ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1281, 2259 |
| Acc36I | ACCTGC | 1 cut(s) | 224 |
| Acc65I | GGTACC | 1 cut(s) | 689 |
| AccB1I | GGYRCC | 1 cut(s) | 689 |
| AccI | GTMKAC | 2 cut(s) | 533, 634 |
| AccII | CGCG | 1 cut(s) | 1077 |
| AciI | CCGC | 5 cut(s) | 790, 950, 1075, 1077, 1532 |
| AclWI | GGATC | 1 cut(s) | 1324 |
| AcsI | RAATTY | 4 cut(s) | 433, 512, 1777, 2242 |
| AcuI | CTGAAG | 1 cut(s) | 1518 |
| AfaI | GTAC | 7 cut(s) | 156, 214, 339, 691, 1878, 1885, 2314 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 543, 2225 |
| AflII | CTTAAG | 3 cut(s) | 1292, 2009, 2204 |
| AflIII | ACRYGT | 1 cut(s) | 1410 |
| AgsI | TTSAA | 8 cut(s) | 48, 298, 310, 410, 915, 977, 1154, 2354 |
| AjiI | CACGTC | 1 cut(s) | 1942 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2015, 2047 |
| AluBI | AGCT | 8 cut(s) | 1231, 1285, 1484, 1784, 2017, 2102, 2135, 2173 |
| AluI | AGCT | 8 cut(s) | 1231, 1285, 1484, 1784, 2017, 2102, 2135, 2173 |
| Alw21I | GWGCWC | 2 cut(s) | 526, 1018 |
| Alw26I | GTCTC | 6 cut(s) | 434, 569, 650, 1229, 1246, 1735 |
| Alw44I | GTGCAC | 1 cut(s) | 1014 |
| AlwI | GGATC | 1 cut(s) | 1324 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1974 |
| AoxI | GGCC | 2 cut(s) | 699, 2379 |
| ApaLI | GTGCAC | 1 cut(s) | 1014 |
| ApeKI | GCWGC | 7 cut(s) | 583, 968, 1183, 1228, 1974, 2135, 2279 |
| ApoI | RAATTY | 4 cut(s) | 433, 512, 1777, 2242 |
| AseI | ATTAAT | 1 cut(s) | 1191 |
| Asp718I | GGTACC | 1 cut(s) | 689 |
| AspLEI | GCGC | 1 cut(s) | 464 |
| AspS9I | GGNCC | 2 cut(s) | 164, 1079 |
| AsuC2I | CCSGG | 3 cut(s) | 168, 544, 1454 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 637, 910 |
| AsuII | TTCGAA | 2 cut(s) | 1390, 2168 |
| AvaII | GGWCC | 2 cut(s) | 164, 1079 |
| BaeGI | GKGCMC | 1 cut(s) | 1018 |
| BanI | GGYRCC | 1 cut(s) | 689 |
| BanII | GRGCYC | 3 cut(s) | 90, 846, 2270 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1123, 1155 |
| BbsI | GAAGAC | 1 cut(s) | 1624 |
| Bbv12I | GWGCWC | 2 cut(s) | 526, 1018 |
| BbvI | GCAGC | 7 cut(s) | 595, 955, 1195, 1240, 1961, 2122, 2266 |
| BccI | CCATC | 7 cut(s) | 613, 691, 851, 1079, 1607, 1939, 2243 |
| BceAI | ACGGC | 2 cut(s) | 489, 1902 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1543, 1577 |
| BciVI | GTATCC | 1 cut(s) | 1071 |
| BclI | TGATCA | 1 cut(s) | 1993 |
| BcnI | CCSGG | 3 cut(s) | 168, 544, 1454 |
| BcoDI | GTCTC | 6 cut(s) | 434, 569, 650, 1229, 1246, 1735 |
| BfaI | CTAG | 8 cut(s) | 32, 504, 561, 638, 2082, 2112, 2192, 2307 |
| BfmI | CTRYAG | 1 cut(s) | 1562 |
