ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 444 |
| AccB1I | GGYRCC | 2 cut(s) | 73, 444 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 190 |
| AccBSI | CCGCTC | 1 cut(s) | 530 |
| AccIII | TCCGGA | 1 cut(s) | 304 |
| AciI | CCGC | 2 cut(s) | 289, 530 |
| AclWI | GGATC | 2 cut(s) | 371, 463 |
| AcsI | RAATTY | 1 cut(s) | 573 |
| AfaI | GTAC | 1 cut(s) | 446 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 190, 282 |
| AgsI | TTSAA | 2 cut(s) | 68, 101 |
| AluBI | AGCT | 3 cut(s) | 93, 405, 584 |
| AluI | AGCT | 3 cut(s) | 93, 405, 584 |
| AlwI | GGATC | 2 cut(s) | 371, 463 |
| Aor13HI | TCCGGA | 1 cut(s) | 304 |
| ApeKI | GCWGC | 1 cut(s) | 32 |
| ApoI | RAATTY | 1 cut(s) | 573 |
| Asp718I | GGTACC | 1 cut(s) | 444 |
| AsuHPI | GGTGA | 3 cut(s) | 170, 421, 569 |
| AsuII | TTCGAA | 1 cut(s) | 596 |
| BanI | GGYRCC | 2 cut(s) | 73, 444 |
| BbvI | GCAGC | 1 cut(s) | 19 |
| BccI | CCATC | 1 cut(s) | 184 |
| BceAI | ACGGC | 1 cut(s) | 572 |
| BfaI | CTAG | 3 cut(s) | 272, 381, 525 |
| BfmI | CTRYAG | 2 cut(s) | 33, 369 |
| BisI | GCNGC | 2 cut(s) | 33, 290 |
| BlsI | GCNGC | 2 cut(s) | 34, 291 |
| BmiI | GGNNCC | 3 cut(s) | 75, 446, 495 |
| BmsI | GCATC | 2 cut(s) | 117, 475 |
| Bpu14I | TTCGAA | 1 cut(s) | 596 |
| BsaWI | WCCGGW | 1 cut(s) | 304 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 191, 221 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 190, 282 |
| Bse1I | ACTGG | 2 cut(s) | 14, 191 |
| BseAI | TCCGGA | 1 cut(s) | 304 |
| BseGI | GGATG | 1 cut(s) | 195 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 190, 282 |
| BseNI | ACTGG | 2 cut(s) | 14, 191 |
| BseXI | GCAGC | 1 cut(s) | 19 |
| BshNI | GGYRCC | 2 cut(s) | 73, 444 |
| BsiSI | CCGG | 1 cut(s) | 305 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 190, 282 |
| Bsp119I | TTCGAA | 1 cut(s) | 596 |
| Bsp13I | TCCGGA | 1 cut(s) | 304 |
| Bsp143I | GATC | 2 cut(s) | 376, 455 |
| BspACI | CCGC | 2 cut(s) | 289, 530 |
| BspEI | TCCGGA | 1 cut(s) | 304 |
| BspHI | TCATGA | 1 cut(s) | 87 |
| BspLI | GGNNCC | 3 cut(s) | 75, 446, 495 |
| BspMAI | CTGCAG | 1 cut(s) | 37 |
| BspPI | GGATC | 2 cut(s) | 371, 463 |
| BspT104I | TTCGAA | 1 cut(s) | 596 |
| BspT107I | GGYRCC | 2 cut(s) | 73, 444 |
| BsrBI | CCGCTC | 1 cut(s) | 530 |
| BsrI | ACTGG | 2 cut(s) | 14, 191 |
| BssMI | GATC | 2 cut(s) | 376, 455 |
| Bst4CI | ACNGT | 1 cut(s) | 424 |
| BstBI | TTCGAA | 1 cut(s) | 596 |
| BstC8I | GCNNGC | 1 cut(s) | 366 |
