Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 280 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 112 |
| AcsI | RAATTY | 2 cut(s) | 109, 370 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 52, 112, 310 |
| AgsI | TTSAA | 3 cut(s) | 65, 71, 103 |
| AjnI | CCWGG | 1 cut(s) | 294 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 95, 127 |
| AluBI | AGCT | 1 cut(s) | 233 |
| AluI | AGCT | 1 cut(s) | 233 |
| Ama87I | CYCGRG | 2 cut(s) | 330, 355 |
| ApoI | RAATTY | 2 cut(s) | 109, 370 |
| AseI | ATTAAT | 1 cut(s) | 189 |
| AspLEI | GCGC | 1 cut(s) | 138 |
| AsuHPI | GGTGA | 1 cut(s) | 227 |
| AvaI | CYCGRG | 2 cut(s) | 330, 355 |
| BanI | GGYRCC | 1 cut(s) | 280 |
| BbsI | GAAGAC | 1 cut(s) | 123 |
| BccI | CCATC | 2 cut(s) | 82, 143 |
| BciT130I | CCWGG | 1 cut(s) | 296 |
| BfaI | CTAG | 2 cut(s) | 243, 272 |
| BglII | AGATCT | 1 cut(s) | 122 |
| Bme1390I | CCNGG | 1 cut(s) | 296 |
| BmeT110I | CYCGRG | 2 cut(s) | 330, 355 |
| BmiI | GGNNCC | 1 cut(s) | 282 |
| BmrFI | CCNGG | 1 cut(s) | 296 |
| BpiI | GAAGAC | 1 cut(s) | 123 |
| Bsa29I | ATCGAT | 1 cut(s) | 144 |
| BsaJI | CCNNGG | 1 cut(s) | 46 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 52, 112, 310 |
| BseBI | CCWGG | 1 cut(s) | 296 |
| BseCI | ATCGAT | 1 cut(s) | 144 |
| BseDI | CCNNGG | 1 cut(s) | 46 |
| BseGI | GGATG | 2 cut(s) | 61, 304 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 52, 112, 310 |
| BshNI | GGYRCC | 1 cut(s) | 280 |
| BshVI | ATCGAT | 1 cut(s) | 144 |
| BsiHKCI | CYCGRG | 2 cut(s) | 330, 355 |
| BslFI | GGGAC | 1 cut(s) | 334 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 52, 112, 310 |
| BsmFI | GGGAC | 1 cut(s) | 334 |
| BsoBI | CYCGRG | 2 cut(s) | 330, 355 |
| Bsp143I | GATC | 1 cut(s) | 122 |
| BspDI | ATCGAT | 1 cut(s) | 144 |
| BspLI | GGNNCC | 1 cut(s) | 282 |
| BspT107I | GGYRCC | 1 cut(s) | 280 |
| BssECI | CCNNGG | 1 cut(s) | 46 |
| BssMI | GATC | 1 cut(s) | 122 |
| BssT1I | CCWWGG | 1 cut(s) | 46 |
| Bst2UI | CCWGG | 1 cut(s) | 296 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 308 |
| BstF5I | GGATG | 2 cut(s) | 61, 304 |
| BstHHI | GCGC | 1 cut(s) | 138 |
| BstKTI | GATC | 1 cut(s) | 125 |
| BstMBI | GATC | 1 cut(s) | 122 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 239 |
| BstNI | CCWGG | 1 cut(s) | 296 |
| BstSCI | CCNGG | 1 cut(s) | 294 |
| BstV2I | GAAGAC | 1 cut(s) | 123 |
| BstX2I | RGATCY | 1 cut(s) | 122 |
| BstYI | RGATCY | 1 cut(s) | 122 |
| Bsu15I | ATCGAT | 1 cut(s) | 144 |
| BsuTUI | ATCGAT | 1 cut(s) | 144 |
| BtsCI | GGATG | 2 cut(s) | 61, 304 |
| BtsIMutI | CAGTG | 1 cut(s) | 83 |
| CfoI | GCGC | 1 cut(s) | 138 |
| ClaI | ATCGAT | 1 cut(s) | 144 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 198, 233 |
| CviAII | CATG | 1 cut(s) | 194 |
| CviJI | RGCY | 5 cut(s) | 38, 221, 233, 271, 342 |
| CviKI_1 | RGCY | 5 cut(s) | 38, 221, 233, 271, 342 |
| DpnI | GATC | 1 cut(s) | 124 |
