Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 314 |
| Acc36I | ACCTGC | 1 cut(s) | 314 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 309 |
| AccIII | TCCGGA | 1 cut(s) | 85 |
| AcuI | CTGAAG | 1 cut(s) | 441 |
| AfaI | GTAC | 1 cut(s) | 222 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 309, 323 |
| AflIII | ACRYGT | 1 cut(s) | 290 |
| AgsI | TTSAA | 2 cut(s) | 421, 581 |
| AjiI | CACGTC | 1 cut(s) | 293 |
| AjnI | CCWGG | 2 cut(s) | 223, 673 |
| AluBI | AGCT | 3 cut(s) | 131, 428, 455 |
| AluI | AGCT | 3 cut(s) | 131, 428, 455 |
| Alw26I | GTCTC | 2 cut(s) | 396, 493 |
| Aor13HI | TCCGGA | 1 cut(s) | 85 |
| ApeKI | GCWGC | 2 cut(s) | 320, 666 |
| AsuHPI | GGTGA | 1 cut(s) | 161 |
| BanII | GRGCYC | 1 cut(s) | 509 |
| BauI | CACGAG | 1 cut(s) | 171 |
| BbvI | GCAGC | 2 cut(s) | 307, 678 |
| BccI | CCATC | 2 cut(s) | 344, 443 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 590, 624 |
| BciT130I | CCWGG | 2 cut(s) | 225, 675 |
| BclI | TGATCA | 1 cut(s) | 30 |
| BcoDI | GTCTC | 2 cut(s) | 396, 493 |
| BfaI | CTAG | 1 cut(s) | 267 |
| BfmI | CTRYAG | 3 cut(s) | 321, 447, 651 |
| BfuAI | ACCTGC | 1 cut(s) | 314 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 675 |
| BglII | AGATCT | 1 cut(s) | 190 |
| BisI | GCNGC | 2 cut(s) | 321, 667 |
| BlpI | GCTNAGC | 1 cut(s) | 662 |
| BlsI | GCNGC | 2 cut(s) | 322, 668 |
| Bme1390I | CCNGG | 2 cut(s) | 225, 675 |
| BmgBI | CACGTC | 1 cut(s) | 293 |
| BmrFI | CCNGG | 2 cut(s) | 225, 675 |
| BmrI | ACTGGG | 2 cut(s) | 396, 512 |
| BmsI | GCATC | 2 cut(s) | 48, 538 |
| BmuI | ACTGGG | 2 cut(s) | 396, 512 |
| BpmI | CTGGAG | 2 cut(s) | 542, 657 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 662 |
| BsaJI | CCNNGG | 1 cut(s) | 409 |
| BsaWI | WCCGGW | 1 cut(s) | 85 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 309, 323 |
| Bse1I | ACTGG | 3 cut(s) | 391, 507, 525 |
| BseAI | TCCGGA | 1 cut(s) | 85 |
| BseBI | CCWGG | 2 cut(s) | 225, 675 |
| BseDI | CCNNGG | 1 cut(s) | 409 |
| BseGI | GGATG | 3 cut(s) | 355, 435, 553 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 309, 323 |
| BseNI | ACTGG | 3 cut(s) | 391, 507, 525 |
| BseXI | GCAGC | 2 cut(s) | 307, 678 |
| BsiSI | CCGG | 1 cut(s) | 86 |
| BslFI | GGGAC | 1 cut(s) | 531 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 309, 323 |
| BsmAI | GTCTC | 2 cut(s) | 396, 493 |
| BsmBI | CGTCTC | 1 cut(s) | 396 |
| BsmFI | GGGAC | 1 cut(s) | 531 |
| Bsp1286I | GDGCHC | 1 cut(s) | 509 |
| Bsp13I | TCCGGA | 1 cut(s) | 85 |
| Bsp143I | GATC | 2 cut(s) | 30, 190 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 662 |
| BspEI | TCCGGA | 1 cut(s) | 85 |
| BspMAI | CTGCAG | 1 cut(s) | 325 |
| BspMI | ACCTGC | 1 cut(s) | 314 |
| BsrI | ACTGG | 3 cut(s) | 391, 507, 525 |
| BssECI | CCNNGG | 1 cut(s) | 409 |
| BssMI | GATC | 2 cut(s) | 30, 190 |
| BssSI | CACGAG | 1 cut(s) | 171 |
| BssT1I | CCWWGG | 1 cut(s) | 409 |
| Bst2BI | CACGAG | 1 cut(s) | 171 |
| Bst2UI | CCWGG | 2 cut(s) | 225, 675 |
