Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LSM | PF01423 | 9 - 71 | 2.9e-22 | LSM domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 33 |
| AcoI | YGGCCR | 1 cut(s) | 228 |
| AfaI | GTAC | 1 cut(s) | 38 |
| AgsI | TTSAA | 3 cut(s) | 56, 212, 221 |
| AluBI | AGCT | 2 cut(s) | 52, 64 |
| AluI | AGCT | 2 cut(s) | 52, 64 |
| AlwI | GGATC | 1 cut(s) | 33 |
| AoxI | GGCC | 1 cut(s) | 228 |
| AsuC2I | CCSGG | 1 cut(s) | 23 |
| AsuHPI | GGTGA | 2 cut(s) | 164, 193 |
| BalI | TGGCCA | 1 cut(s) | 230 |
| BclI | TGATCA | 1 cut(s) | 183 |
| BcnI | CCSGG | 1 cut(s) | 23 |
| Bme1390I | CCNGG | 1 cut(s) | 23 |
| BmiI | GGNNCC | 1 cut(s) | 91 |
| BmrFI | CCNGG | 1 cut(s) | 23 |
| BpuEI | CTTGAG | 1 cut(s) | 14 |
| BpuMI | CCSGG | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 1 cut(s) | 21 |
| Bse1I | ACTGG | 1 cut(s) | 109 |
| BseDI | CCNNGG | 1 cut(s) | 21 |
| BseNI | ACTGG | 1 cut(s) | 109 |
| BshFI | GGCC | 1 cut(s) | 230 |
| BsiSI | CCGG | 1 cut(s) | 23 |
| BsnI | GGCC | 1 cut(s) | 230 |
| Bsp143I | GATC | 2 cut(s) | 25, 183 |
| BspANI | GGCC | 1 cut(s) | 230 |
| BspHI | TCATGA | 1 cut(s) | 114 |
| BspLI | GGNNCC | 1 cut(s) | 91 |
| BspPI | GGATC | 1 cut(s) | 33 |
| BsrI | ACTGG | 1 cut(s) | 109 |
| BssECI | CCNNGG | 1 cut(s) | 21 |
| BssMI | GATC | 2 cut(s) | 25, 183 |
| Bst4CI | ACNGT | 2 cut(s) | 197, 208 |
| BstKTI | GATC | 2 cut(s) | 28, 186 |
| BstMBI | GATC | 2 cut(s) | 25, 183 |
| BstSCI | CCNGG | 1 cut(s) | 21 |
| BstX2I | RGATCY | 1 cut(s) | 25 |
| BstYI | RGATCY | 1 cut(s) | 25 |
| BsuRI | GGCC | 1 cut(s) | 230 |
| BtsIMutI | CAGTG | 1 cut(s) | 202 |
| CciI | TCATGA | 1 cut(s) | 114 |
| Csp6I | GTAC | 1 cut(s) | 37 |
| CviAII | CATG | 3 cut(s) | 40, 115, 175 |
| CviJI | RGCY | 4 cut(s) | 19, 52, 64, 230 |
| CviKI_1 | RGCY | 4 cut(s) | 19, 52, 64, 230 |
| CviQI | GTAC | 1 cut(s) | 37 |
| DpnI | GATC | 2 cut(s) | 27, 185 |
| DpnII | GATC | 2 cut(s) | 25, 183 |
| EaeI | YGGCCR | 1 cut(s) | 228 |
| FaeI | CATG | 3 cut(s) | 43, 118, 178 |
| FaiI | YATR | 4 cut(s) | 41, 116, 170, 176 |
| FatI | CATG | 3 cut(s) | 39, 114, 174 |
| FbaI | TGATCA | 1 cut(s) | 183 |
| HaeIII | GGCC | 1 cut(s) | 230 |
| HapII | CCGG | 1 cut(s) | 23 |
| Hin1II | CATG | 3 cut(s) | 43, 118, 178 |
| HindIII | AAGCTT | 1 cut(s) | 50 |
| HinfI | GANTC | 1 cut(s) | 118 |
| HpaII | CCGG | 1 cut(s) | 23 |
| HphI | GGTGA | 2 cut(s) | 164, 193 |
| Hpy188I | TCNGA | 1 cut(s) | 188 |
| Hpy188III | TCNNGA | 2 cut(s) | 31, 115 |
| HpyCH4III | ACNGT | 2 cut(s) | 197, 208 |
| HpyCH4V | TGCA | 2 cut(s) | 71, 238 |
| Hsp92II | CATG | 3 cut(s) | 43, 118, 178 |
| Ksp22I | TGATCA | 1 cut(s) | 183 |
| Kzo9I | GATC | 2 cut(s) | 25, 183 |
| LpnPI | CCDG | 4 cut(s) | 36, 107, 122, 237 |
| MaeIII | GTNAC | 1 cut(s) | 202 |
| MalI | GATC | 2 cut(s) | 27, 185 |
| MboI | GATC | 2 cut(s) | 25, 183 |
| MflI | RGATCY | 1 cut(s) | 25 |
| MlsI | TGGCCA | 1 cut(s) | 230 |
| MluNI | TGGCCA | 1 cut(s) | 230 |
| MmeI | TCCRAC | 1 cut(s) | 67 |
| MnlI | CCTC | 1 cut(s) | 182 |
| Mox20I | TGGCCA | 1 cut(s) | 230 |
| MscI | TGGCCA | 1 cut(s) | 230 |
| MslI | CAYNNNNRTG | 2 cut(s) | 173, 179 |
| Msp20I | TGGCCA | 1 cut(s) | 230 |
| MspI | CCGG | 1 cut(s) | 23 |
| MspR9I | CCNGG | 1 cut(s) | 23 |
| NciI | CCSGG | 1 cut(s) | 23 |
| NdeII | GATC | 2 cut(s) | 25, 183 |
| NlaIII | CATG | 3 cut(s) | 43, 118, 178 |
| NlaIV | GGNNCC | 1 cut(s) | 91 |
| PagI | TCATGA | 1 cut(s) | 114 |
| PfeI | GAWTC | 1 cut(s) | 118 |
| PspN4I | GGNNCC | 1 cut(s) | 91 |
| PsuI | RGATCY | 1 cut(s) | 25 |
| RsaI | GTAC | 1 cut(s) | 38 |
| RsaNI | GTAC | 1 cut(s) | 37 |
| RseI | CAYNNNNRTG | 2 cut(s) | 173, 179 |
| Sau3AI | GATC | 2 cut(s) | 25, 183 |
| ScrFI | CCNGG | 1 cut(s) | 23 |
| SetI | ASST | 6 cut(s) | 11, 16, 54, 66, 95, 226 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 173, 179 |
| SmlI | CTYRAG | 1 cut(s) | 29 |
| SmoI | CTYRAG | 1 cut(s) | 29 |
| StyD4I | CCNGG | 1 cut(s) | 21 |
| TaaI | ACNGT | 2 cut(s) | 197, 208 |
| TaqII | GACCGA | 1 cut(s) | 179 |
| TatI | WGTACW | 1 cut(s) | 36 |
| TfiI | GAWTC | 1 cut(s) | 118 |
| TscAI | CASTG | 1 cut(s) | 202 |
| TspDTI | ATGAA | 3 cut(s) | 103, 131, 171 |
| TspRI | CASTG | 1 cut(s) | 202 |