Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 121 |
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AciI | CCGC | 1 cut(s) | 88 |
| AclWI | GGATC | 1 cut(s) | 392 |
| AcsI | RAATTY | 2 cut(s) | 306, 335 |
| AcuI | CTGAAG | 1 cut(s) | 318 |
| AfaI | GTAC | 3 cut(s) | 123, 160, 377 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 192 |
| AgsI | TTSAA | 3 cut(s) | 44, 457, 492 |
| AhlI | ACTAGT | 1 cut(s) | 161 |
| AjnI | CCWGG | 2 cut(s) | 32, 124 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 92, 124 |
| AluBI | AGCT | 5 cut(s) | 68, 214, 346, 476, 549 |
| AluI | AGCT | 5 cut(s) | 68, 214, 346, 476, 549 |
| Alw26I | GTCTC | 2 cut(s) | 521, 583 |
| AlwI | GGATC | 1 cut(s) | 392 |
| AoxI | GGCC | 2 cut(s) | 114, 183 |
| ApeKI | GCWGC | 3 cut(s) | 500, 546, 549 |
| ApoI | RAATTY | 2 cut(s) | 306, 335 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 461, 493 |
| AseI | ATTAAT | 1 cut(s) | 597 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 538, 634 |
| Asp718I | GGTACC | 1 cut(s) | 121 |
| AspLEI | GCGC | 1 cut(s) | 439 |
| AspS9I | GGNCC | 1 cut(s) | 114 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| BbsI | GAAGAC | 1 cut(s) | 252 |
| BbvI | GCAGC | 3 cut(s) | 512, 536, 558 |
| BccI | CCATC | 2 cut(s) | 241, 451 |
| BciT130I | CCWGG | 2 cut(s) | 34, 126 |
| BcoDI | GTCTC | 2 cut(s) | 521, 583 |
| BcuI | ACTAGT | 1 cut(s) | 161 |
| BfaI | CTAG | 3 cut(s) | 47, 65, 162 |
| BisI | GCNGC | 3 cut(s) | 501, 547, 550 |
| BlsI | GCNGC | 3 cut(s) | 502, 548, 551 |
| Bme1390I | CCNGG | 2 cut(s) | 34, 126 |
| BmgT120I | GGNCC | 1 cut(s) | 114 |
| BmiI | GGNNCC | 2 cut(s) | 115, 123 |
| BmrFI | CCNGG | 2 cut(s) | 34, 126 |
| BpiI | GAAGAC | 1 cut(s) | 252 |
| BpuEI | CTTGAG | 1 cut(s) | 208 |
| BsaJI | CCNNGG | 2 cut(s) | 33, 117 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 465, 495 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 192 |
| Bse1I | ACTGG | 2 cut(s) | 379, 535 |
| Bse3DI | GCAATG | 1 cut(s) | 469 |
| BseBI | CCWGG | 2 cut(s) | 34, 126 |
| BseDI | CCNNGG | 2 cut(s) | 33, 117 |
| BseGI | GGATG | 2 cut(s) | 224, 454 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 192 |
| BseMI | GCAATG | 1 cut(s) | 469 |
| BseNI | ACTGG | 2 cut(s) | 379, 535 |
| BseXI | GCAGC | 3 cut(s) | 512, 536, 558 |
| BshFI | GGCC | 2 cut(s) | 116, 185 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 192 |
| BsmAI | GTCTC | 2 cut(s) | 521, 583 |
| BsmBI | CGTCTC | 1 cut(s) | 583 |
| BsnI | GGCC | 2 cut(s) | 116, 185 |
| Bsp143I | GATC | 2 cut(s) | 79, 397 |
| BspACI | CCGC | 1 cut(s) | 88 |
| BspANI | GGCC | 2 cut(s) | 116, 185 |
| BspLI | GGNNCC | 2 cut(s) | 115, 123 |
| BspPI | GGATC | 1 cut(s) | 392 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BsrDI | GCAATG | 1 cut(s) | 469 |
| BsrI | ACTGG | 2 cut(s) | 379, 535 |
