Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 434 |
| Acc36I | ACCTGC | 1 cut(s) | 434 |
| AccBSI | CCGCTC | 1 cut(s) | 52 |
| AccIII | TCCGGA | 2 cut(s) | 384, 397 |
| AciI | CCGC | 9 cut(s) | 50, 170, 299, 323, 417, 450, 453, 516, 519 |
| AclWI | GGATC | 1 cut(s) | 309 |
| AcoI | YGGCCR | 1 cut(s) | 200 |
| AcsI | RAATTY | 1 cut(s) | 185 |
| AfaI | GTAC | 2 cut(s) | 73, 465 |
| AfeI | AGCGCT | 2 cut(s) | 27, 279 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 54, 55 |
| Alw21I | GWGCWC | 1 cut(s) | 460 |
| Alw26I | GTCTC | 1 cut(s) | 234 |
| AlwI | GGATC | 1 cut(s) | 309 |
| Ama87I | CYCGRG | 1 cut(s) | 53 |
| Aor13HI | TCCGGA | 2 cut(s) | 384, 397 |
| Aor51HI | AGCGCT | 2 cut(s) | 27, 279 |
| AoxI | GGCC | 4 cut(s) | 57, 106, 121, 200 |
| ApeKI | GCWGC | 4 cut(s) | 44, 167, 296, 355 |
| ApoI | RAATTY | 1 cut(s) | 185 |
| AspLEI | GCGC | 2 cut(s) | 28, 280 |
| AspS9I | GGNCC | 2 cut(s) | 57, 544 |
| AsuC2I | CCSGG | 1 cut(s) | 204 |
| AsuHPI | GGTGA | 4 cut(s) | 158, 361, 440, 542 |
| AvaI | CYCGRG | 1 cut(s) | 53 |
| AvaII | GGWCC | 1 cut(s) | 544 |
| BauI | CACGAG | 1 cut(s) | 180 |
| BbsI | GAAGAC | 1 cut(s) | 383 |
| Bbv12I | GWGCWC | 1 cut(s) | 460 |
| BbvCI | CCTCAGC | 1 cut(s) | 281 |
| BbvI | GCAGC | 4 cut(s) | 31, 179, 283, 342 |
| BccI | CCATC | 1 cut(s) | 358 |
| BciVI | GTATCC | 2 cut(s) | 392, 394 |
| BcnI | CCSGG | 1 cut(s) | 204 |
| BcoDI | GTCTC | 1 cut(s) | 234 |
| BfaI | CTAG | 4 cut(s) | 18, 29, 129, 212 |
| BfoI | RGCGCY | 2 cut(s) | 29, 281 |
| BfuAI | ACCTGC | 1 cut(s) | 434 |
| BfuI | GTATCC | 2 cut(s) | 392, 394 |
| BisI | GCNGC | 7 cut(s) | 45, 168, 171, 297, 356, 451, 517 |
| BlsI | GCNGC | 7 cut(s) | 46, 169, 172, 298, 357, 452, 518 |
| Bme1390I | CCNGG | 1 cut(s) | 204 |
| Bme18I | GGWCC | 1 cut(s) | 544 |
| BmeT110I | CYCGRG | 1 cut(s) | 53 |
| BmgT120I | GGNCC | 2 cut(s) | 57, 544 |
| BmiI | GGNNCC | 2 cut(s) | 58, 546 |
| BmrFI | CCNGG | 1 cut(s) | 204 |
| BmsI | GCATC | 1 cut(s) | 154 |
| BpiI | GAAGAC | 1 cut(s) | 383 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 379, 411 |
| Bpu10I | CCTNAGC | 2 cut(s) | 281, 459 |
| BpuMI | CCSGG | 1 cut(s) | 204 |
| BsaBI | GATNNNNATC | 1 cut(s) | 435 |
| BsaI | GGTCTC | 1 cut(s) | 234 |
