Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 5 - 65 | 6.2e-12 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 58 |
| AfaI | GTAC | 3 cut(s) | 205, 276, 410 |
| AflIII | ACRYGT | 1 cut(s) | 97 |
| AjnI | CCWGG | 1 cut(s) | 114 |
| AluBI | AGCT | 4 cut(s) | 39, 106, 221, 292 |
| AluI | AGCT | 4 cut(s) | 39, 106, 221, 292 |
| Alw26I | GTCTC | 1 cut(s) | 88 |
| AoxI | GGCC | 1 cut(s) | 211 |
| ApeKI | GCWGC | 2 cut(s) | 311, 380 |
| AspLEI | GCGC | 3 cut(s) | 58, 125, 286 |
| AspS9I | GGNCC | 1 cut(s) | 211 |
| AsuHPI | GGTGA | 2 cut(s) | 221, 433 |
| AxyI | CCTNAGG | 1 cut(s) | 27 |
| BaeGI | GKGCMC | 2 cut(s) | 16, 372 |
| BbvI | GCAGC | 2 cut(s) | 298, 367 |
| BccI | CCATC | 1 cut(s) | 262 |
| BciT130I | CCWGG | 1 cut(s) | 116 |
| BciVI | GTATCC | 1 cut(s) | 12 |
| BcoDI | GTCTC | 1 cut(s) | 88 |
| BfaI | CTAG | 2 cut(s) | 222, 293 |
| BfuI | GTATCC | 1 cut(s) | 12 |
| BisI | GCNGC | 2 cut(s) | 312, 381 |
| BlsI | GCNGC | 2 cut(s) | 313, 382 |
| Bme1390I | CCNGG | 1 cut(s) | 116 |
| BmgT120I | GGNCC | 1 cut(s) | 211 |
| BmrFI | CCNGG | 1 cut(s) | 116 |
| Bsa29I | ATCGAT | 1 cut(s) | 453 |
| Bse1I | ACTGG | 2 cut(s) | 90, 232 |
| Bse21I | CCTNAGG | 1 cut(s) | 27 |
| Bse3DI | GCAATG | 1 cut(s) | 181 |
| BseBI | CCWGG | 1 cut(s) | 116 |
| BseCI | ATCGAT | 1 cut(s) | 453 |
| BseMI | GCAATG | 1 cut(s) | 181 |
| BseNI | ACTGG | 2 cut(s) | 90, 232 |
| BseSI | GKGCMC | 2 cut(s) | 16, 372 |
| BseXI | GCAGC | 2 cut(s) | 298, 367 |
| Bsh1236I | CGCG | 1 cut(s) | 58 |
| BshFI | GGCC | 1 cut(s) | 213 |
| BshVI | ATCGAT | 1 cut(s) | 453 |
| BsmAI | GTCTC | 1 cut(s) | 88 |
| BsnI | GGCC | 1 cut(s) | 213 |
| Bsp1286I | GDGCHC | 2 cut(s) | 16, 372 |
| BspANI | GGCC | 1 cut(s) | 213 |
| BspDI | ATCGAT | 1 cut(s) | 453 |
| BspFNI | CGCG | 1 cut(s) | 58 |
| BsrDI | GCAATG | 1 cut(s) | 181 |
| BsrI | ACTGG | 2 cut(s) | 90, 232 |
| Bst2UI | CCWGG | 1 cut(s) | 116 |
| Bst4CI | ACNGT | 1 cut(s) | 203 |
| BstC8I | GCNNGC | 2 cut(s) | 187, 378 |
| BstDEI | CTNAG | 1 cut(s) | 27 |
| BstFNI | CGCG | 1 cut(s) | 58 |
| BstHHI | GCGC | 3 cut(s) | 58, 125, 286 |
| BstMAI | GTCTC | 1 cut(s) | 88 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 129 |
| BstNI | CCWGG | 1 cut(s) | 116 |
| BstNSI | RCATGY | 2 cut(s) | 101, 380 |
