Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 113 |
| AciI | CCGC | 2 cut(s) | 108, 111 |
| AclWI | GGATC | 4 cut(s) | 99, 112, 168, 441 |
| AcoI | YGGCCR | 1 cut(s) | 754 |
| AcsI | RAATTY | 1 cut(s) | 589 |
| AflIII | ACRYGT | 1 cut(s) | 489 |
| AgsI | TTSAA | 2 cut(s) | 599, 683 |
| AjnI | CCWGG | 1 cut(s) | 329 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 201, 233 |
| AluBI | AGCT | 3 cut(s) | 467, 559, 602 |
| AluI | AGCT | 3 cut(s) | 467, 559, 602 |
| Alw26I | GTCTC | 5 cut(s) | 94, 227, 330, 459, 705 |
| AlwI | GGATC | 4 cut(s) | 99, 112, 168, 441 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 524 |
| AoxI | GGCC | 2 cut(s) | 754, 854 |
| ApeKI | GCWGC | 3 cut(s) | 650, 653, 656 |
| ApoI | RAATTY | 1 cut(s) | 589 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 546 |
| AsuHPI | GGTGA | 1 cut(s) | 181 |
| BalI | TGGCCA | 1 cut(s) | 756 |
| BamHI | GGATCC | 1 cut(s) | 104 |
| BauI | CACGAG | 1 cut(s) | 603 |
| BbvI | GCAGC | 3 cut(s) | 637, 640, 643 |
| BccI | CCATC | 6 cut(s) | 245, 245, 697, 710, 718, 781 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 599, 633 |
| BciT130I | CCWGG | 1 cut(s) | 331 |
| BciVI | GTATCC | 1 cut(s) | 470 |
| BcoDI | GTCTC | 5 cut(s) | 94, 227, 330, 459, 705 |
| BfuI | GTATCC | 1 cut(s) | 470 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 392 |
| BisI | GCNGC | 4 cut(s) | 111, 651, 654, 657 |
| BlsI | GCNGC | 4 cut(s) | 112, 652, 655, 658 |
| Bme1390I | CCNGG | 1 cut(s) | 331 |
| BmiI | GGNNCC | 2 cut(s) | 106, 310 |
| BmrFI | CCNGG | 1 cut(s) | 331 |
| BmrI | ACTGGG | 1 cut(s) | 361 |
| BmsI | GCATC | 4 cut(s) | 58, 291, 432, 668 |
| BmuI | ACTGGG | 1 cut(s) | 361 |
| BpmI | CTGGAG | 1 cut(s) | 361 |
| BpuEI | CTTGAG | 1 cut(s) | 440 |
| BsaBI | GATNNNNATC | 1 cut(s) | 255 |
| BsaI | GGTCTC | 1 cut(s) | 94 |
| BsaJI | CCNNGG | 3 cut(s) | 84, 330, 387 |
| BsaWI | WCCGGW | 1 cut(s) | 550 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 152, 182, 479, 509 |
| Bse1I | ACTGG | 2 cut(s) | 356, 529 |
| Bse8I | GATNNNNATC | 1 cut(s) | 255 |
| BseBI | CCWGG | 1 cut(s) | 331 |
| BseDI | CCNNGG | 3 cut(s) | 84, 330, 387 |
| BseGI | GGATG | 1 cut(s) | 729 |
| BseJI | GATNNNNATC | 1 cut(s) | 255 |
| BseMII | CTCAG | 2 cut(s) | 162, 251 |