| BsaWI | WCCGGW | 2 cut(s) | 384, 397 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 135, 165 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 54, 55 |
| Bse1I | ACTGG | 1 cut(s) | 142 |
| Bse8I | GATNNNNATC | 1 cut(s) | 435 |
| BseAI | TCCGGA | 2 cut(s) | 384, 397 |
| BseGI | GGATG | 1 cut(s) | 292 |
| BseJI | GATNNNNATC | 1 cut(s) | 435 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 54, 55 |
| BseMII | CTCAG | 4 cut(s) | 245, 272, 303, 473 |
| BseNI | ACTGG | 1 cut(s) | 142 |
| BseRI | GAGGAG | 1 cut(s) | 540 |
| BseXI | GCAGC | 4 cut(s) | 31, 179, 283, 342 |
| BseYI | CCCAGC | 3 cut(s) | 254, 259, 376 |
| BsgI | GTGCAG | 1 cut(s) | 462 |
| BshFI | GGCC | 4 cut(s) | 59, 108, 123, 202 |
| BsiHKAI | GWGCWC | 1 cut(s) | 460 |
| BsiHKCI | CYCGRG | 1 cut(s) | 53 |
| BsiSI | CCGG | 3 cut(s) | 203, 385, 398 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 54, 55 |
| BsmAI | GTCTC | 1 cut(s) | 234 |
| BsnI | GGCC | 4 cut(s) | 59, 108, 123, 202 |
| Bso31I | GGTCTC | 1 cut(s) | 234 |
| BsoBI | CYCGRG | 1 cut(s) | 53 |
| Bsp1286I | GDGCHC | 1 cut(s) | 460 |
| Bsp13I | TCCGGA | 2 cut(s) | 384, 397 |
| Bsp143I | GATC | 3 cut(s) | 301, 405, 436 |
| BspACI | CCGC | 9 cut(s) | 50, 170, 299, 323, 417, 450, 453, 516, 519 |
| BspANI | GGCC | 4 cut(s) | 59, 108, 123, 202 |
| BspCNI | CTCAG | 4 cut(s) | 244, 273, 304, 472 |
| BspEI | TCCGGA | 2 cut(s) | 384, 397 |
| BspLI | GGNNCC | 2 cut(s) | 58, 546 |
| BspMI | ACCTGC | 1 cut(s) | 434 |
| BspPI | GGATC | 1 cut(s) | 309 |
| BspTNI | GGTCTC | 1 cut(s) | 234 |
| BsrBI | CCGCTC | 1 cut(s) | 52 |
| BsrI | ACTGG | 1 cut(s) | 142 |
| BssMI | GATC | 3 cut(s) | 301, 405, 436 |
| BssSI | CACGAG | 1 cut(s) | 180 |
| Bst2BI | CACGAG | 1 cut(s) | 180 |
| BstC8I | GCNNGC | 2 cut(s) | 61, 200 |
| BstDEI | CTNAG | 4 cut(s) | 231, 281, 312, 459 |
| BstF5I | GGATG | 1 cut(s) | 292 |
| BstH2I | RGCGCY | 2 cut(s) | 29, 281 |
| BstHHI | GCGC | 2 cut(s) | 28, 280 |
| BstKTI | GATC | 3 cut(s) | 304, 408, 439 |
| BstMAI | GTCTC | 1 cut(s) | 234 |
| BstMBI | GATC | 3 cut(s) | 301, 405, 436 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 65 |
| BstSCI | CCNGG | 1 cut(s) | 202 |
| BstV1I | GCAGC | 4 cut(s) | 31, 179, 283, 342 |
| BstV2I | GAAGAC | 1 cut(s) | 383 |
| BsuI | GTATCC | 2 cut(s) | 392, 394 |
| BsuRI | GGCC | 4 cut(s) | 59, 108, 123, 202 |