| BfrI | CTTAAG | 3 cut(s) | 1292, 2009, 2204 |
| BfuAI | ACCTGC | 1 cut(s) | 224 |
| BfuI | GTATCC | 1 cut(s) | 1071 |
| BisI | GCNGC | 7 cut(s) | 584, 969, 1184, 1229, 1975, 2136, 2280 |
| BlsI | GCNGC | 7 cut(s) | 585, 970, 1185, 1230, 1976, 2137, 2281 |
| Bme1390I | CCNGG | 3 cut(s) | 168, 544, 1454 |
| Bme18I | GGWCC | 2 cut(s) | 164, 1079 |
| BmgBI | CACGTC | 1 cut(s) | 1942 |
| BmgT120I | GGNCC | 2 cut(s) | 164, 1079 |
| BmiI | GGNNCC | 3 cut(s) | 174, 691, 1719 |
| BmrFI | CCNGG | 3 cut(s) | 168, 544, 1454 |
| BmrI | ACTGGG | 1 cut(s) | 1126 |
| BmsI | GCATC | 5 cut(s) | 361, 931, 1501, 1715, 2293 |
| BmuI | ACTGGG | 1 cut(s) | 1126 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1356 |
| BpiI | GAAGAC | 1 cut(s) | 1624 |
| BpmI | CTGGAG | 1 cut(s) | 1908 |
| Bpu10I | CCTNAGC | 3 cut(s) | 753, 1785, 2269 |
| Bpu14I | TTCGAA | 2 cut(s) | 1390, 2168 |
| BpuEI | CTTGAG | 3 cut(s) | 708, 1253, 1270 |
| BpuMI | CCSGG | 3 cut(s) | 168, 544, 1454 |
| BsaBI | GATNNNNATC | 1 cut(s) | 999 |
| BsaJI | CCNNGG | 3 cut(s) | 167, 275, 1075 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 770, 800, 1026, 1056 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 543, 2225 |
| Bse1I | ACTGG | 3 cut(s) | 1121, 1340, 1891 |
| Bse3DI | GCAATG | 1 cut(s) | 1276 |
| Bse8I | GATNNNNATC | 1 cut(s) | 999 |
| BseDI | CCNNGG | 3 cut(s) | 167, 275, 1075 |
| BseGI | GGATG | 3 cut(s) | 1516, 1599, 1900 |
| BseJI | GATNNNNATC | 1 cut(s) | 999 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 543, 2225 |
| BseMI | GCAATG | 1 cut(s) | 1276 |
| BseMII | CTCAG | 4 cut(s) | 440, 1017, 1134, 2283 |
| BseNI | ACTGG | 3 cut(s) | 1121, 1340, 1891 |
| BseRI | GAGGAG | 3 cut(s) | 643, 1043, 1755 |
| BseSI | GKGCMC | 1 cut(s) | 1018 |
| BseXI | GCAGC | 7 cut(s) | 595, 955, 1195, 1240, 1961, 2122, 2266 |
| Bsh1236I | CGCG | 1 cut(s) | 1077 |
| BshFI | GGCC | 2 cut(s) | 701, 2381 |
| BshNI | GGYRCC | 1 cut(s) | 689 |
| BsiHKAI | GWGCWC | 2 cut(s) | 526, 1018 |
| BsiSI | CCGG | 3 cut(s) | 167, 544, 1454 |
| BslFI | GGGAC | 8 cut(s) | 263, 658, 791, 1259, 1361, 1952, 2167, 2201 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 543, 2225 |
| BsmAI | GTCTC | 6 cut(s) | 434, 569, 650, 1229, 1246, 1735 |
| BsmFI | GGGAC | 8 cut(s) | 263, 658, 791, 1259, 1361, 1952, 2167, 2201 |
| BsmI | GAATGC | 4 cut(s) | 1095, 1768, 1954, 2083 |
| BsnI | GGCC | 2 cut(s) | 701, 2381 |
| Bsp119I | TTCGAA | 2 cut(s) | 1390, 2168 |
| Bsp1286I | GDGCHC | 5 cut(s) | 90, 526, 846, 1018, 2270 |
| Bsp143I | GATC | 6 cut(s) | 158, 243, 388, 1172, 1329, 1993 |