| BseNI | ACTGG | 2 cut(s) | 356, 529 |
| BseRI | GAGGAG | 1 cut(s) | 82 |
| BseXI | GCAGC | 3 cut(s) | 637, 640, 643 |
| BseYI | CCCAGC | 1 cut(s) | 304 |
| BsgI | GTGCAG | 1 cut(s) | 386 |
| BshFI | GGCC | 2 cut(s) | 756, 856 |
| BsiSI | CCGG | 1 cut(s) | 551 |
| BsmAI | GTCTC | 5 cut(s) | 94, 227, 330, 459, 705 |
| BsmBI | CGTCTC | 2 cut(s) | 227, 705 |
| BsmI | GAATGC | 1 cut(s) | 648 |
| BsnI | GGCC | 2 cut(s) | 756, 856 |
| Bso31I | GGTCTC | 1 cut(s) | 94 |
| Bsp143I | GATC | 5 cut(s) | 77, 104, 173, 446, 801 |
| BspACI | CCGC | 2 cut(s) | 108, 111 |
| BspANI | GGCC | 2 cut(s) | 756, 856 |
| BspCNI | CTCAG | 2 cut(s) | 161, 252 |
| BspLI | GGNNCC | 2 cut(s) | 106, 310 |
| BspPI | GGATC | 4 cut(s) | 99, 112, 168, 441 |
| BspTNI | GGTCTC | 1 cut(s) | 94 |
| BsrBI | CCGCTC | 1 cut(s) | 113 |
| BsrI | ACTGG | 2 cut(s) | 356, 529 |
| BssECI | CCNNGG | 3 cut(s) | 84, 330, 387 |
| BssMI | GATC | 5 cut(s) | 77, 104, 173, 446, 801 |
| BssSI | CACGAG | 1 cut(s) | 603 |
| BssT1I | CCWWGG | 1 cut(s) | 84 |
| Bst2BI | CACGAG | 1 cut(s) | 603 |
| Bst2UI | CCWGG | 1 cut(s) | 331 |
| Bst4CI | ACNGT | 1 cut(s) | 158 |
| Bst6I | CTCTTC | 1 cut(s) | 21 |
| BstC8I | GCNNGC | 2 cut(s) | 73, 648 |
| BstDEI | CTNAG | 2 cut(s) | 148, 260 |
| BstF5I | GGATG | 1 cut(s) | 729 |
| BstKTI | GATC | 5 cut(s) | 80, 107, 176, 449, 804 |
| BstMAI | GTCTC | 5 cut(s) | 94, 227, 330, 459, 705 |
| BstMBI | GATC | 5 cut(s) | 77, 104, 173, 446, 801 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 392, 656 |
| BstNI | CCWGG | 1 cut(s) | 331 |
| BstNSI | RCATGY | 1 cut(s) | 493 |
| BstSCI | CCNGG | 1 cut(s) | 329 |
| BstV1I | GCAGC | 3 cut(s) | 637, 640, 643 |
| BstX2I | RGATCY | 1 cut(s) | 104 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 351 |
| BstYI | RGATCY | 1 cut(s) | 104 |
| BsuI | GTATCC | 1 cut(s) | 470 |
| BsuRI | GGCC | 2 cut(s) | 756, 856 |
| BtsCI | GGATG | 1 cut(s) | 729 |
| Cac8I | GCNNGC | 2 cut(s) | 73, 648 |
| CaiI | CAGNNNCTG | 1 cut(s) | 524 |
| CviAII | CATG | 3 cut(s) | 41, 490, 839 |
| DdeI | CTNAG | 2 cut(s) | 148, 260 |
| DpnI | GATC | 5 cut(s) | 79, 106, 175, 448, 803 |
| DpnII | GATC | 5 cut(s) | 77, 104, 173, 446, 801 |
| EaeI | YGGCCR | 1 cut(s) | 754 |
| Eam1104I | CTCTTC | 1 cut(s) | 21 |