| BtsCI | GGATG | 1 cut(s) | 292 |
| BveI | ACCTGC | 1 cut(s) | 434 |
| Cac8I | GCNNGC | 2 cut(s) | 61, 200 |
| CfoI | GCGC | 2 cut(s) | 28, 280 |
| Cfr13I | GGNCC | 2 cut(s) | 57, 544 |
| CseI | GACGC | 1 cut(s) | 52 |
| Csp6I | GTAC | 2 cut(s) | 72, 464 |
| CviJI | RGCY | 9 cut(s) | 59, 102, 108, 123, 202, 259, 296, 355, 376 |
| CviKI_1 | RGCY | 9 cut(s) | 59, 102, 108, 123, 202, 259, 296, 355, 376 |
| CviQI | GTAC | 2 cut(s) | 72, 464 |
| DdeI | CTNAG | 4 cut(s) | 231, 281, 312, 459 |
| DpnI | GATC | 3 cut(s) | 303, 407, 438 |
| DpnII | GATC | 3 cut(s) | 301, 405, 436 |
| EaeI | YGGCCR | 1 cut(s) | 200 |
| EciI | GGCGGA | 2 cut(s) | 432, 534 |
| Eco31I | GGTCTC | 1 cut(s) | 234 |
| Eco47I | GGWCC | 1 cut(s) | 544 |
| Eco47III | AGCGCT | 2 cut(s) | 27, 279 |
| Eco88I | CYCGRG | 1 cut(s) | 53 |
| EcoRI | GAATTC | 1 cut(s) | 185 |
| FauI | CCCGC | 2 cut(s) | 57, 316 |
| Fnu4HI | GCNGC | 7 cut(s) | 45, 168, 171, 297, 356, 451, 517 |
| FokI | GGATG | 1 cut(s) | 299 |
| Fsp4HI | GCNGC | 7 cut(s) | 45, 168, 171, 297, 356, 451, 517 |
| FspBI | CTAG | 4 cut(s) | 18, 29, 129, 212 |
| GlaI | GCGC | 2 cut(s) | 27, 279 |
| GluI | GCNGC | 7 cut(s) | 45, 168, 171, 297, 356, 451, 517 |
| GsaI | CCCAGC | 3 cut(s) | 258, 263, 380 |
| HaeII | RGCGCY | 2 cut(s) | 29, 281 |
| HaeIII | GGCC | 4 cut(s) | 59, 108, 123, 202 |
| HapII | CCGG | 3 cut(s) | 203, 385, 398 |
| HgaI | GACGC | 1 cut(s) | 52 |
| HhaI | GCGC | 2 cut(s) | 28, 280 |
| Hin6I | GCGC | 2 cut(s) | 26, 278 |
| HinP1I | GCGC | 2 cut(s) | 26, 278 |
| HincII | GTYRAC | 1 cut(s) | 135 |
| HindII | GTYRAC | 1 cut(s) | 135 |
| HinfI | GANTC | 6 cut(s) | 91, 218, 290, 314, 388, 533 |
| HpaII | CCGG | 3 cut(s) | 203, 385, 398 |
| HphI | GGTGA | 4 cut(s) | 158, 361, 440, 542 |
| Hpy166II | GTNNAC | 1 cut(s) | 135 |
| Hpy188I | TCNGA | 3 cut(s) | 306, 313, 472 |
| Hpy188III | TCNNGA | 4 cut(s) | 182, 212, 385, 398 |
| Hpy8I | GTNNAC | 1 cut(s) | 135 |
| Hpy99I | CGWCG | 1 cut(s) | 68 |
| HpyAV | CCTTC | 1 cut(s) | 85 |
| HpyCH4V | TGCA | 2 cut(s) | 167, 443 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 65 |
| HpyF3I | CTNAG | 4 cut(s) | 231, 281, 312, 459 |
| HspAI | GCGC | 2 cut(s) | 26, 278 |
| Kpn2I | TCCGGA | 2 cut(s) | 384, 397 |
| Kzo9I | GATC | 3 cut(s) | 301, 405, 436 |