| BspACI | CCGC | 5 cut(s) | 790, 950, 1075, 1077, 1532 |
| BspANI | GGCC | 2 cut(s) | 701, 2381 |
| BspCNI | CTCAG | 4 cut(s) | 441, 1018, 1135, 2282 |
| BspFNI | CGCG | 1 cut(s) | 1077 |
| BspLI | GGNNCC | 3 cut(s) | 174, 691, 1719 |
| BspMAI | CTGCAG | 1 cut(s) | 1566 |
| BspMI | ACCTGC | 1 cut(s) | 224 |
| BspPI | GGATC | 1 cut(s) | 1324 |
| BspT104I | TTCGAA | 2 cut(s) | 1390, 2168 |
| BspT107I | GGYRCC | 1 cut(s) | 689 |
| BspTI | CTTAAG | 3 cut(s) | 1292, 2009, 2204 |
| BsrDI | GCAATG | 1 cut(s) | 1276 |
| BsrI | ACTGG | 3 cut(s) | 1121, 1340, 1891 |
| BssECI | CCNNGG | 3 cut(s) | 167, 275, 1075 |
| BssMI | GATC | 6 cut(s) | 158, 243, 388, 1172, 1329, 1993 |
| BssNAI | GTATAC | 1 cut(s) | 534 |
| BssT1I | CCWWGG | 1 cut(s) | 275 |
| Bst1107I | GTATAC | 1 cut(s) | 534 |
| Bst4CI | ACNGT | 3 cut(s) | 1008, 1669, 1970 |
| Bst6I | CTCTTC | 1 cut(s) | 1126 |
| BstAFI | CTTAAG | 3 cut(s) | 1292, 2009, 2204 |
| BstBI | TTCGAA | 2 cut(s) | 1390, 2168 |
| BstC8I | GCNNGC | 2 cut(s) | 221, 1422 |
| BstDEI | CTNAG | 6 cut(s) | 449, 753, 1026, 1143, 1785, 2269 |
| BstDSI | CCRYGG | 1 cut(s) | 1075 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2223 |
| BstF5I | GGATG | 3 cut(s) | 1516, 1599, 1900 |
| BstFNI | CGCG | 1 cut(s) | 1077 |
| BstHHI | GCGC | 1 cut(s) | 464 |
| BstKTI | GATC | 6 cut(s) | 161, 246, 391, 1175, 1332, 1996 |
| BstMAI | GTCTC | 6 cut(s) | 434, 569, 650, 1229, 1246, 1735 |
| BstMBI | GATC | 6 cut(s) | 158, 243, 388, 1172, 1329, 1993 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 941, 1430, 2366 |
| BstNSI | RCATGY | 2 cut(s) | 1414, 2369 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1356 |
| BstSCI | CCNGG | 3 cut(s) | 166, 542, 1452 |
| BstSFI | CTRYAG | 1 cut(s) | 1562 |
| BstSLI | GKGCMC | 1 cut(s) | 1018 |
| BstUI | CGCG | 1 cut(s) | 1077 |
| BstV1I | GCAGC | 7 cut(s) | 595, 955, 1195, 1240, 1961, 2122, 2266 |
| BstV2I | GAAGAC | 1 cut(s) | 1624 |
| BstX2I | RGATCY | 1 cut(s) | 1329 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1606, 2229 |
| BstYI | RGATCY | 1 cut(s) | 1329 |
| BstZ17I | GTATAC | 1 cut(s) | 534 |
| BsuI | GTATCC | 1 cut(s) | 1071 |
| BsuRI | GGCC | 2 cut(s) | 701, 2381 |
| BtgI | CCRYGG | 1 cut(s) | 1075 |
| BtrI | CACGTC | 1 cut(s) | 1942 |
| BtsCI | GGATG | 3 cut(s) | 1516, 1599, 1900 |
| BtsI | GCAGTG | 3 cut(s) | 17, 322, 2334 |
| BtsIMutI | CAGTG | 6 cut(s) | 17, 322, 1023, 1333, 1975, 2334 |
| BveI | ACCTGC | 1 cut(s) | 224 |
| Cac8I | GCNNGC | 2 cut(s) | 221, 1422 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1974 |