| EarI | CTCTTC | 1 cut(s) | 21 |
| EciI | GGCGGA | 1 cut(s) | 97 |
| Eco130I | CCWWGG | 1 cut(s) | 84 |
| Eco31I | GGTCTC | 1 cut(s) | 94 |
| Eco32I | GATATC | 1 cut(s) | 633 |
| EcoRII | CCWGG | 1 cut(s) | 329 |
| EcoRV | GATATC | 1 cut(s) | 633 |
| EcoT14I | CCWWGG | 1 cut(s) | 84 |
| ErhI | CCWWGG | 1 cut(s) | 84 |
| Esp3I | CGTCTC | 2 cut(s) | 227, 705 |
| FaeI | CATG | 3 cut(s) | 44, 493, 842 |
| FatI | CATG | 3 cut(s) | 40, 489, 838 |
| Fnu4HI | GCNGC | 4 cut(s) | 111, 651, 654, 657 |
| FokI | GGATG | 1 cut(s) | 736 |
| Fsp4HI | GCNGC | 4 cut(s) | 111, 651, 654, 657 |
| GluI | GCNGC | 4 cut(s) | 111, 651, 654, 657 |
| GsaI | CCCAGC | 1 cut(s) | 308 |
| GsuI | CTGGAG | 1 cut(s) | 361 |
| HaeIII | GGCC | 2 cut(s) | 756, 856 |
| HapII | CCGG | 1 cut(s) | 551 |
| Hin1II | CATG | 3 cut(s) | 44, 493, 842 |
| HindIII | AAGCTT | 1 cut(s) | 557 |
| HinfI | GANTC | 3 cut(s) | 230, 806, 850 |
| HpaII | CCGG | 1 cut(s) | 551 |
| HphI | GGTGA | 1 cut(s) | 181 |
| Hpy166II | GTNNAC | 2 cut(s) | 320, 487 |
| Hpy188I | TCNGA | 4 cut(s) | 151, 261, 499, 702 |
| Hpy188III | TCNNGA | 3 cut(s) | 171, 378, 605 |
| Hpy8I | GTNNAC | 2 cut(s) | 320, 487 |
| Hpy99I | CGWCG | 1 cut(s) | 251 |
| HpyCH4III | ACNGT | 1 cut(s) | 158 |
| HpyCH4IV | ACGT | 1 cut(s) | 316 |
| HpyCH4V | TGCA | 5 cut(s) | 33, 269, 403, 620, 659 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 392, 656 |
| HpyF3I | CTNAG | 2 cut(s) | 148, 260 |
| HpySE526I | ACGT | 1 cut(s) | 316 |
| Hsp92II | CATG | 3 cut(s) | 44, 493, 842 |
| Kzo9I | GATC | 5 cut(s) | 77, 104, 173, 446, 801 |
| LmnI | GCTCC | 2 cut(s) | 133, 308 |
| Lsp1109I | GCAGC | 3 cut(s) | 637, 640, 643 |
| LweI | GCATC | 4 cut(s) | 58, 291, 432, 668 |
| MaeII | ACGT | 1 cut(s) | 316 |
| MaeIII | GTNAC | 3 cut(s) | 158, 187, 605 |
| MalI | GATC | 5 cut(s) | 79, 106, 175, 448, 803 |
| MbiI | CCGCTC | 1 cut(s) | 113 |
| MboI | GATC | 5 cut(s) | 77, 104, 173, 446, 801 |
| MboII | GAAGA | 4 cut(s) | 38, 232, 512, 623 |
| MflI | RGATCY | 1 cut(s) | 104 |
| MlsI | TGGCCA | 1 cut(s) | 756 |
| MluCI | AATT | 6 cut(s) | 278, 345, 511, 532, 589, 874 |
| MluNI | TGGCCA | 1 cut(s) | 756 |
| MmeI | TCCRAC | 1 cut(s) | 797 |
| MnlI | CCTC | 7 cut(s) | 67, 103, 157, 208, 254, 381, 382 |
| Mox20I | TGGCCA | 1 cut(s) | 756 |
