Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRRNT_2 | PF08263 | 2 - 39 | 5.7e-12 | Leucine rich repeat N-terminal domain |
| LRR_14 | PF23598 | 80 - 165 | 2.3e-10 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 136 - 193 | 5e-08 | Leucine rich repeat |
| LRR_14 | PF23598 | 156 - 240 | 7.6e-13 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 203 - 244 | 2.2e-06 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 674 |
| AclWI | GGATC | 3 cut(s) | 44, 504, 651 |
| AcsI | RAATTY | 4 cut(s) | 394, 522, 541, 669 |
| AcuI | CTGAAG | 1 cut(s) | 16 |
| AfeI | AGCGCT | 1 cut(s) | 21 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 683 |
| AflII | CTTAAG | 2 cut(s) | 323, 700 |
| AgsI | TTSAA | 2 cut(s) | 409, 556 |
| AluBI | AGCT | 5 cut(s) | 30, 301, 475, 622, 705 |
| AluI | AGCT | 5 cut(s) | 30, 301, 475, 622, 705 |
| Alw26I | GTCTC | 2 cut(s) | 7, 222 |
| AlwI | GGATC | 3 cut(s) | 44, 504, 651 |
| Aor51HI | AGCGCT | 1 cut(s) | 21 |
| ApoI | RAATTY | 4 cut(s) | 394, 522, 541, 669 |
| AspLEI | GCGC | 1 cut(s) | 22 |
| AspS9I | GGNCC | 1 cut(s) | 145 |
| AsuHPI | GGTGA | 1 cut(s) | 242 |
| AvaII | GGWCC | 1 cut(s) | 145 |
| BcoDI | GTCTC | 2 cut(s) | 7, 222 |
| BfaI | CTAG | 2 cut(s) | 275, 710 |
| BfoI | RGCGCY | 1 cut(s) | 23 |
| BfrI | CTTAAG | 2 cut(s) | 323, 700 |
| BlpI | GCTNAGC | 1 cut(s) | 251 |
| Bme18I | GGWCC | 1 cut(s) | 145 |
| BmgT120I | GGNCC | 1 cut(s) | 145 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 251 |
| BpuEI | CTTGAG | 1 cut(s) | 244 |
| BsaI | GGTCTC | 1 cut(s) | 222 |
| BsaWI | WCCGGW | 1 cut(s) | 56 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 683 |
| Bse1I | ACTGG | 1 cut(s) | 130 |
| Bse3DI | GCAATG | 1 cut(s) | 245 |
| BseGI | GGATG | 1 cut(s) | 202 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 683 |
| BseMI | GCAATG | 1 cut(s) | 245 |
| BseMII | CTCAG | 5 cut(s) | 40, 163, 473, 620, 707 |
| BseNI | ACTGG | 1 cut(s) | 130 |
| BseRI | GAGGAG | 3 cut(s) | 20, 23, 194 |
| BsiSI | CCGG | 1 cut(s) | 57 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 683 |
| BsmAI | GTCTC | 2 cut(s) | 7, 222 |
| Bso31I | GGTCTC | 1 cut(s) | 222 |
| Bsp143I | GATC | 4 cut(s) | 40, 49, 496, 643 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 251 |
| BspACI | CCGC | 1 cut(s) | 674 |
| BspCNI | CTCAG | 5 cut(s) | 39, 162, 472, 619, 708 |