| BstDEI | CTNAG | 1 cut(s) | 26 |
| BstF5I | GGATG | 1 cut(s) | 195 |
| BstKTI | GATC | 2 cut(s) | 379, 458 |
| BstMBI | GATC | 2 cut(s) | 376, 455 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 272 |
| BstNSI | RCATGY | 1 cut(s) | 368 |
| BstSFI | CTRYAG | 2 cut(s) | 33, 369 |
| BstV1I | GCAGC | 1 cut(s) | 19 |
| BstX2I | RGATCY | 1 cut(s) | 455 |
| BstYI | RGATCY | 1 cut(s) | 455 |
| BtsCI | GGATG | 1 cut(s) | 195 |
| BtsIMutI | CAGTG | 2 cut(s) | 184, 429 |
| Cac8I | GCNNGC | 1 cut(s) | 366 |
| CciI | TCATGA | 1 cut(s) | 87 |
| Csp6I | GTAC | 1 cut(s) | 445 |
| CviAII | CATG | 5 cut(s) | 88, 195, 365, 548, 610 |
| CviJI | RGCY | 6 cut(s) | 93, 275, 292, 374, 405, 584 |
| CviKI_1 | RGCY | 6 cut(s) | 93, 275, 292, 374, 405, 584 |
| CviQI | GTAC | 1 cut(s) | 445 |
| DdeI | CTNAG | 1 cut(s) | 26 |
| DpnI | GATC | 2 cut(s) | 378, 457 |
| DpnII | GATC | 2 cut(s) | 376, 455 |
| Eco32I | GATATC | 1 cut(s) | 545 |
| EcoRV | GATATC | 1 cut(s) | 545 |
| FaeI | CATG | 5 cut(s) | 91, 198, 368, 551, 613 |
| FatI | CATG | 5 cut(s) | 87, 194, 364, 547, 609 |
| FauNDI | CATATG | 1 cut(s) | 82 |
| Fnu4HI | GCNGC | 2 cut(s) | 33, 290 |
| FokI | GGATG | 1 cut(s) | 202 |
| Fsp4HI | GCNGC | 2 cut(s) | 33, 290 |
| FspBI | CTAG | 3 cut(s) | 272, 381, 525 |
| GluI | GCNGC | 2 cut(s) | 33, 290 |
| HapII | CCGG | 1 cut(s) | 305 |
| Hin1II | CATG | 5 cut(s) | 91, 198, 368, 551, 613 |
| HindIII | AAGCTT | 2 cut(s) | 403, 582 |
| HinfI | GANTC | 3 cut(s) | 161, 308, 386 |
| HpaII | CCGG | 1 cut(s) | 305 |
| HphI | GGTGA | 3 cut(s) | 170, 421, 569 |
| Hpy188I | TCNGA | 4 cut(s) | 145, 166, 216, 571 |
| Hpy188III | TCNNGA | 4 cut(s) | 88, 241, 305, 525 |
| HpyAV | CCTTC | 3 cut(s) | 7, 34, 218 |
| HpyCH4III | ACNGT | 1 cut(s) | 424 |
| HpyCH4V | TGCA | 5 cut(s) | 35, 130, 266, 364, 554 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 272 |
| HpyF3I | CTNAG | 1 cut(s) | 26 |
| Hsp92II | CATG | 5 cut(s) | 91, 198, 368, 551, 613 |
| Kpn2I | TCCGGA | 1 cut(s) | 304 |
| KpnI | GGTACC | 1 cut(s) | 448 |
| Kzo9I | GATC | 2 cut(s) | 376, 455 |
| LpnPI | CCDG | 6 cut(s) | 21, 136, 172, 226, 318, 444 |
| Lsp1109I | GCAGC | 1 cut(s) | 19 |
| LweI | GCATC | 2 cut(s) | 117, 475 |
| MaeI | CTAG | 3 cut(s) | 272, 381, 525 |
| MaeIII | GTNAC | 2 cut(s) | 158, 383 |
| MalI | GATC | 2 cut(s) | 378, 457 |
| MbiI | CCGCTC | 1 cut(s) | 530 |
| MboI | GATC | 2 cut(s) | 376, 455 |
| MboII | GAAGA | 4 cut(s) | 16, 214, 233, 585 |