| MroXI | GAANNNNTTC | 1 cut(s) | 546 |
| MscI | TGGCCA | 1 cut(s) | 756 |
| MseI | TTAA | 2 cut(s) | 567, 877 |
| Msp20I | TGGCCA | 1 cut(s) | 756 |
| MspI | CCGG | 1 cut(s) | 551 |
| MspR9I | CCNGG | 1 cut(s) | 331 |
| Mva1269I | GAATGC | 1 cut(s) | 648 |
| MvaI | CCWGG | 1 cut(s) | 331 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 392, 656 |
| NdeII | GATC | 5 cut(s) | 77, 104, 173, 446, 801 |
| NlaIII | CATG | 3 cut(s) | 44, 493, 842 |
| NlaIV | GGNNCC | 2 cut(s) | 106, 310 |
| NmeAIII | GCCGAG | 1 cut(s) | 412 |
| NmuCI | GTSAC | 3 cut(s) | 158, 187, 605 |
| NspI | RCATGY | 1 cut(s) | 493 |
| PciI | ACATGT | 1 cut(s) | 489 |
| PctI | GAATGC | 1 cut(s) | 648 |
| PdmI | GAANNNNTTC | 1 cut(s) | 546 |
| PfeI | GAWTC | 3 cut(s) | 230, 806, 850 |
| PkrI | GCNGC | 4 cut(s) | 112, 652, 655, 658 |
| PscI | ACATGT | 1 cut(s) | 489 |
| Psp6I | CCWGG | 1 cut(s) | 329 |
| PspFI | CCCAGC | 1 cut(s) | 304 |
| PspGI | CCWGG | 1 cut(s) | 329 |
| PspN4I | GGNNCC | 2 cut(s) | 106, 310 |
| PstNI | CAGNNNCTG | 1 cut(s) | 524 |
| PsuI | RGATCY | 1 cut(s) | 104 |
| SaqAI | TTAA | 2 cut(s) | 567, 877 |
| SatI | GCNGC | 4 cut(s) | 111, 651, 654, 657 |
| Sau3AI | GATC | 5 cut(s) | 77, 104, 173, 446, 801 |
| ScrFI | CCNGG | 1 cut(s) | 331 |
| SetI | ASST | 7 cut(s) | 59, 194, 319, 393, 469, 561, 604 |
| SfaNI | GCATC | 4 cut(s) | 58, 291, 432, 668 |
| SmlI | CTYRAG | 1 cut(s) | 419 |
| SmoI | CTYRAG | 1 cut(s) | 419 |
| Sse9I | AATT | 6 cut(s) | 278, 345, 511, 532, 589, 874 |
| SsiI | CCGC | 2 cut(s) | 108, 111 |
| StyD4I | CCNGG | 1 cut(s) | 329 |
| StyI | CCWWGG | 1 cut(s) | 84 |
| TaaI | ACNGT | 1 cut(s) | 158 |
| TaiI | ACGT | 1 cut(s) | 319 |
| TaqI | TCGA | 2 cut(s) | 246, 804 |
| TasI | AATT | 6 cut(s) | 278, 345, 511, 532, 589, 874 |
| TauI | GCSGC | 1 cut(s) | 113 |
| TfiI | GAWTC | 3 cut(s) | 230, 806, 850 |
| Tru1I | TTAA | 2 cut(s) | 567, 877 |
| Tru9I | TTAA | 2 cut(s) | 567, 877 |
| TseFI | GTSAC | 3 cut(s) | 158, 187, 605 |
| TseI | GCWGC | 3 cut(s) | 650, 653, 656 |
| Tsp45I | GTSAC | 3 cut(s) | 158, 187, 605 |
| TspDTI | ATGAA | 3 cut(s) | 555, 600, 683 |
| TspGWI | ACGGA | 2 cut(s) | 166, 209 |
| XapI | RAATTY | 1 cut(s) | 589 |
| XceI | RCATGY | 1 cut(s) | 493 |
| XmnI | GAANNNNTTC | 1 cut(s) | 546 |