Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 142 |
| AfaI | GTAC | 1 cut(s) | 298 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 227 |
| AgsI | TTSAA | 5 cut(s) | 89, 122, 153, 293, 320 |
| AjiI | CACGTC | 1 cut(s) | 326 |
| AjnI | CCWGG | 1 cut(s) | 12 |
| AluBI | AGCT | 6 cut(s) | 65, 316, 339, 458, 476, 502 |
| AluI | AGCT | 6 cut(s) | 65, 316, 339, 458, 476, 502 |
| Alw26I | GTCTC | 1 cut(s) | 75 |
| ApeKI | GCWGC | 2 cut(s) | 19, 181 |
| ApoI | RAATTY | 1 cut(s) | 142 |
| AsuHPI | GGTGA | 1 cut(s) | 383 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 244, 276 |
| BbvI | GCAGC | 2 cut(s) | 31, 168 |
| BccI | CCATC | 1 cut(s) | 272 |
| BciT130I | CCWGG | 1 cut(s) | 14 |
| BcoDI | GTCTC | 1 cut(s) | 75 |
| BfaI | CTAG | 2 cut(s) | 173, 459 |
| BisI | GCNGC | 2 cut(s) | 20, 182 |
| BlsI | GCNGC | 2 cut(s) | 21, 183 |
| Bme1390I | CCNGG | 1 cut(s) | 14 |
| BmgBI | CACGTC | 1 cut(s) | 326 |
| BmrFI | CCNGG | 1 cut(s) | 14 |
| BpmI | CTGGAG | 1 cut(s) | 99 |
| BsaI | GGTCTC | 1 cut(s) | 75 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 227 |
| BseBI | CCWGG | 1 cut(s) | 14 |
| BseGI | GGATG | 3 cut(s) | 13, 52, 254 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 227 |
| BseXI | GCAGC | 2 cut(s) | 31, 168 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 227 |
| BsmAI | GTCTC | 1 cut(s) | 75 |
| BsmI | GAATGC | 1 cut(s) | 168 |
| Bso31I | GGTCTC | 1 cut(s) | 75 |
| Bsp143I | GATC | 1 cut(s) | 376 |
| BspTNI | GGTCTC | 1 cut(s) | 75 |
| BssMI | GATC | 1 cut(s) | 376 |
| Bst2UI | CCWGG | 1 cut(s) | 14 |
| Bst4CI | ACNGT | 2 cut(s) | 139, 423 |
| BstC8I | GCNNGC | 1 cut(s) | 212 |
| BstF5I | GGATG | 3 cut(s) | 13, 52, 254 |
| BstKTI | GATC | 1 cut(s) | 379 |
| BstMAI | GTCTC | 1 cut(s) | 75 |
| BstMBI | GATC | 1 cut(s) | 376 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 101 |
| BstNI | CCWGG | 1 cut(s) | 14 |
| BstNSI | RCATGY | 1 cut(s) | 214 |
| BstSCI | CCNGG | 1 cut(s) | 12 |
| BstV1I | GCAGC | 2 cut(s) | 31, 168 |
| BtrI | CACGTC | 1 cut(s) | 326 |
| BtsCI | GGATG | 3 cut(s) | 13, 52, 254 |
| BtsIMutI | CAGTG | 1 cut(s) | 135 |
| Cac8I | GCNNGC | 1 cut(s) | 212 |
| Csp6I | GTAC | 1 cut(s) | 297 |
| CviAII | CATG | 3 cut(s) | 125, 185, 211 |
| CviJI | RGCY | 9 cut(s) | 65, 104, 260, 270, 316, 339, 458, 476, 502 |
| CviKI_1 | RGCY | 9 cut(s) | 65, 104, 260, 270, 316, 339, 458, 476, 502 |
| CviQI | GTAC | 1 cut(s) | 297 |
| DpnI | GATC | 1 cut(s) | 378 |
| DpnII | GATC | 1 cut(s) | 376 |
| Eco31I | GGTCTC | 1 cut(s) | 75 |
| Eco32I | GATATC | 1 cut(s) | 218 |
| EcoRI | GAATTC | 1 cut(s) | 142 |
| EcoRII | CCWGG | 1 cut(s) | 12 |
| EcoRV | GATATC | 1 cut(s) | 218 |
| FaeI | CATG | 3 cut(s) | 128, 188, 214 |
| FaiI | YATR | 9 cut(s) | 126, 186, 212, 254, 345, 347, 399, 451, 506 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 285, 317 |
| FatI | CATG | 3 cut(s) | 124, 184, 210 |