| Bst4CI | ACNGT | 3 cut(s) | 62, 278, 451 |
| BstC8I | GCNNGC | 1 cut(s) | 318 |
| BstDEI | CTNAG | 1 cut(s) | 662 |
| BstEII | GGTNACC | 1 cut(s) | 176 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 321 |
| BstF5I | GGATG | 3 cut(s) | 355, 435, 553 |
| BstKTI | GATC | 2 cut(s) | 33, 193 |
| BstMAI | GTCTC | 2 cut(s) | 396, 493 |
| BstMBI | GATC | 2 cut(s) | 30, 190 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 675 |
| BstNI | CCWGG | 2 cut(s) | 225, 675 |
| BstNSI | RCATGY | 1 cut(s) | 206 |
| BstPI | GGTNACC | 1 cut(s) | 176 |
| BstSCI | CCNGG | 2 cut(s) | 223, 673 |
| BstSFI | CTRYAG | 3 cut(s) | 321, 447, 651 |
| BstV1I | GCAGC | 2 cut(s) | 307, 678 |
| BstX2I | RGATCY | 1 cut(s) | 190 |
| BstYI | RGATCY | 1 cut(s) | 190 |
| BtrI | CACGTC | 1 cut(s) | 293 |
| BtsCI | GGATG | 3 cut(s) | 355, 435, 553 |
| BtsIMutI | CAGTG | 1 cut(s) | 283 |
| BveI | ACCTGC | 1 cut(s) | 314 |
| Cac8I | GCNNGC | 1 cut(s) | 318 |
| Csp6I | GTAC | 1 cut(s) | 221 |
| CviAII | CATG | 6 cut(s) | 28, 203, 241, 377, 536, 562 |
| CviQI | GTAC | 1 cut(s) | 221 |
| DdeI | CTNAG | 1 cut(s) | 662 |
| DpnI | GATC | 2 cut(s) | 32, 192 |
| DpnII | GATC | 2 cut(s) | 30, 190 |
| DraI | TTTAAA | 1 cut(s) | 187 |
| Eco130I | CCWWGG | 1 cut(s) | 409 |
| Eco24I | GRGCYC | 1 cut(s) | 509 |
| Eco32I | GATATC | 1 cut(s) | 573 |
| Eco57I | CTGAAG | 1 cut(s) | 441 |
| Eco91I | GGTNACC | 1 cut(s) | 176 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 321 |
| EcoO65I | GGTNACC | 1 cut(s) | 176 |
| EcoRII | CCWGG | 2 cut(s) | 223, 673 |
| EcoRV | GATATC | 1 cut(s) | 573 |
| EcoT14I | CCWWGG | 1 cut(s) | 409 |
| EcoT22I | ATGCAT | 1 cut(s) | 41 |
| EcoT38I | GRGCYC | 1 cut(s) | 509 |
| ErhI | CCWWGG | 1 cut(s) | 409 |
| Esp3I | CGTCTC | 1 cut(s) | 396 |
| FaeI | CATG | 6 cut(s) | 31, 206, 244, 380, 539, 565 |
| FaqI | GGGAC | 1 cut(s) | 531 |
| FatI | CATG | 6 cut(s) | 27, 202, 240, 376, 535, 561 |
| FauNDI | CATATG | 4 cut(s) | 35, 511, 634, 714 |
| FbaI | TGATCA | 1 cut(s) | 30 |
| Fnu4HI | GCNGC | 2 cut(s) | 321, 667 |
| FokI | GGATG | 3 cut(s) | 362, 422, 560 |
| FriOI | GRGCYC | 1 cut(s) | 509 |
| Fsp4HI | GCNGC | 2 cut(s) | 321, 667 |
| FspBI | CTAG | 1 cut(s) | 267 |
| GluI | GCNGC | 2 cut(s) | 321, 667 |
| GsuI | CTGGAG | 2 cut(s) | 542, 657 |
| HapII | CCGG | 1 cut(s) | 86 |
| Hin1II | CATG | 6 cut(s) | 31, 206, 244, 380, 539, 565 |
| HindIII | AAGCTT | 1 cut(s) | 426 |
| HinfI | GANTC | 2 cut(s) | 82, 528 |
| HpaII | CCGG | 1 cut(s) | 86 |
| HphI | GGTGA | 1 cut(s) | 161 |
| Hpy188III | TCNNGA | 2 cut(s) | 86, 112 |
| Hpy99I | CGWCG | 1 cut(s) | 297 |
| HpyAV | CCTTC | 4 cut(s) | 254, 485, 632, 701 |
| HpyCH4III | ACNGT | 3 cut(s) | 62, 278, 451 |
| HpyCH4IV | ACGT | 1 cut(s) | 292 |
| HpyCH4V | TGCA | 4 cut(s) | 10, 39, 323, 611 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 675 |
| HpyF3I | CTNAG | 1 cut(s) | 662 |
| HpySE526I | ACGT | 1 cut(s) | 292 |
| Hsp92II | CATG | 6 cut(s) | 31, 206, 244, 380, 539, 565 |
