Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 273 |
| AccB1I | GGYRCC | 1 cut(s) | 88 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 85 |
| AciI | CCGC | 1 cut(s) | 22 |
| AclWI | GGATC | 2 cut(s) | 29, 540 |
| AfaI | GTAC | 1 cut(s) | 202 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 85, 125, 462, 671 |
| AflIII | ACRYGT | 1 cut(s) | 401 |
| AgeI | ACCGGT | 1 cut(s) | 455 |
| AgsI | TTSAA | 4 cut(s) | 215, 584, 605, 706 |
| AjnI | CCWGG | 2 cut(s) | 260, 653 |
| AleI | CACNNNNGTG | 1 cut(s) | 94 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 388, 420 |
| AluBI | AGCT | 6 cut(s) | 277, 544, 560, 566, 587, 608 |
| AluI | AGCT | 6 cut(s) | 277, 544, 560, 566, 587, 608 |
| Alw21I | GWGCWC | 1 cut(s) | 364 |
| Alw26I | GTCTC | 1 cut(s) | 146 |
| Alw44I | GTGCAC | 1 cut(s) | 360 |
| AlwI | GGATC | 2 cut(s) | 29, 540 |
| AoxI | GGCC | 1 cut(s) | 650 |
| ApaLI | GTGCAC | 1 cut(s) | 360 |
| ApeKI | GCWGC | 1 cut(s) | 173 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 506, 538 |
| AsiGI | ACCGGT | 1 cut(s) | 455 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 545 |
| AspA2I | CCTAGG | 1 cut(s) | 632 |
| AspS9I | GGNCC | 2 cut(s) | 12, 651 |
| AsuHPI | GGTGA | 3 cut(s) | 112, 445, 470 |
| AvaII | GGWCC | 1 cut(s) | 12 |
| AvrII | CCTAGG | 1 cut(s) | 632 |
| BaeGI | GKGCMC | 1 cut(s) | 364 |
| BanI | GGYRCC | 1 cut(s) | 88 |
| Bbv12I | GWGCWC | 1 cut(s) | 364 |
| BbvI | GCAGC | 1 cut(s) | 160 |
| BccI | CCATC | 2 cut(s) | 455, 673 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 152, 186 |
| BciT130I | CCWGG | 2 cut(s) | 262, 655 |
| BcoDI | GTCTC | 1 cut(s) | 146 |
| BfaI | CTAG | 4 cut(s) | 150, 318, 557, 633 |
| BisI | GCNGC | 1 cut(s) | 174 |
| BlnI | CCTAGG | 1 cut(s) | 632 |
| BlsI | GCNGC | 1 cut(s) | 175 |
| BmcAI | AGTACT | 1 cut(s) | 202 |
| Bme1390I | CCNGG | 2 cut(s) | 262, 655 |
| Bme18I | GGWCC | 1 cut(s) | 12 |
| BmgT120I | GGNCC | 2 cut(s) | 12, 651 |
| BmiI | GGNNCC | 2 cut(s) | 13, 90 |
| BmrFI | CCNGG | 2 cut(s) | 262, 655 |
| BmsI | GCATC | 4 cut(s) | 33, 160, 355, 648 |
| BpmI | CTGGAG | 1 cut(s) | 546 |
| BsaI | GGTCTC | 1 cut(s) | 146 |
| BsaJI | CCNNGG | 3 cut(s) | 38, 632, 653 |
| BsaWI | WCCGGW | 1 cut(s) | 455 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 85, 125, 462, 671 |
| Bse118I | RCCGGY | 1 cut(s) | 455 |
| Bse1I | ACTGG | 1 cut(s) | 365 |
| Bse3DI | GCAATG | 1 cut(s) | 711 |
| BseBI | CCWGG | 2 cut(s) | 262, 655 |
| BseDI | CCNNGG | 3 cut(s) | 38, 632, 653 |
| BseGI | GGATG | 3 cut(s) | 24, 172, 663 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 85, 125, 462, 671 |
| BseMI | GCAATG | 1 cut(s) | 711 |
| BseMII | CTCAG | 2 cut(s) | 564, 602 |
| BseNI | ACTGG | 1 cut(s) | 365 |
| BseSI | GKGCMC | 1 cut(s) | 364 |
| BseXI | GCAGC | 1 cut(s) | 160 |
| BseYI | CCCAGC | 1 cut(s) | 730 |
| BsgI | GTGCAG | 1 cut(s) | 159 |
| BshFI | GGCC | 1 cut(s) | 652 |
| BshNI | GGYRCC | 1 cut(s) | 88 |
| BshTI | ACCGGT | 1 cut(s) | 455 |
| BsiHKAI | GWGCWC | 1 cut(s) | 364 |
| BsiSI | CCGG | 1 cut(s) | 456 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 85, 125, 462, 671 |
| BsmAI | GTCTC | 1 cut(s) | 146 |
| BsnI | GGCC | 1 cut(s) | 652 |
| Bso31I | GGTCTC | 1 cut(s) | 146 |
| Bsp1286I | GDGCHC | 1 cut(s) | 364 |
