Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 100 - 193 | 1.2e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 256 |
| AciI | CCGC | 1 cut(s) | 53 |
| AclWI | GGATC | 1 cut(s) | 492 |
| AcsI | RAATTY | 3 cut(s) | 98, 189, 454 |
| AfaI | GTAC | 3 cut(s) | 196, 207, 656 |
| AflIII | ACRYGT | 1 cut(s) | 331 |
| AgsI | TTSAA | 5 cut(s) | 320, 338, 424, 629, 661 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 398, 430 |
| AluBI | AGCT | 3 cut(s) | 224, 448, 554 |
| AluI | AGCT | 3 cut(s) | 224, 448, 554 |
| Alw21I | GWGCWC | 1 cut(s) | 186 |
| Alw26I | GTCTC | 1 cut(s) | 258 |
| AlwI | GGATC | 1 cut(s) | 492 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 646 |
| Aor13HI | TCCGGA | 1 cut(s) | 256 |
| ApeKI | GCWGC | 5 cut(s) | 448, 554, 569, 578, 710 |
| ApoI | RAATTY | 3 cut(s) | 98, 189, 454 |
| AsuHPI | GGTGA | 1 cut(s) | 319 |
| AsuII | TTCGAA | 1 cut(s) | 461 |
| Bbv12I | GWGCWC | 1 cut(s) | 186 |
| BbvI | GCAGC | 5 cut(s) | 435, 541, 565, 581, 697 |
| BccI | CCATC | 3 cut(s) | 103, 626, 686 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 173, 207 |
| BclI | TGATCA | 1 cut(s) | 156 |
| BcoDI | GTCTC | 1 cut(s) | 258 |
| BfaI | CTAG | 5 cut(s) | 74, 119, 249, 494, 534 |
| BfmI | CTRYAG | 2 cut(s) | 449, 711 |
| BisI | GCNGC | 5 cut(s) | 449, 555, 570, 579, 711 |
| BlsI | GCNGC | 5 cut(s) | 450, 556, 571, 580, 712 |
| BmcAI | AGTACT | 1 cut(s) | 656 |
| BmrI | ACTGGG | 1 cut(s) | 24 |
| BmsI | GCATC | 4 cut(s) | 28, 205, 493, 520 |
| BmuI | ACTGGG | 1 cut(s) | 24 |
| Bpu14I | TTCGAA | 1 cut(s) | 461 |
| BpuEI | CTTGAG | 1 cut(s) | 262 |
| BsaI | GGTCTC | 1 cut(s) | 258 |
| BsaWI | WCCGGW | 1 cut(s) | 256 |
| Bse1I | ACTGG | 1 cut(s) | 19 |
| Bse3DI | GCAATG | 1 cut(s) | 342 |
| BseAI | TCCGGA | 1 cut(s) | 256 |
| BseGI | GGATG | 3 cut(s) | 159, 184, 265 |
| BseMI | GCAATG | 1 cut(s) | 342 |
| BseMII | CTCAG | 3 cut(s) | 502, 573, 579 |
| BseNI | ACTGG | 1 cut(s) | 19 |
| BseRI | GAGGAG | 1 cut(s) | 458 |
| BseXI | GCAGC | 5 cut(s) | 435, 541, 565, 581, 697 |
| BsgI | GTGCAG | 1 cut(s) | 540 |
| BsiHKAI | GWGCWC | 1 cut(s) | 186 |
| BsiSI | CCGG | 1 cut(s) | 257 |
| BslFI | GGGAC | 1 cut(s) | 127 |
| BsmAI | GTCTC | 1 cut(s) | 258 |
| BsmFI | GGGAC | 1 cut(s) | 127 |
| Bso31I | GGTCTC | 1 cut(s) | 258 |
| Bsp119I | TTCGAA | 1 cut(s) | 461 |
| Bsp1286I | GDGCHC | 1 cut(s) | 186 |
| Bsp13I | TCCGGA | 1 cut(s) | 256 |
| Bsp1407I | TGTACA | 1 cut(s) | 205 |
| Bsp143I | GATC | 2 cut(s) | 156, 484 |
| BspACI | CCGC | 1 cut(s) | 53 |
| BspCNI | CTCAG | 3 cut(s) | 501, 574, 580 |
| BspEI | TCCGGA | 1 cut(s) | 256 |
| BspMAI | CTGCAG | 2 cut(s) | 453, 715 |
| BspPI | GGATC | 1 cut(s) | 492 |
| BspT104I | TTCGAA | 1 cut(s) | 461 |
| BspTNI | GGTCTC | 1 cut(s) | 258 |
| BsrDI | GCAATG | 1 cut(s) | 342 |
| BsrGI | TGTACA | 1 cut(s) | 205 |
| BsrI | ACTGG | 1 cut(s) | 19 |