| BstSCI | CCNGG | 1 cut(s) | 114 |
| BstSLI | GKGCMC | 2 cut(s) | 16, 372 |
| BstUI | CGCG | 1 cut(s) | 58 |
| BstV1I | GCAGC | 2 cut(s) | 298, 367 |
| Bsu15I | ATCGAT | 1 cut(s) | 453 |
| Bsu36I | CCTNAGG | 1 cut(s) | 27 |
| BsuI | GTATCC | 1 cut(s) | 12 |
| BsuRI | GGCC | 1 cut(s) | 213 |
| BsuTUI | ATCGAT | 1 cut(s) | 453 |
| BtsIMutI | CAGTG | 1 cut(s) | 83 |
| Cac8I | GCNNGC | 2 cut(s) | 187, 378 |
| CfoI | GCGC | 3 cut(s) | 58, 125, 286 |
| Cfr13I | GGNCC | 1 cut(s) | 211 |
| ClaI | ATCGAT | 1 cut(s) | 453 |
| CseI | GACGC | 1 cut(s) | 372 |
| CsiI | ACCWGGT | 1 cut(s) | 114 |
| Csp6I | GTAC | 3 cut(s) | 204, 275, 409 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 309, 344 |
| CviAII | CATG | 5 cut(s) | 98, 265, 307, 377, 404 |
| CviJI | RGCY | 8 cut(s) | 25, 39, 106, 185, 213, 221, 292, 311 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 39, 106, 185, 213, 221, 292, 311 |
| CviQI | GTAC | 3 cut(s) | 204, 275, 409 |
| DdeI | CTNAG | 1 cut(s) | 27 |
| DraI | TTTAAA | 1 cut(s) | 166 |
| Eco81I | CCTNAGG | 1 cut(s) | 27 |
| EcoRII | CCWGG | 1 cut(s) | 114 |
| FaeI | CATG | 5 cut(s) | 101, 268, 310, 380, 407 |
| FaiI | YATR | 6 cut(s) | 99, 199, 266, 308, 378, 405 |
| FatI | CATG | 5 cut(s) | 97, 264, 306, 376, 403 |
| Fnu4HI | GCNGC | 2 cut(s) | 312, 381 |
| Fsp4HI | GCNGC | 2 cut(s) | 312, 381 |
| FspBI | CTAG | 2 cut(s) | 222, 293 |
| GlaI | GCGC | 3 cut(s) | 57, 124, 285 |
| GluI | GCNGC | 2 cut(s) | 312, 381 |
| HaeIII | GGCC | 1 cut(s) | 213 |
| HgaI | GACGC | 1 cut(s) | 372 |
| HhaI | GCGC | 3 cut(s) | 58, 125, 286 |
| Hin1II | CATG | 5 cut(s) | 101, 268, 310, 380, 407 |
| Hin6I | GCGC | 3 cut(s) | 56, 123, 284 |
| HinP1I | GCGC | 3 cut(s) | 56, 123, 284 |
| HindIII | AAGCTT | 1 cut(s) | 37 |
| HinfI | GANTC | 1 cut(s) | 397 |
| HphI | GGTGA | 2 cut(s) | 221, 433 |
| Hpy188III | TCNNGA | 1 cut(s) | 349 |
| HpyAV | CCTTC | 1 cut(s) | 128 |
| HpyCH4III | ACNGT | 1 cut(s) | 203 |
| HpyCH4IV | ACGT | 1 cut(s) | 206 |
| HpyCH4V | TGCA | 4 cut(s) | 9, 174, 376, 418 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 129 |
| HpyF3I | CTNAG | 1 cut(s) | 27 |
| HpySE526I | ACGT | 1 cut(s) | 206 |
| Hsp92II | CATG | 5 cut(s) | 101, 268, 310, 380, 407 |
| HspAI | GCGC | 3 cut(s) | 56, 123, 284 |