| BspPI | GGATC | 3 cut(s) | 44, 504, 651 |
| BspTI | CTTAAG | 2 cut(s) | 323, 700 |
| BspTNI | GGTCTC | 1 cut(s) | 222 |
| BsrDI | GCAATG | 1 cut(s) | 245 |
| BsrI | ACTGG | 1 cut(s) | 130 |
| BssMI | GATC | 4 cut(s) | 40, 49, 496, 643 |
| Bst4CI | ACNGT | 3 cut(s) | 192, 511, 658 |
| BstAFI | CTTAAG | 2 cut(s) | 323, 700 |
| BstDEI | CTNAG | 7 cut(s) | 26, 149, 251, 281, 459, 606, 716 |
| BstEII | GGTNACC | 1 cut(s) | 686 |
| BstF5I | GGATG | 1 cut(s) | 202 |
| BstH2I | RGCGCY | 1 cut(s) | 23 |
| BstHHI | GCGC | 1 cut(s) | 22 |
| BstKTI | GATC | 4 cut(s) | 43, 52, 499, 646 |
| BstMAI | GTCTC | 2 cut(s) | 7, 222 |
| BstMBI | GATC | 4 cut(s) | 40, 49, 496, 643 |
| BstPI | GGTNACC | 1 cut(s) | 686 |
| BstX2I | RGATCY | 3 cut(s) | 49, 496, 643 |
| BstYI | RGATCY | 3 cut(s) | 49, 496, 643 |
| BtsCI | GGATG | 1 cut(s) | 202 |
| BtsIMutI | CAGTG | 3 cut(s) | 123, 507, 654 |
| CfoI | GCGC | 1 cut(s) | 22 |
| Cfr13I | GGNCC | 1 cut(s) | 145 |
| CviAII | CATG | 2 cut(s) | 111, 131 |
| CviJI | RGCY | 8 cut(s) | 30, 64, 206, 255, 301, 475, 622, 705 |
| CviKI_1 | RGCY | 8 cut(s) | 30, 64, 206, 255, 301, 475, 622, 705 |
| DdeI | CTNAG | 7 cut(s) | 26, 149, 251, 281, 459, 606, 716 |
| DpnI | GATC | 4 cut(s) | 42, 51, 498, 645 |
| DpnII | GATC | 4 cut(s) | 40, 49, 496, 643 |
| DraI | TTTAAA | 1 cut(s) | 267 |
| EciI | GGCGGA | 1 cut(s) | 663 |
| Eco31I | GGTCTC | 1 cut(s) | 222 |
| Eco47I | GGWCC | 1 cut(s) | 145 |
| Eco47III | AGCGCT | 1 cut(s) | 21 |
| Eco57I | CTGAAG | 1 cut(s) | 16 |
| Eco91I | GGTNACC | 1 cut(s) | 686 |
| EcoO65I | GGTNACC | 1 cut(s) | 686 |
| FaeI | CATG | 2 cut(s) | 114, 134 |
| FaiI | YATR | 8 cut(s) | 112, 132, 160, 177, 314, 364, 366, 429 |
| FatI | CATG | 2 cut(s) | 110, 130 |
| FauNDI | CATATG | 1 cut(s) | 364 |
| FokI | GGATG | 1 cut(s) | 209 |
| FspBI | CTAG | 2 cut(s) | 275, 710 |
| GlaI | GCGC | 1 cut(s) | 21 |
| HaeII | RGCGCY | 1 cut(s) | 23 |
| HapII | CCGG | 1 cut(s) | 57 |
| HhaI | GCGC | 1 cut(s) | 22 |
| Hin1II | CATG | 2 cut(s) | 114, 134 |
| Hin6I | GCGC | 1 cut(s) | 20 |
| HinP1I | GCGC | 1 cut(s) | 20 |
| HincII | GTYRAC | 1 cut(s) | 320 |
| HindII | GTYRAC | 1 cut(s) | 320 |
| HinfI | GANTC | 4 cut(s) | 383, 448, 530, 595 |
| HpaII | CCGG | 1 cut(s) | 57 |
| HphI | GGTGA | 1 cut(s) | 242 |
| Hpy166II | GTNNAC | 1 cut(s) | 320 |
| Hpy188I | TCNGA | 3 cut(s) | 35, 442, 652 |