| Kpn2I | TCCGGA | 1 cut(s) | 85 |
| Ksp22I | TGATCA | 1 cut(s) | 30 |
| Kzo9I | GATC | 2 cut(s) | 30, 190 |
| Lsp1109I | GCAGC | 2 cut(s) | 307, 678 |
| LweI | GCATC | 2 cut(s) | 48, 538 |
| MaeI | CTAG | 1 cut(s) | 267 |
| MaeII | ACGT | 1 cut(s) | 292 |
| MaeIII | GTNAC | 4 cut(s) | 176, 442, 706, 719 |
| MalI | GATC | 2 cut(s) | 32, 192 |
| MboI | GATC | 2 cut(s) | 30, 190 |
| MboII | GAAGA | 1 cut(s) | 159 |
| MflI | RGATCY | 1 cut(s) | 190 |
| MhlI | GDGCHC | 1 cut(s) | 509 |
| MluCI | AATT | 3 cut(s) | 5, 163, 606 |
| MlyI | GAGTC | 2 cut(s) | 91, 537 |
| MmeI | TCCRAC | 1 cut(s) | 59 |
| MnlI | CCTC | 6 cut(s) | 58, 89, 205, 517, 568, 681 |
| Mph1103I | ATGCAT | 1 cut(s) | 41 |
| MroI | TCCGGA | 1 cut(s) | 85 |
| MseI | TTAA | 2 cut(s) | 186, 246 |
| MslI | CAYNNNNRTG | 1 cut(s) | 717 |
| MspI | CCGG | 1 cut(s) | 86 |
| MspR9I | CCNGG | 2 cut(s) | 225, 675 |
| MvaI | CCWGG | 2 cut(s) | 225, 675 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 675 |
| NdeI | CATATG | 4 cut(s) | 35, 511, 634, 714 |
| NdeII | GATC | 2 cut(s) | 30, 190 |
| NlaIII | CATG | 6 cut(s) | 31, 206, 244, 380, 539, 565 |
| NmuCI | GTSAC | 2 cut(s) | 442, 719 |
| NsiI | ATGCAT | 1 cut(s) | 41 |
| NspI | RCATGY | 1 cut(s) | 206 |
| PaqCI | CACCTGC | 1 cut(s) | 314 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 309 |
| PkrI | GCNGC | 2 cut(s) | 322, 668 |
| PleI | GAGTC | 2 cut(s) | 90, 536 |
| PpsI | GAGTC | 2 cut(s) | 90, 536 |
| Psp6I | CCWGG | 2 cut(s) | 223, 673 |
| PspEI | GGTNACC | 1 cut(s) | 176 |
| PspGI | CCWGG | 2 cut(s) | 223, 673 |
| PstI | CTGCAG | 1 cut(s) | 325 |
| PsuI | RGATCY | 1 cut(s) | 190 |
| RsaI | GTAC | 1 cut(s) | 222 |
| RsaNI | GTAC | 1 cut(s) | 221 |
| RseI | CAYNNNNRTG | 1 cut(s) | 717 |
| SaqAI | TTAA | 2 cut(s) | 186, 246 |
| SatI | GCNGC | 2 cut(s) | 321, 667 |
| Sau3AI | GATC | 2 cut(s) | 30, 190 |
| SchI | GAGTC | 2 cut(s) | 91, 537 |
| ScrFI | CCNGG | 2 cut(s) | 225, 675 |
| SduI | GDGCHC | 1 cut(s) | 509 |
| SfaNI | GCATC | 2 cut(s) | 48, 538 |
| SfcI | CTRYAG | 3 cut(s) | 321, 447, 651 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 717 |
| Sse9I | AATT | 3 cut(s) | 5, 163, 606 |
| SspMI | CTAG | 1 cut(s) | 267 |
| StyD4I | CCNGG | 2 cut(s) | 223, 673 |
| StyI | CCWWGG | 1 cut(s) | 409 |
| TaaI | ACNGT | 3 cut(s) | 62, 278, 451 |
| TaiI | ACGT | 1 cut(s) | 295 |
| TaqI | TCGA | 3 cut(s) | 55, 133, 373 |
| TaqII | GACCGA | 1 cut(s) | 97 |
| TasI | AATT | 3 cut(s) | 5, 163, 606 |
| Tru1I | TTAA | 2 cut(s) | 186, 246 |
| Tru9I | TTAA | 2 cut(s) | 186, 246 |
| TscAI | CASTG | 1 cut(s) | 283 |
| TseFI | GTSAC | 2 cut(s) | 442, 719 |
| TseI | GCWGC | 2 cut(s) | 320, 666 |
| Tsp45I | GTSAC | 2 cut(s) | 442, 719 |
| TspDTI | ATGAA | 4 cut(s) | 17, 349, 356, 651 |
| TspRI | CASTG | 1 cut(s) | 283 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 309 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 321 |
| XceI | RCATGY | 1 cut(s) | 206 |
| XspI | CTAG | 1 cut(s) | 267 |
| Zsp2I | ATGCAT | 1 cut(s) | 41 |