| CfoI | GCGC | 1 cut(s) | 464 |
| Cfr13I | GGNCC | 2 cut(s) | 164, 1079 |
| Cfr42I | CCGCGG | 1 cut(s) | 1078 |
| CseI | GACGC | 1 cut(s) | 338 |
| Csp6I | GTAC | 7 cut(s) | 155, 213, 338, 690, 1877, 1884, 2313 |
| CviQI | GTAC | 7 cut(s) | 155, 213, 338, 690, 1877, 1884, 2313 |
| DdeI | CTNAG | 6 cut(s) | 449, 753, 1026, 1143, 1785, 2269 |
| DpnI | GATC | 6 cut(s) | 160, 245, 390, 1174, 1331, 1995 |
| DpnII | GATC | 6 cut(s) | 158, 243, 388, 1172, 1329, 1993 |
| Eam1104I | CTCTTC | 1 cut(s) | 1126 |
| EarI | CTCTTC | 1 cut(s) | 1126 |
| Eco130I | CCWWGG | 1 cut(s) | 275 |
| Eco24I | GRGCYC | 3 cut(s) | 90, 846, 2270 |
| Eco47I | GGWCC | 2 cut(s) | 164, 1079 |
| Eco57I | CTGAAG | 1 cut(s) | 1518 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2223 |
| EcoRI | GAATTC | 2 cut(s) | 433, 512 |
| EcoT14I | CCWWGG | 1 cut(s) | 275 |
| EcoT38I | GRGCYC | 3 cut(s) | 90, 846, 2270 |
| ErhI | CCWWGG | 1 cut(s) | 275 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 677, 709 |
| FaqI | GGGAC | 8 cut(s) | 263, 658, 791, 1259, 1361, 1952, 2167, 2201 |
| FauI | CCCGC | 2 cut(s) | 797, 1082 |
| FbaI | TGATCA | 1 cut(s) | 1993 |
| FblI | GTMKAC | 2 cut(s) | 533, 634 |
| Fnu4HI | GCNGC | 7 cut(s) | 584, 969, 1184, 1229, 1975, 2136, 2280 |
| FokI | GGATG | 3 cut(s) | 1523, 1586, 1907 |
| FriOI | GRGCYC | 3 cut(s) | 90, 846, 2270 |
| Fsp4HI | GCNGC | 7 cut(s) | 584, 969, 1184, 1229, 1975, 2136, 2280 |
| FspBI | CTAG | 8 cut(s) | 32, 504, 561, 638, 2082, 2112, 2192, 2307 |
| GlaI | GCGC | 1 cut(s) | 463 |
| GluI | GCNGC | 7 cut(s) | 584, 969, 1184, 1229, 1975, 2136, 2280 |
| GsuI | CTGGAG | 1 cut(s) | 1908 |
| HaeIII | GGCC | 2 cut(s) | 701, 2381 |
| HapII | CCGG | 3 cut(s) | 167, 544, 1454 |
| HgaI | GACGC | 1 cut(s) | 338 |
| HhaI | GCGC | 1 cut(s) | 464 |
| Hin6I | GCGC | 1 cut(s) | 462 |
| HinP1I | GCGC | 1 cut(s) | 462 |
| HincII | GTYRAC | 1 cut(s) | 469 |
| HindII | GTYRAC | 1 cut(s) | 469 |
| HindIII | AAGCTT | 1 cut(s) | 2015 |
| HpaII | CCGG | 3 cut(s) | 167, 544, 1454 |
| HphI | GGTGA | 3 cut(s) | 128, 637, 910 |
| Hpy166II | GTNNAC | 7 cut(s) | 469, 534, 635, 924, 1016, 1665, 1877 |
| Hpy188I | TCNGA | 5 cut(s) | 439, 599, 856, 1318, 1402 |
| Hpy8I | GTNNAC | 7 cut(s) | 469, 534, 635, 924, 1016, 1665, 1877 |
| Hpy99I | CGWCG | 1 cut(s) | 133 |
| HpyAV | CCTTC | 6 cut(s) | 59, 679, 886, 1501, 1533, 2062 |
| HpyCH4III | ACNGT | 3 cut(s) | 1008, 1669, 1970 |
| HpyCH4IV | ACGT | 3 cut(s) | 340, 748, 1941 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 941, 1430, 2366 |