| Fnu4HI | GCNGC | 2 cut(s) | 20, 182 |
| FokI | GGATG | 3 cut(s) | 20, 39, 261 |
| Fsp4HI | GCNGC | 2 cut(s) | 20, 182 |
| FspBI | CTAG | 2 cut(s) | 173, 459 |
| GluI | GCNGC | 2 cut(s) | 20, 182 |
| GsuI | CTGGAG | 1 cut(s) | 99 |
| Hin1II | CATG | 3 cut(s) | 128, 188, 214 |
| HindIII | AAGCTT | 3 cut(s) | 314, 337, 500 |
| HinfI | GANTC | 2 cut(s) | 29, 188 |
| HphI | GGTGA | 1 cut(s) | 383 |
| Hpy166II | GTNNAC | 1 cut(s) | 299 |
| Hpy188III | TCNNGA | 4 cut(s) | 78, 98, 173, 329 |
| Hpy8I | GTNNAC | 1 cut(s) | 299 |
| Hpy99I | CGWCG | 1 cut(s) | 330 |
| HpyAV | CCTTC | 1 cut(s) | 287 |
| HpyCH4III | ACNGT | 2 cut(s) | 139, 423 |
| HpyCH4IV | ACGT | 1 cut(s) | 325 |
| HpyCH4V | TGCA | 5 cut(s) | 168, 184, 210, 349, 364 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 101 |
| HpySE526I | ACGT | 1 cut(s) | 325 |
| Hsp92II | CATG | 3 cut(s) | 128, 188, 214 |
| Kzo9I | GATC | 1 cut(s) | 376 |
| LmnI | GCTCC | 1 cut(s) | 16 |
| LpnPI | CCDG | 3 cut(s) | 26, 63, 231 |
| Lsp1109I | GCAGC | 2 cut(s) | 31, 168 |
| MaeI | CTAG | 2 cut(s) | 173, 459 |
| MaeII | ACGT | 1 cut(s) | 325 |
| MaeIII | GTNAC | 1 cut(s) | 111 |
| MalI | GATC | 1 cut(s) | 378 |
| MboI | GATC | 1 cut(s) | 376 |
| MboII | GAAGA | 2 cut(s) | 386, 405 |
| MluCI | AATT | 2 cut(s) | 142, 413 |
| MmeI | TCCRAC | 1 cut(s) | 329 |
| MnlI | CCTC | 4 cut(s) | 232, 234, 281, 383 |
| MseI | TTAA | 1 cut(s) | 425 |
| MspR9I | CCNGG | 1 cut(s) | 14 |
| Mva1269I | GAATGC | 1 cut(s) | 168 |
| MvaI | CCWGG | 1 cut(s) | 14 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 101 |
| NdeII | GATC | 1 cut(s) | 376 |
| NlaIII | CATG | 3 cut(s) | 128, 188, 214 |
| NspI | RCATGY | 1 cut(s) | 214 |
| PaeI | GCATGC | 1 cut(s) | 214 |
| PctI | GAATGC | 1 cut(s) | 168 |
| PfeI | GAWTC | 2 cut(s) | 29, 188 |
| PfoI | TCCNGGA | 1 cut(s) | 12 |
| PkrI | GCNGC | 2 cut(s) | 21, 183 |
| Psp6I | CCWGG | 1 cut(s) | 12 |
| PspGI | CCWGG | 1 cut(s) | 12 |
| RsaI | GTAC | 1 cut(s) | 298 |
| RsaNI | GTAC | 1 cut(s) | 297 |
| SaqAI | TTAA | 1 cut(s) | 425 |
| SatI | GCNGC | 2 cut(s) | 20, 182 |
| Sau3AI | GATC | 1 cut(s) | 376 |
| ScrFI | CCNGG | 1 cut(s) | 14 |
| SetI | ASST | 9 cut(s) | 67, 87, 298, 318, 328, 341, 460, 478, 504 |
| SphI | GCATGC | 1 cut(s) | 214 |
| Sse9I | AATT | 2 cut(s) | 142, 413 |
| SspMI | CTAG | 2 cut(s) | 173, 459 |
| StyD4I | CCNGG | 1 cut(s) | 12 |
| TaaI | ACNGT | 2 cut(s) | 139, 423 |
| TaiI | ACGT | 1 cut(s) | 328 |
| TaqI | TCGA | 2 cut(s) | 99, 328 |
| TasI | AATT | 2 cut(s) | 142, 413 |
| TfiI | GAWTC | 2 cut(s) | 29, 188 |
| Tru1I | TTAA | 1 cut(s) | 425 |
| Tru9I | TTAA | 1 cut(s) | 425 |
| TscAI | CASTG | 1 cut(s) | 142 |
| TseI | GCWGC | 2 cut(s) | 19, 181 |
| TspDTI | ATGAA | 2 cut(s) | 41, 201 |
| TspRI | CASTG | 1 cut(s) | 142 |
| XapI | RAATTY | 1 cut(s) | 142 |
| XbaI | TCTAGA | 1 cut(s) | 172 |
| XceI | RCATGY | 1 cut(s) | 214 |
| XspI | CTAG | 2 cut(s) | 173, 459 |