| Hpy188III | TCNNGA | 6 cut(s) | 223, 380, 406, 527, 553, 710 |
| Hpy8I | GTNNAC | 1 cut(s) | 320 |
| HpyAV | CCTTC | 3 cut(s) | 63, 207, 252 |
| HpyCH4III | ACNGT | 3 cut(s) | 192, 511, 658 |
| HpyCH4V | TGCA | 6 cut(s) | 47, 114, 353, 487, 634, 726 |
| HpyF3I | CTNAG | 7 cut(s) | 26, 149, 251, 281, 459, 606, 716 |
| Hsp92II | CATG | 2 cut(s) | 114, 134 |
| HspAI | GCGC | 1 cut(s) | 20 |
| Kzo9I | GATC | 4 cut(s) | 40, 49, 496, 643 |
| LpnPI | CCDG | 8 cut(s) | 70, 111, 269, 393, 540, 600, 704, 728 |
| MaeI | CTAG | 2 cut(s) | 275, 710 |
| MaeIII | GTNAC | 3 cut(s) | 80, 152, 686 |
| MalI | GATC | 4 cut(s) | 42, 51, 498, 645 |
| MboI | GATC | 4 cut(s) | 40, 49, 496, 643 |
| MflI | RGATCY | 3 cut(s) | 49, 496, 643 |
| MlyI | GAGTC | 2 cut(s) | 392, 539 |
| MmeI | TCCRAC | 2 cut(s) | 266, 675 |
| MnlI | CCTC | 9 cut(s) | 131, 158, 172, 193, 219, 327, 468, 615, 687 |
| MseI | TTAA | 5 cut(s) | 266, 324, 477, 624, 701 |
| MspCI | CTTAAG | 2 cut(s) | 323, 700 |
| MspI | CCGG | 1 cut(s) | 57 |
| NdeI | CATATG | 1 cut(s) | 364 |
| NdeII | GATC | 4 cut(s) | 40, 49, 496, 643 |
| NlaIII | CATG | 2 cut(s) | 114, 134 |
| PfeI | GAWTC | 2 cut(s) | 448, 595 |
| PleI | GAGTC | 2 cut(s) | 391, 538 |
| PpsI | GAGTC | 2 cut(s) | 391, 538 |
| PspEI | GGTNACC | 1 cut(s) | 686 |
| PspPI | GGNCC | 1 cut(s) | 145 |
| PsuI | RGATCY | 3 cut(s) | 49, 496, 643 |
| SaqAI | TTAA | 5 cut(s) | 266, 324, 477, 624, 701 |
| Sau3AI | GATC | 4 cut(s) | 40, 49, 496, 643 |
| Sau96I | GGNCC | 1 cut(s) | 145 |
| SchI | GAGTC | 2 cut(s) | 392, 539 |
| SinI | GGWCC | 1 cut(s) | 145 |
| SmiI | ATTTAAAT | 1 cut(s) | 267 |
| SmlI | CTYRAG | 3 cut(s) | 223, 323, 700 |
| SmoI | CTYRAG | 3 cut(s) | 223, 323, 700 |
| SsiI | CCGC | 1 cut(s) | 674 |
| SspMI | CTAG | 2 cut(s) | 275, 710 |
| SwaI | ATTTAAAT | 1 cut(s) | 267 |
| TaaI | ACNGT | 3 cut(s) | 192, 511, 658 |
| TfiI | GAWTC | 2 cut(s) | 448, 595 |
| Tru1I | TTAA | 5 cut(s) | 266, 324, 477, 624, 701 |
| Tru9I | TTAA | 5 cut(s) | 266, 324, 477, 624, 701 |
| TscAI | CASTG | 3 cut(s) | 130, 514, 661 |
| TspDTI | ATGAA | 4 cut(s) | 99, 234, 301, 348 |
| TspRI | CASTG | 3 cut(s) | 130, 514, 661 |
| Vha464I | CTTAAG | 2 cut(s) | 323, 700 |
| VpaK11BI | GGWCC | 1 cut(s) | 145 |
| XapI | RAATTY | 4 cut(s) | 394, 522, 541, 669 |
| XbaI | TCTAGA | 1 cut(s) | 709 |
| XspI | CTAG | 2 cut(s) | 275, 710 |