | 1 cut(s) | 202 |
| NlaIII | CATG | 4 cut(s) | 39, 242, 368, 605 |
| NlaIV | GGNNCC | 1 cut(s) | 77 |
| NsiI | ATGCAT | 1 cut(s) | 504 |
| NspI | RCATGY | 1 cut(s) | 605 |
| PdmI | GAANNNNTTC | 1 cut(s) | 513 |
| PfeI | GAWTC | 1 cut(s) | 176 |
| PkrI | GCNGC | 2 cut(s) | 359, 430 |
| PleI | GAGTC | 1 cut(s) | 551 |
| PpsI | GAGTC | 1 cut(s) | 551 |
| Ppu21I | YACGTR | 1 cut(s) | 71 |
| PpuMI | RGGWCCY | 1 cut(s) | 193 |
| Psp124BI | GAGCTC | 1 cut(s) | 301 |
| Psp5II | RGGWCCY | 1 cut(s) | 193 |
| PspN4I | GGNNCC | 1 cut(s) | 77 |
| PspPI | GGNCC | 3 cut(s) | 76, 169, 193 |
| PspPPI | RGGWCCY | 1 cut(s) | 193 |
| PvuII | CAGCTG | 1 cut(s) | 431 |
| RsaI | GTAC | 2 cut(s) | 66, 294 |
| RsaNI | GTAC | 2 cut(s) | 65, 293 |
| SacI | GAGCTC | 1 cut(s) | 301 |
| SaqAI | TTAA | 3 cut(s) | 15, 189, 609 |
| SatI | GCNGC | 2 cut(s) | 358, 429 |
| Sau3AI | GATC | 1 cut(s) | 202 |
| Sau96I | GGNCC | 3 cut(s) | 76, 169, 193 |
| SchI | GAGTC | 1 cut(s) | 551 |
| ScrFI | CCNGG | 2 cut(s) | 523, 524 |
| SduI | GDGCHC | 1 cut(s) | 301 |
| SfaNI | GCATC | 3 cut(s) | 489, 517, 583 |
| SfcI | CTRYAG | 1 cut(s) | 370 |
| SinI | GGWCC | 1 cut(s) | 193 |
| SmaI | CCCGGG | 1 cut(s) | 524 |
| SmlI | CTYRAG | 1 cut(s) | 559 |
| SmoI | CTYRAG | 1 cut(s) | 559 |
| SnaBI | TACGTA | 1 cut(s) | 71 |
| Sse9I | AATT | 5 cut(s) | 198, 394, 510, 549, 580 |
| SsiI | CCGC | 1 cut(s) | 357 |
| SspMI | CTAG | 2 cut(s) | 173, 302 |
| SstI | GAGCTC | 1 cut(s) | 301 |
| StyD4I | CCNGG | 2 cut(s) | 521, 522 |
| StyI | CCWWGG | 1 cut(s) | 119 |
| TaaI | ACNGT | 1 cut(s) | 150 |
| TaiI | ACGT | 1 cut(s) | 73 |
| TaqI | TCGA | 1 cut(s) | 410 |
| TasI | AATT | 5 cut(s) | 198, 394, 510, 549, 580 |
| TauI | GCSGC | 1 cut(s) | 360 |
| TfiI | GAWTC | 1 cut(s) | 176 |
| Tru1I | TTAA | 3 cut(s) | 15, 189, 609 |
| Tru9I | TTAA | 3 cut(s) | 15, 189, 609 |
| TscAI | CASTG | 1 cut(s) | 329 |
| TseI | GCWGC | 1 cut(s) | 428 |
| TspDTI | ATGAA | 2 cut(s) | 255, 478 |
| TspGWI | ACGGA | 1 cut(s) | 74 |
| TspMI | CCCGGG | 1 cut(s) | 522 |
| TspRI | CASTG | 1 cut(s) | 329 |
| VpaK11BI | GGWCC | 1 cut(s) | 193 |
| XbaI | TCTAGA | 1 cut(s) | 301 |
| XceI | RCATGY | 1 cut(s) | 605 |
| XmaI | CCCGGG | 1 cut(s) | 522 |
| XmnI | GAANNNNTTC | 1 cut(s) | 513 |
| XspI | CTAG | 2 cut(s) | 173, 302 |
| Zsp2I | ATGCAT | 1 cut(s) | 504 |