| MflI | RGATCY | 1 cut(s) | 455 |
| MluCI | AATT | 3 cut(s) | 45, 101, 573 |
| MlyI | GAGTC | 3 cut(s) | 155, 302, 380 |
| MmeI | TCCRAC | 2 cut(s) | 123, 433 |
| MnlI | CCTC | 1 cut(s) | 606 |
| MroI | TCCGGA | 1 cut(s) | 304 |
| MseI | TTAA | 2 cut(s) | 258, 329 |
| MslI | CAYNNNNRTG | 1 cut(s) | 614 |
| MspI | CCGG | 1 cut(s) | 305 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 272 |
| NdeI | CATATG | 1 cut(s) | 82 |
| NdeII | GATC | 2 cut(s) | 376, 455 |
| NlaIII | CATG | 5 cut(s) | 91, 198, 368, 551, 613 |
| NlaIV | GGNNCC | 3 cut(s) | 75, 446, 495 |
| NmuCI | GTSAC | 2 cut(s) | 158, 383 |
| NspI | RCATGY | 1 cut(s) | 368 |
| NspV | TTCGAA | 1 cut(s) | 596 |
| PaeI | GCATGC | 1 cut(s) | 368 |
| PagI | TCATGA | 1 cut(s) | 87 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 190 |
| PkrI | GCNGC | 2 cut(s) | 34, 291 |
| PleI | GAGTC | 3 cut(s) | 155, 302, 380 |
| PpsI | GAGTC | 3 cut(s) | 155, 302, 380 |
| PspN4I | GGNNCC | 3 cut(s) | 75, 446, 495 |
| PstI | CTGCAG | 1 cut(s) | 37 |
| PsuI | RGATCY | 1 cut(s) | 455 |
| RsaI | GTAC | 1 cut(s) | 446 |
| RsaNI | GTAC | 1 cut(s) | 445 |
| RseI | CAYNNNNRTG | 1 cut(s) | 614 |
| SaqAI | TTAA | 2 cut(s) | 258, 329 |
| SatI | GCNGC | 2 cut(s) | 33, 290 |
| Sau3AI | GATC | 2 cut(s) | 376, 455 |
| SchI | GAGTC | 3 cut(s) | 155, 302, 380 |
| SetI | ASST | 7 cut(s) | 95, 329, 407, 446, 512, 520, 586 |
| SfaNI | GCATC | 2 cut(s) | 117, 475 |
| SfcI | CTRYAG | 2 cut(s) | 33, 369 |
| SfuI | TTCGAA | 1 cut(s) | 596 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 614 |
| SphI | GCATGC | 1 cut(s) | 368 |
| Sse9I | AATT | 3 cut(s) | 45, 101, 573 |
| SsiI | CCGC | 2 cut(s) | 289, 530 |
| SspI | AATATT | 1 cut(s) | 469 |
| SspMI | CTAG | 3 cut(s) | 272, 381, 525 |
| TaaI | ACNGT | 1 cut(s) | 424 |
| TaqI | TCGA | 2 cut(s) | 514, 596 |
| TasI | AATT | 3 cut(s) | 45, 101, 573 |
| TauI | GCSGC | 1 cut(s) | 292 |
| Tru1I | TTAA | 2 cut(s) | 258, 329 |
| Tru9I | TTAA | 2 cut(s) | 258, 329 |
| TscAI | CASTG | 2 cut(s) | 191, 429 |
| TseFI | GTSAC | 2 cut(s) | 158, 383 |
| TseI | GCWGC | 1 cut(s) | 32 |
| Tsp45I | GTSAC | 2 cut(s) | 158, 383 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 2 cut(s) | 191, 429 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 190 |
| XapI | RAATTY | 1 cut(s) | 573 |
| XbaI | TCTAGA | 1 cut(s) | 524 |
| XceI | RCATGY | 1 cut(s) | 368 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 455 |
| XspI | CTAG | 3 cut(s) | 272, 381, 525 |