| HpyF3I | CTNAG | 6 cut(s) | 449, 753, 1026, 1143, 1785, 2269 |
| HpySE526I | ACGT | 3 cut(s) | 340, 748, 1941 |
| HspAI | GCGC | 1 cut(s) | 462 |
| KpnI | GGTACC | 1 cut(s) | 693 |
| Ksp22I | TGATCA | 1 cut(s) | 1993 |
| KspI | CCGCGG | 1 cut(s) | 1078 |
| Kzo9I | GATC | 6 cut(s) | 158, 243, 388, 1172, 1329, 1993 |
| LmnI | GCTCC | 2 cut(s) | 521, 1723 |
| Lsp1109I | GCAGC | 7 cut(s) | 595, 955, 1195, 1240, 1961, 2122, 2266 |
| LweI | GCATC | 5 cut(s) | 361, 931, 1501, 1715, 2293 |
| MaeI | CTAG | 8 cut(s) | 32, 504, 561, 638, 2082, 2112, 2192, 2307 |
| MaeII | ACGT | 3 cut(s) | 340, 748, 1941 |
| MaeIII | GTNAC | 3 cut(s) | 757, 985, 1138 |
| MalI | GATC | 6 cut(s) | 160, 245, 390, 1174, 1331, 1995 |
| MboI | GATC | 6 cut(s) | 158, 243, 388, 1172, 1329, 1993 |
| MfeI | CAATTG | 1 cut(s) | 2039 |
| MflI | RGATCY | 1 cut(s) | 1329 |
| MhlI | GDGCHC | 5 cut(s) | 90, 526, 846, 1018, 2270 |
| MlyI | GAGTC | 5 cut(s) | 436, 652, 680, 1130, 1565 |
| MmeI | TCCRAC | 5 cut(s) | 161, 1088, 1132, 1473, 1839 |
| MseI | TTAA | 7 cut(s) | 12, 326, 1191, 1293, 1791, 2010, 2205 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1204, 1415 |
| MspA1I | CMGCKG | 2 cut(s) | 1077, 2135 |
| MspCI | CTTAAG | 3 cut(s) | 1292, 2009, 2204 |
| MspI | CCGG | 3 cut(s) | 167, 544, 1454 |
| MspR9I | CCNGG | 3 cut(s) | 168, 544, 1454 |
| MunI | CAATTG | 1 cut(s) | 2039 |
| Mva1269I | GAATGC | 4 cut(s) | 1095, 1768, 1954, 2083 |
| MvnI | CGCG | 1 cut(s) | 1077 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 941, 1430, 2366 |
| NciI | CCSGG | 3 cut(s) | 168, 544, 1454 |
| NdeII | GATC | 6 cut(s) | 158, 243, 388, 1172, 1329, 1993 |
| NlaIV | GGNNCC | 3 cut(s) | 174, 691, 1719 |
| NmeAIII | GCCGAG | 1 cut(s) | 1553 |
| NspI | RCATGY | 2 cut(s) | 1414, 2369 |
| NspV | TTCGAA | 2 cut(s) | 1390, 2168 |
| PciI | ACATGT | 1 cut(s) | 1410 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 346 |
| PctI | GAATGC | 4 cut(s) | 1095, 1768, 1954, 2083 |
| PfeI | GAWTC | 9 cut(s) | 112, 266, 851, 1000, 1213, 1457, 1519, 1862, 2188 |
| PkrI | GCNGC | 7 cut(s) | 585, 970, 1185, 1230, 1976, 2137, 2281 |
| PleI | GAGTC | 5 cut(s) | 436, 652, 679, 1129, 1565 |
| PpsI | GAGTC | 5 cut(s) | 436, 652, 679, 1129, 1565 |
| PscI | ACATGT | 1 cut(s) | 1410 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1356 |
| PshBI | ATTAAT | 1 cut(s) | 1191 |
| PsiI | TTATAA | 2 cut(s) | 1281, 2259 |
| PspN4I | GGNNCC | 3 cut(s) | 174, 691, 1719 |
| PspPI | GGNCC | 2 cut(s) | 164, 1079 |
| PstI | CTGCAG | 1 cut(s) | 1566 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1974 |