| Lsp1109I | GCAGC | 4 cut(s) | 31, 179, 283, 342 |
| LweI | GCATC | 1 cut(s) | 154 |
| MaeI | CTAG | 4 cut(s) | 18, 29, 129, 212 |
| MaeIII | GTNAC | 1 cut(s) | 530 |
| MalI | GATC | 3 cut(s) | 303, 407, 438 |
| MbiI | CCGCTC | 1 cut(s) | 52 |
| MboI | GATC | 3 cut(s) | 301, 405, 436 |
| MboII | GAAGA | 1 cut(s) | 383 |
| MhlI | GDGCHC | 1 cut(s) | 460 |
| MluCI | AATT | 1 cut(s) | 185 |
| MlyI | GAGTC | 3 cut(s) | 323, 397, 527 |
| MroI | TCCGGA | 2 cut(s) | 384, 397 |
| MspA1I | CMGCKG | 1 cut(s) | 170 |
| MspI | CCGG | 3 cut(s) | 203, 385, 398 |
| MspR9I | CCNGG | 1 cut(s) | 204 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 65 |
| NciI | CCSGG | 1 cut(s) | 204 |
| NdeII | GATC | 3 cut(s) | 301, 405, 436 |
| NlaIV | GGNNCC | 2 cut(s) | 58, 546 |
| NmuCI | GTSAC | 1 cut(s) | 530 |
| PaqCI | CACCTGC | 1 cut(s) | 434 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 60 |
| PfeI | GAWTC | 3 cut(s) | 91, 218, 290 |
| PkrI | GCNGC | 7 cut(s) | 46, 169, 172, 298, 357, 452, 518 |
| PleI | GAGTC | 3 cut(s) | 322, 396, 527 |
| PpsI | GAGTC | 3 cut(s) | 322, 396, 527 |
| PspFI | CCCAGC | 3 cut(s) | 254, 259, 376 |
| PspN4I | GGNNCC | 2 cut(s) | 58, 546 |
| PspPI | GGNCC | 2 cut(s) | 57, 544 |
| RsaI | GTAC | 2 cut(s) | 73, 465 |
| RsaNI | GTAC | 2 cut(s) | 72, 464 |
| SatI | GCNGC | 7 cut(s) | 45, 168, 171, 297, 356, 451, 517 |
| Sau3AI | GATC | 3 cut(s) | 301, 405, 436 |
| Sau96I | GGNCC | 2 cut(s) | 57, 544 |
| SchI | GAGTC | 3 cut(s) | 323, 397, 527 |
| ScrFI | CCNGG | 1 cut(s) | 204 |
| SduI | GDGCHC | 1 cut(s) | 460 |
| SfaNI | GCATC | 1 cut(s) | 154 |
| SinI | GGWCC | 1 cut(s) | 544 |
| Sse9I | AATT | 1 cut(s) | 185 |
| SsiI | CCGC | 9 cut(s) | 50, 170, 299, 323, 417, 450, 453, 516, 519 |
| SspMI | CTAG | 4 cut(s) | 18, 29, 129, 212 |
| StyD4I | CCNGG | 1 cut(s) | 202 |
| TaqII | GACCGA | 1 cut(s) | 181 |
| TasI | AATT | 1 cut(s) | 185 |
| TauI | GCSGC | 3 cut(s) | 173, 453, 519 |
| TfiI | GAWTC | 3 cut(s) | 91, 218, 290 |
| TseFI | GTSAC | 1 cut(s) | 530 |
| TseI | GCWGC | 4 cut(s) | 44, 167, 296, 355 |
| Tsp45I | GTSAC | 1 cut(s) | 530 |
| TspDTI | ATGAA | 2 cut(s) | 20, 24 |
| VpaK11BI | GGWCC | 1 cut(s) | 544 |
| XapI | RAATTY | 1 cut(s) | 185 |
| XbaI | TCTAGA | 1 cut(s) | 211 |
| XspI | CTAG | 4 cut(s) | 18, 29, 129, 212 |