| BssECI | CCNNGG | 2 cut(s) | 33, 117 |
| BssMI | GATC | 2 cut(s) | 79, 397 |
| BssT1I | CCWWGG | 1 cut(s) | 117 |
| Bst2UI | CCWGG | 2 cut(s) | 34, 126 |
| Bst6I | CTCTTC | 1 cut(s) | 640 |
| BstC8I | GCNNGC | 1 cut(s) | 618 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 190 |
| BstF5I | GGATG | 2 cut(s) | 224, 454 |
| BstHHI | GCGC | 1 cut(s) | 439 |
| BstKTI | GATC | 2 cut(s) | 82, 400 |
| BstMAI | GTCTC | 2 cut(s) | 521, 583 |
| BstMBI | GATC | 2 cut(s) | 79, 397 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 143, 473, 482, 555 |
| BstNI | CCWGG | 2 cut(s) | 34, 126 |
| BstNSI | RCATGY | 2 cut(s) | 146, 620 |
| BstSCI | CCNGG | 2 cut(s) | 32, 124 |
| BstV1I | GCAGC | 3 cut(s) | 512, 536, 558 |
| BstV2I | GAAGAC | 1 cut(s) | 252 |
| BsuRI | GGCC | 2 cut(s) | 116, 185 |
| BtsCI | GGATG | 2 cut(s) | 224, 454 |
| Cac8I | GCNNGC | 1 cut(s) | 618 |
| CfoI | GCGC | 1 cut(s) | 439 |
| Cfr13I | GGNCC | 1 cut(s) | 114 |
| CseI | GACGC | 1 cut(s) | 609 |
| Csp6I | GTAC | 3 cut(s) | 122, 159, 376 |
| CviAII | CATG | 3 cut(s) | 143, 147, 617 |
| CviQI | GTAC | 3 cut(s) | 122, 159, 376 |
| DpnI | GATC | 2 cut(s) | 81, 399 |
| DpnII | GATC | 2 cut(s) | 79, 397 |
| Eam1104I | CTCTTC | 1 cut(s) | 640 |
| EarI | CTCTTC | 1 cut(s) | 640 |
| EciI | GGCGGA | 1 cut(s) | 77 |
| Eco130I | CCWWGG | 1 cut(s) | 117 |
| Eco57I | CTGAAG | 1 cut(s) | 318 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 190 |
| EcoRI | GAATTC | 1 cut(s) | 335 |
| EcoRII | CCWGG | 2 cut(s) | 32, 124 |
| EcoT14I | CCWWGG | 1 cut(s) | 117 |
| EcoT22I | ATGCAT | 1 cut(s) | 148 |
| ErhI | CCWWGG | 1 cut(s) | 117 |
| Esp3I | CGTCTC | 1 cut(s) | 583 |
| FaeI | CATG | 3 cut(s) | 146, 150, 620 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 237, 269 |
| FatI | CATG | 3 cut(s) | 142, 146, 616 |
| Fnu4HI | GCNGC | 3 cut(s) | 501, 547, 550 |
| FokI | GGATG | 2 cut(s) | 231, 461 |
| Fsp4HI | GCNGC | 3 cut(s) | 501, 547, 550 |
| FspBI | CTAG | 3 cut(s) | 47, 65, 162 |
| GlaI | GCGC | 1 cut(s) | 438 |
| GluI | GCNGC | 3 cut(s) | 501, 547, 550 |
| HaeIII | GGCC | 2 cut(s) | 116, 185 |
| HgaI | GACGC | 1 cut(s) | 609 |
| HhaI | GCGC | 1 cut(s) | 439 |
| Hin1II | CATG | 3 cut(s) | 146, 150, 620 |
| Hin6I | GCGC | 1 cut(s) | 437 |
| HinP1I | GCGC | 1 cut(s) | 437 |
| HinfI | GANTC | 3 cut(s) | 248, 317, 488 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188I | TCNGA | 4 cut(s) | 298, 312, 341, 448 |
| Hpy188III | TCNNGA | 1 cut(s) | 492 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| HpyAV | CCTTC | 1 cut(s) | 489 |
| HpyCH4V | TGCA | 8 cut(s) | 20, 146, 281, 370, 386, 462, 552, 627 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 143, 473, 482, 555 |
| Hsp92II | CATG | 3 cut(s) | 146, 150, 620 |
| HspAI | GCGC | 1 cut(s) | 437 |
| KpnI | GGTACC | 1 cut(s) | 125 |
| Kzo9I | GATC | 2 cut(s) | 79, 397 |