| PsuI | RGATCY | 1 cut(s) | 1329 |
| PvuII | CAGCTG | 1 cut(s) | 2135 |
| RsaI | GTAC | 7 cut(s) | 156, 214, 339, 691, 1878, 1885, 2314 |
| RsaNI | GTAC | 7 cut(s) | 155, 213, 338, 690, 1877, 1884, 2313 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1204, 1415 |
| SacII | CCGCGG | 1 cut(s) | 1078 |
| SaqAI | TTAA | 7 cut(s) | 12, 326, 1191, 1293, 1791, 2010, 2205 |
| SatI | GCNGC | 7 cut(s) | 584, 969, 1184, 1229, 1975, 2136, 2280 |
| Sau3AI | GATC | 6 cut(s) | 158, 243, 388, 1172, 1329, 1993 |
| Sau96I | GGNCC | 2 cut(s) | 164, 1079 |
| SchI | GAGTC | 5 cut(s) | 436, 652, 680, 1130, 1565 |
| ScrFI | CCNGG | 3 cut(s) | 168, 544, 1454 |
| SduI | GDGCHC | 5 cut(s) | 90, 526, 846, 1018, 2270 |
| SfaNI | GCATC | 5 cut(s) | 361, 931, 1501, 1715, 2293 |
| SfcI | CTRYAG | 1 cut(s) | 1562 |
| Sfr303I | CCGCGG | 1 cut(s) | 1078 |
| SfuI | TTCGAA | 2 cut(s) | 1390, 2168 |
| SgrBI | CCGCGG | 1 cut(s) | 1078 |
| SinI | GGWCC | 2 cut(s) | 164, 1079 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1204, 1415 |
| SmlI | CTYRAG | 6 cut(s) | 723, 1232, 1249, 1292, 2009, 2204 |
| SmoI | CTYRAG | 6 cut(s) | 723, 1232, 1249, 1292, 2009, 2204 |
| SsiI | CCGC | 5 cut(s) | 790, 950, 1075, 1077, 1532 |
| SspI | AATATT | 1 cut(s) | 1816 |
| SspMI | CTAG | 8 cut(s) | 32, 504, 561, 638, 2082, 2112, 2192, 2307 |
| StyD4I | CCNGG | 3 cut(s) | 166, 542, 1452 |
| StyI | CCWWGG | 1 cut(s) | 275 |
| TaaI | ACNGT | 3 cut(s) | 1008, 1669, 1970 |
| TaiI | ACGT | 3 cut(s) | 343, 751, 1944 |
| TaqI | TCGA | 7 cut(s) | 1390, 1584, 1647, 1697, 2168, 2247, 2299 |
| TatI | WGTACW | 2 cut(s) | 1876, 1883 |
| TfiI | GAWTC | 9 cut(s) | 112, 266, 851, 1000, 1213, 1457, 1519, 1862, 2188 |
| Tru1I | TTAA | 7 cut(s) | 12, 326, 1191, 1293, 1791, 2010, 2205 |
| Tru9I | TTAA | 7 cut(s) | 12, 326, 1191, 1293, 1791, 2010, 2205 |
| TscAI | CASTG | 6 cut(s) | 24, 322, 1030, 1340, 1975, 2334 |
| TseI | GCWGC | 7 cut(s) | 583, 968, 1183, 1228, 1974, 2135, 2279 |
| TspDTI | ATGAA | 7 cut(s) | 505, 665, 788, 1013, 1898, 1911, 2097 |
| TspGWI | ACGGA | 1 cut(s) | 1086 |
| TspRI | CASTG | 6 cut(s) | 24, 322, 1030, 1340, 1975, 2334 |
| Vha464I | CTTAAG | 3 cut(s) | 1292, 2009, 2204 |
| VneI | GTGCAC | 1 cut(s) | 1014 |
| VpaK11BI | GGWCC | 2 cut(s) | 164, 1079 |
| VspI | ATTAAT | 1 cut(s) | 1191 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2223 |
| XapI | RAATTY | 4 cut(s) | 433, 512, 1777, 2242 |
| XceI | RCATGY | 2 cut(s) | 1414, 2369 |
| XmiI | GTMKAC | 2 cut(s) | 533, 634 |
| XspI | CTAG | 8 cut(s) | 32, 504, 561, 638, 2082, 2112, 2192, 2307 |