| DpnII | GATC | 1 cut(s) | 122 |
| Eco130I | CCWWGG | 1 cut(s) | 46 |
| Eco88I | CYCGRG | 2 cut(s) | 330, 355 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 308 |
| EcoRII | CCWGG | 1 cut(s) | 294 |
| EcoT14I | CCWWGG | 1 cut(s) | 46 |
| ErhI | CCWWGG | 1 cut(s) | 46 |
| FaeI | CATG | 1 cut(s) | 197 |
| FaiI | YATR | 5 cut(s) | 195, 225, 309, 347, 363 |
| FaqI | GGGAC | 1 cut(s) | 334 |
| FatI | CATG | 1 cut(s) | 193 |
| FokI | GGATG | 2 cut(s) | 68, 311 |
| FspBI | CTAG | 2 cut(s) | 243, 272 |
| GlaI | GCGC | 1 cut(s) | 137 |
| HhaI | GCGC | 1 cut(s) | 138 |
| Hin1II | CATG | 1 cut(s) | 197 |
| Hin6I | GCGC | 1 cut(s) | 136 |
| HinP1I | GCGC | 1 cut(s) | 136 |
| HphI | GGTGA | 1 cut(s) | 227 |
| Hpy188I | TCNGA | 2 cut(s) | 127, 186 |
| Hpy188III | TCNNGA | 1 cut(s) | 357 |
| HpyCH4V | TGCA | 1 cut(s) | 380 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 239 |
| Hsp92II | CATG | 1 cut(s) | 197 |
| HspAI | GCGC | 1 cut(s) | 136 |
| Kzo9I | GATC | 1 cut(s) | 122 |
| LpnPI | CCDG | 5 cut(s) | 9, 119, 281, 297, 308 |
| MaeI | CTAG | 2 cut(s) | 243, 272 |
| MalI | GATC | 1 cut(s) | 124 |
| MboI | GATC | 1 cut(s) | 122 |
| MboII | GAAGA | 1 cut(s) | 128 |
| MflI | RGATCY | 1 cut(s) | 122 |
| MluCI | AATT | 3 cut(s) | 109, 180, 370 |
| MnlI | CCTC | 5 cut(s) | 271, 304, 314, 326, 364 |
| MseI | TTAA | 2 cut(s) | 18, 189 |
| MspR9I | CCNGG | 1 cut(s) | 296 |
| MvaI | CCWGG | 1 cut(s) | 296 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 239 |
| NdeII | GATC | 1 cut(s) | 122 |
| NlaIII | CATG | 1 cut(s) | 197 |
| NlaIV | GGNNCC | 1 cut(s) | 282 |
| PaeR7I | CTCGAG | 2 cut(s) | 330, 355 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 112 |
| PfoI | TCCNGGA | 1 cut(s) | 294 |
| PshBI | ATTAAT | 1 cut(s) | 189 |
| Psp6I | CCWGG | 1 cut(s) | 294 |
| PspGI | CCWGG | 1 cut(s) | 294 |
| PspN4I | GGNNCC | 1 cut(s) | 282 |
| PspXI | VCTCGAGB | 1 cut(s) | 330 |
| PsuI | RGATCY | 1 cut(s) | 122 |
| SaqAI | TTAA | 2 cut(s) | 18, 189 |
| Sau3AI | GATC | 1 cut(s) | 122 |
| ScrFI | CCNGG | 1 cut(s) | 296 |
| SetI | ASST | 5 cut(s) | 101, 235, 240, 286, 337 |
| Sfr274I | CTCGAG | 2 cut(s) | 330, 355 |
| SlaI | CTCGAG | 2 cut(s) | 330, 355 |
| SmlI | CTYRAG | 2 cut(s) | 330, 355 |
| SmoI | CTYRAG | 2 cut(s) | 330, 355 |
| Sse9I | AATT | 3 cut(s) | 109, 180, 370 |
| SspMI | CTAG | 2 cut(s) | 243, 272 |
| StyD4I | CCNGG | 1 cut(s) | 294 |
| StyI | CCWWGG | 1 cut(s) | 46 |
| TaqI | TCGA | 4 cut(s) | 144, 248, 331, 356 |
| TasI | AATT | 3 cut(s) | 109, 180, 370 |
| Tru1I | TTAA | 2 cut(s) | 18, 189 |
| Tru9I | TTAA | 2 cut(s) | 18, 189 |
| TscAI | CASTG | 1 cut(s) | 90 |
| TspRI | CASTG | 1 cut(s) | 90 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 112 |
| VspI | ATTAAT | 1 cut(s) | 189 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 308 |
| XapI | RAATTY | 2 cut(s) | 109, 370 |
| XhoI | CTCGAG | 2 cut(s) | 330, 355 |
| XspI | CTAG | 2 cut(s) | 243, 272 |