| BssMI | GATC | 2 cut(s) | 156, 484 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 575 |
| BstAUI | TGTACA | 1 cut(s) | 205 |
| BstBI | TTCGAA | 1 cut(s) | 461 |
| BstDEI | CTNAG | 3 cut(s) | 488, 582, 588 |
| BstF5I | GGATG | 3 cut(s) | 159, 184, 265 |
| BstKTI | GATC | 2 cut(s) | 159, 487 |
| BstMAI | GTCTC | 1 cut(s) | 258 |
| BstMBI | GATC | 2 cut(s) | 156, 484 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 230, 551, 575, 578 |
| BstNSI | RCATGY | 1 cut(s) | 335 |
| BstSFI | CTRYAG | 2 cut(s) | 449, 711 |
| BstV1I | GCAGC | 5 cut(s) | 435, 541, 565, 581, 697 |
| BstX2I | RGATCY | 1 cut(s) | 484 |
| BstYI | RGATCY | 1 cut(s) | 484 |
| BtsCI | GGATG | 3 cut(s) | 159, 184, 265 |
| BtsI | GCAGTG | 2 cut(s) | 366, 720 |
| BtsIMutI | CAGTG | 2 cut(s) | 366, 720 |
| CaiI | CAGNNNCTG | 1 cut(s) | 646 |
| Csp6I | GTAC | 3 cut(s) | 195, 206, 655 |
| CviAII | CATG | 3 cut(s) | 332, 380, 530 |
| CviJI | RGCY | 5 cut(s) | 130, 224, 448, 545, 554 |
| CviKI_1 | RGCY | 5 cut(s) | 130, 224, 448, 545, 554 |
| CviQI | GTAC | 3 cut(s) | 195, 206, 655 |
| DdeI | CTNAG | 3 cut(s) | 488, 582, 588 |
| DpnI | GATC | 2 cut(s) | 158, 486 |
| DpnII | GATC | 2 cut(s) | 156, 484 |
| EciI | GGCGGA | 1 cut(s) | 42 |
| Eco31I | GGTCTC | 1 cut(s) | 258 |
| EcoRI | GAATTC | 2 cut(s) | 98, 454 |
| FaeI | CATG | 3 cut(s) | 335, 383, 533 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 114, 146 |
| FaqI | GGGAC | 1 cut(s) | 127 |
| FatI | CATG | 3 cut(s) | 331, 379, 529 |
| FauNDI | CATATG | 1 cut(s) | 561 |
| FbaI | TGATCA | 1 cut(s) | 156 |
| Fnu4HI | GCNGC | 5 cut(s) | 449, 555, 570, 579, 711 |
| FokI | GGATG | 3 cut(s) | 146, 191, 272 |
| Fsp4HI | GCNGC | 5 cut(s) | 449, 555, 570, 579, 711 |
| FspBI | CTAG | 5 cut(s) | 74, 119, 249, 494, 534 |
| GluI | GCNGC | 5 cut(s) | 449, 555, 570, 579, 711 |
| HapII | CCGG | 1 cut(s) | 257 |
| Hin1II | CATG | 3 cut(s) | 335, 383, 533 |
| HinfI | GANTC | 3 cut(s) | 115, 463, 584 |
| HpaII | CCGG | 1 cut(s) | 257 |
| HphI | GGTGA | 1 cut(s) | 319 |
| Hpy188I | TCNGA | 5 cut(s) | 36, 214, 491, 522, 589 |
| Hpy188III | TCNNGA | 8 cut(s) | 26, 106, 119, 140, 257, 440, 629, 641 |
| HpyAV | CCTTC | 6 cut(s) | 81, 116, 295, 465, 531, 627 |
| HpyCH4IV | ACGT | 1 cut(s) | 171 |
| HpyCH4V | TGCA | 6 cut(s) | 135, 218, 451, 506, 557, 713 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 230, 551, 575, 578 |
| HpyF3I | CTNAG | 3 cut(s) | 488, 582, 588 |
| HpySE526I | ACGT | 1 cut(s) | 171 |
| Hsp92II | CATG | 3 cut(s) | 335, 383, 533 |
| Kpn2I | TCCGGA | 1 cut(s) | 256 |
| Ksp22I | TGATCA | 1 cut(s) | 156 |
| Kzo9I | GATC | 2 cut(s) | 156, 484 |
| LmnI | GCTCC | 1 cut(s) | 445 |
| LpnPI | CCDG | 7 cut(s) | 11, 47, 80, 270, 405, 492, 626 |
| Lsp1109I | GCAGC | 5 cut(s) | 435, 541, 565, 581, 697 |
| LweI | GCATC | 4 cut(s) | 28, 205, 493, 520 |
| MaeI | CTAG | 5 cut(s) | 74, 119, 249, 494, 534 |