| LmnI | GCTCC | 3 cut(s) | 211, 473, 563 |
| LpnPI | CCDG | 9 cut(s) | 19, 46, 111, 138, 392, 415, 497, 516, 528 |
| Lsp1109I | GCAGC | 3 cut(s) | 512, 536, 558 |
| MaeI | CTAG | 3 cut(s) | 47, 65, 162 |
| MaeIII | GTNAC | 1 cut(s) | 328 |
| MalI | GATC | 2 cut(s) | 81, 399 |
| MboI | GATC | 2 cut(s) | 79, 397 |
| MboII | GAAGA | 2 cut(s) | 257, 627 |
| MluCI | AATT | 3 cut(s) | 306, 335, 594 |
| MlyI | GAGTC | 1 cut(s) | 242 |
| MmeI | TCCRAC | 1 cut(s) | 589 |
| MnlI | CCTC | 3 cut(s) | 171, 417, 559 |
| Mph1103I | ATGCAT | 1 cut(s) | 148 |
| MroXI | GAANNNNTTC | 2 cut(s) | 538, 634 |
| MseI | TTAA | 1 cut(s) | 597 |
| MslI | CAYNNNNRTG | 1 cut(s) | 151 |
| MspA1I | CMGCKG | 1 cut(s) | 549 |
| MspR9I | CCNGG | 2 cut(s) | 34, 126 |
| MvaI | CCWGG | 2 cut(s) | 34, 126 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 143, 473, 482, 555 |
| NdeII | GATC | 2 cut(s) | 79, 397 |
| NlaIII | CATG | 3 cut(s) | 146, 150, 620 |
| NlaIV | GGNNCC | 2 cut(s) | 115, 123 |
| NsiI | ATGCAT | 1 cut(s) | 148 |
| NspI | RCATGY | 2 cut(s) | 146, 620 |
| PaeI | GCATGC | 1 cut(s) | 620 |
| PdmI | GAANNNNTTC | 2 cut(s) | 538, 634 |
| PfeI | GAWTC | 2 cut(s) | 317, 488 |
| PkrI | GCNGC | 3 cut(s) | 502, 548, 551 |
| PleI | GAGTC | 1 cut(s) | 242 |
| PpsI | GAGTC | 1 cut(s) | 242 |
| PshBI | ATTAAT | 1 cut(s) | 597 |
| Psp6I | CCWGG | 2 cut(s) | 32, 124 |
| PspGI | CCWGG | 2 cut(s) | 32, 124 |
| PspN4I | GGNNCC | 2 cut(s) | 115, 123 |
| PspPI | GGNCC | 1 cut(s) | 114 |
| PvuII | CAGCTG | 1 cut(s) | 549 |
| RsaI | GTAC | 3 cut(s) | 123, 160, 377 |
| RsaNI | GTAC | 3 cut(s) | 122, 159, 376 |
| RseI | CAYNNNNRTG | 1 cut(s) | 151 |
| SaqAI | TTAA | 1 cut(s) | 597 |
| SatI | GCNGC | 3 cut(s) | 501, 547, 550 |
| Sau3AI | GATC | 2 cut(s) | 79, 397 |
| Sau96I | GGNCC | 1 cut(s) | 114 |
| SchI | GAGTC | 1 cut(s) | 242 |
| ScrFI | CCNGG | 2 cut(s) | 34, 126 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 151 |
| SmlI | CTYRAG | 1 cut(s) | 187 |
| SmoI | CTYRAG | 1 cut(s) | 187 |
| SpeI | ACTAGT | 1 cut(s) | 161 |
| SphI | GCATGC | 1 cut(s) | 620 |
| Sse9I | AATT | 3 cut(s) | 306, 335, 594 |
| SsiI | CCGC | 1 cut(s) | 88 |
| SspMI | CTAG | 3 cut(s) | 47, 65, 162 |
| StyD4I | CCNGG | 2 cut(s) | 32, 124 |
| StyI | CCWWGG | 1 cut(s) | 117 |
| TasI | AATT | 3 cut(s) | 306, 335, 594 |
| TatI | WGTACW | 1 cut(s) | 158 |
| TfiI | GAWTC | 2 cut(s) | 317, 488 |
| Tru1I | TTAA | 1 cut(s) | 597 |
| Tru9I | TTAA | 1 cut(s) | 597 |
| TseI | GCWGC | 3 cut(s) | 500, 546, 549 |
| TspGWI | ACGGA | 1 cut(s) | 486 |
| VspI | ATTAAT | 1 cut(s) | 597 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 190 |
| XapI | RAATTY | 2 cut(s) | 306, 335 |
| XceI | RCATGY | 2 cut(s) | 146, 620 |
| XmnI | GAANNNNTTC | 2 cut(s) | 538, 634 |
| XspI | CTAG | 3 cut(s) | 47, 65, 162 |
| Zsp2I | ATGCAT | 1 cut(s) | 148 |