| LpnPI | CCDG | 7 cut(s) | 71, 101, 116, 128, 234, 245, 334 |
| Lsp1109I | GCAGC | 2 cut(s) | 298, 367 |
| MabI | ACCWGGT | 1 cut(s) | 114 |
| MaeI | CTAG | 2 cut(s) | 222, 293 |
| MaeII | ACGT | 1 cut(s) | 206 |
| MaeIII | GTNAC | 3 cut(s) | 359, 425, 439 |
| MboII | GAAGA | 1 cut(s) | 295 |
| MhlI | GDGCHC | 2 cut(s) | 16, 372 |
| MluCI | AATT | 3 cut(s) | 169, 321, 431 |
| MmeI | TCCRAC | 3 cut(s) | 95, 123, 233 |
| MnlI | CCTC | 4 cut(s) | 42, 73, 250, 265 |
| MseI | TTAA | 2 cut(s) | 165, 216 |
| MspR9I | CCNGG | 1 cut(s) | 116 |
| MvaI | CCWGG | 1 cut(s) | 116 |
| MvnI | CGCG | 1 cut(s) | 58 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 129 |
| NlaIII | CATG | 5 cut(s) | 101, 268, 310, 380, 407 |
| NmuCI | GTSAC | 3 cut(s) | 359, 425, 439 |
| NspI | RCATGY | 2 cut(s) | 101, 380 |
| PaeI | GCATGC | 1 cut(s) | 380 |
| PciI | ACATGT | 1 cut(s) | 97 |
| PfeI | GAWTC | 1 cut(s) | 397 |
| PkrI | GCNGC | 2 cut(s) | 313, 382 |
| PscI | ACATGT | 1 cut(s) | 97 |
| Psp6I | CCWGG | 1 cut(s) | 114 |
| PspGI | CCWGG | 1 cut(s) | 114 |
| PspPI | GGNCC | 1 cut(s) | 211 |
| RsaI | GTAC | 3 cut(s) | 205, 276, 410 |
| RsaNI | GTAC | 3 cut(s) | 204, 275, 409 |
| SaqAI | TTAA | 2 cut(s) | 165, 216 |
| SatI | GCNGC | 2 cut(s) | 312, 381 |
| Sau96I | GGNCC | 1 cut(s) | 211 |
| ScrFI | CCNGG | 1 cut(s) | 116 |
| SduI | GDGCHC | 2 cut(s) | 16, 372 |
| SetI | ASST | 9 cut(s) | 33, 41, 53, 108, 120, 209, 223, 276, 294 |
| SexAI | ACCWGGT | 1 cut(s) | 114 |
| SphI | GCATGC | 1 cut(s) | 380 |
| Sse9I | AATT | 3 cut(s) | 169, 321, 431 |
| SspMI | CTAG | 2 cut(s) | 222, 293 |
| StyD4I | CCNGG | 1 cut(s) | 114 |
| TaaI | ACNGT | 1 cut(s) | 203 |
| TaiI | ACGT | 1 cut(s) | 209 |
| TaqI | TCGA | 3 cut(s) | 280, 392, 453 |
| TasI | AATT | 3 cut(s) | 169, 321, 431 |
| TfiI | GAWTC | 1 cut(s) | 397 |
| Tru1I | TTAA | 2 cut(s) | 165, 216 |
| Tru9I | TTAA | 2 cut(s) | 165, 216 |
| TscAI | CASTG | 1 cut(s) | 90 |
| TseFI | GTSAC | 3 cut(s) | 359, 425, 439 |
| TseI | GCWGC | 2 cut(s) | 311, 380 |
| Tsp45I | GTSAC | 3 cut(s) | 359, 425, 439 |
| TspDTI | ATGAA | 3 cut(s) | 31, 295, 410 |
| TspGWI | ACGGA | 1 cut(s) | 31 |
| TspRI | CASTG | 1 cut(s) | 90 |
| XceI | RCATGY | 2 cut(s) | 101, 380 |
| XspI | CTAG | 2 cut(s) | 222, 293 |