| MaeII | ACGT | 1 cut(s) | 171 |
| MaeIII | GTNAC | 2 cut(s) | 307, 675 |
| MalI | GATC | 2 cut(s) | 158, 486 |
| MboI | GATC | 2 cut(s) | 156, 484 |
| MboII | GAAGA | 2 cut(s) | 14, 450 |
| MfeI | CAATTG | 1 cut(s) | 431 |
| MflI | RGATCY | 1 cut(s) | 484 |
| MhlI | GDGCHC | 1 cut(s) | 186 |
| MluCI | AATT | 7 cut(s) | 98, 152, 189, 234, 266, 431, 454 |
| MlyI | GAGTC | 2 cut(s) | 109, 593 |
| MmeI | TCCRAC | 1 cut(s) | 381 |
| MnlI | CCTC | 6 cut(s) | 174, 349, 436, 475, 535, 711 |
| MroI | TCCGGA | 1 cut(s) | 256 |
| MseI | TTAA | 3 cut(s) | 269, 681, 730 |
| MslI | CAYNNNNRTG | 2 cut(s) | 107, 213 |
| MspI | CCGG | 1 cut(s) | 257 |
| MunI | CAATTG | 1 cut(s) | 431 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 230, 551, 575, 578 |
| NdeI | CATATG | 1 cut(s) | 561 |
| NdeII | GATC | 2 cut(s) | 156, 484 |
| NlaIII | CATG | 3 cut(s) | 335, 383, 533 |
| NmuCI | GTSAC | 1 cut(s) | 307 |
| NspI | RCATGY | 1 cut(s) | 335 |
| NspV | TTCGAA | 1 cut(s) | 461 |
| PciI | ACATGT | 1 cut(s) | 331 |
| PfeI | GAWTC | 1 cut(s) | 463 |
| PkrI | GCNGC | 5 cut(s) | 450, 556, 571, 580, 712 |
| PleI | GAGTC | 2 cut(s) | 109, 592 |
| PpsI | GAGTC | 2 cut(s) | 109, 592 |
| PscI | ACATGT | 1 cut(s) | 331 |
| PstI | CTGCAG | 2 cut(s) | 453, 715 |
| PstNI | CAGNNNCTG | 1 cut(s) | 646 |
| PsuI | RGATCY | 1 cut(s) | 484 |
| RsaI | GTAC | 3 cut(s) | 196, 207, 656 |
| RsaNI | GTAC | 3 cut(s) | 195, 206, 655 |
| RseI | CAYNNNNRTG | 2 cut(s) | 107, 213 |
| SaqAI | TTAA | 3 cut(s) | 269, 681, 730 |
| SatI | GCNGC | 5 cut(s) | 449, 555, 570, 579, 711 |
| Sau3AI | GATC | 2 cut(s) | 156, 484 |
| ScaI | AGTACT | 1 cut(s) | 656 |
| SchI | GAGTC | 2 cut(s) | 109, 593 |
| SduI | GDGCHC | 1 cut(s) | 186 |
| SfaNI | GCATC | 4 cut(s) | 28, 205, 493, 520 |
| SfcI | CTRYAG | 2 cut(s) | 449, 711 |
| SfuI | TTCGAA | 1 cut(s) | 461 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 107, 213 |
| SmlI | CTYRAG | 1 cut(s) | 241 |
| SmoI | CTYRAG | 1 cut(s) | 241 |
| Sse9I | AATT | 7 cut(s) | 98, 152, 189, 234, 266, 431, 454 |
| SsiI | CCGC | 1 cut(s) | 53 |
| SspMI | CTAG | 5 cut(s) | 74, 119, 249, 494, 534 |
| TaiI | ACGT | 1 cut(s) | 174 |
| TaqI | TCGA | 1 cut(s) | 461 |
| TasI | AATT | 7 cut(s) | 98, 152, 189, 234, 266, 431, 454 |
| TatI | WGTACW | 2 cut(s) | 205, 654 |
| TfiI | GAWTC | 1 cut(s) | 463 |
| Tru1I | TTAA | 3 cut(s) | 269, 681, 730 |
| Tru9I | TTAA | 3 cut(s) | 269, 681, 730 |
| TscAI | CASTG | 2 cut(s) | 366, 720 |
| TseFI | GTSAC | 1 cut(s) | 307 |
| TseI | GCWGC | 5 cut(s) | 448, 554, 569, 578, 710 |
| Tsp45I | GTSAC | 1 cut(s) | 307 |
| TspDTI | ATGAA | 2 cut(s) | 91, 518 |
| TspRI | CASTG | 2 cut(s) | 366, 720 |
| XapI | RAATTY | 3 cut(s) | 98, 189, 454 |
| XbaI | TCTAGA | 1 cut(s) | 118 |
| XceI | RCATGY | 1 cut(s) | 335 |
| XspI | CTAG | 5 cut(s) | 74, 119, 249, 494, 534 |
| ZrmI | AGTACT | 1 cut(s) | 656 |