| Bsp143I | GATC | 2 cut(s) | 34, 532 |
| Bsp19I | CCATGG | 1 cut(s) | 38 |
| BspACI | CCGC | 1 cut(s) | 22 |
| BspANI | GGCC | 1 cut(s) | 652 |
| BspCNI | CTCAG | 2 cut(s) | 565, 601 |
| BspLI | GGNNCC | 2 cut(s) | 13, 90 |
| BspPI | GGATC | 2 cut(s) | 29, 540 |
| BspT107I | GGYRCC | 1 cut(s) | 88 |
| BspTNI | GGTCTC | 1 cut(s) | 146 |
| BsrDI | GCAATG | 1 cut(s) | 711 |
| BsrFI | RCCGGY | 1 cut(s) | 455 |
| BsrI | ACTGG | 1 cut(s) | 365 |
| BssAI | RCCGGY | 1 cut(s) | 455 |
| BssECI | CCNNGG | 3 cut(s) | 38, 632, 653 |
| BssMI | GATC | 2 cut(s) | 34, 532 |
| BssT1I | CCWWGG | 2 cut(s) | 38, 632 |
| Bst2UI | CCWGG | 2 cut(s) | 262, 655 |
| Bst4CI | ACNGT | 3 cut(s) | 69, 186, 518 |
| BstC8I | GCNNGC | 3 cut(s) | 279, 360, 372 |
| BstDEI | CTNAG | 3 cut(s) | 441, 573, 588 |
| BstDSI | CCRYGG | 1 cut(s) | 38 |
| BstF5I | GGATG | 3 cut(s) | 24, 172, 663 |
| BstKTI | GATC | 2 cut(s) | 37, 535 |
| BstMAI | GTCTC | 1 cut(s) | 146 |
| BstMBI | GATC | 2 cut(s) | 34, 532 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 229, 442, 658 |
| BstNI | CCWGG | 2 cut(s) | 262, 655 |
| BstNSI | RCATGY | 2 cut(s) | 59, 405 |
| BstSCI | CCNGG | 2 cut(s) | 260, 653 |
| BstSLI | GKGCMC | 1 cut(s) | 364 |
| BstV1I | GCAGC | 1 cut(s) | 160 |
| BstX2I | RGATCY | 1 cut(s) | 532 |
| BstYI | RGATCY | 1 cut(s) | 532 |
| BsuRI | GGCC | 1 cut(s) | 652 |
| BtgI | CCRYGG | 1 cut(s) | 38 |
| BtsCI | GGATG | 3 cut(s) | 24, 172, 663 |
| BtsIMutI | CAGTG | 2 cut(s) | 372, 675 |
| Cac8I | GCNNGC | 3 cut(s) | 279, 360, 372 |
| Cfr10I | RCCGGY | 1 cut(s) | 455 |
| Cfr13I | GGNCC | 2 cut(s) | 12, 651 |
| Csp6I | GTAC | 1 cut(s) | 201 |
| CspAI | ACCGGT | 1 cut(s) | 455 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 706, 741 |
| CviAII | CATG | 5 cut(s) | 39, 56, 80, 389, 402 |
| CviQI | GTAC | 1 cut(s) | 201 |
| DdeI | CTNAG | 3 cut(s) | 441, 573, 588 |
| DpnI | GATC | 2 cut(s) | 36, 534 |
| DpnII | GATC | 2 cut(s) | 34, 532 |
| Eco130I | CCWWGG | 2 cut(s) | 38, 632 |
| Eco31I | GGTCTC | 1 cut(s) | 146 |
| Eco47I | GGWCC | 1 cut(s) | 12 |
| EcoO109I | RGGNCCY | 2 cut(s) | 12, 651 |
| EcoRII | CCWGG | 2 cut(s) | 260, 653 |
| EcoT14I | CCWWGG | 2 cut(s) | 38, 632 |
| ErhI | CCWWGG | 2 cut(s) | 38, 632 |
| FaeI | CATG | 5 cut(s) | 42, 59, 83, 392, 405 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 266, 298 |
| FatI | CATG | 5 cut(s) | 38, 55, 79, 388, 401 |
| Fnu4HI | GCNGC | 1 cut(s) | 174 |
| FokI | GGATG | 3 cut(s) | 11, 179, 670 |
| Fsp4HI | GCNGC | 1 cut(s) | 174 |
| FspBI | CTAG | 4 cut(s) | 150, 318, 557, 633 |
| GluI | GCNGC | 1 cut(s) | 174 |
| GsaI | CCCAGC | 1 cut(s) | 734 |
| GsuI | CTGGAG | 1 cut(s) | 546 |
| HaeIII | GGCC | 1 cut(s) | 652 |
| HapII | CCGG | 1 cut(s) | 456 |
| Hin1II | CATG | 5 cut(s) | 42, 59, 83, 392, 405 |
| HindIII | AAGCTT | 3 cut(s) | 275, 542, 606 |
| HinfI | GANTC | 5 cut(s) | 43, 112, 491, 577, 735 |
| HpaII | CCGG | 1 cut(s) | 456 |
| HphI | GGTGA | 3 cut(s) | 112, 445, 470 |
| Hpy166II | GTNNAC | 1 cut(s) | 362 |
| Hpy188I | TCNGA | 3 cut(s) | 207, 574, 648 |
| Hpy188III | TCNNGA | 2 cut(s) | 28, 613 |
| Hpy8I | GTNNAC | 1 cut(s) | 362 |
| HpyAV | CCTTC | 3 cut(s) | 97, 238, 633 |
| HpyCH4III | ACNGT | 3 cut(s) | 69, 186, 518 |
| HpyCH4IV | ACGT | 1 cut(s) | 511 |
| HpyCH4V | TGCA | 4 cut(s) | 176, 362, 477, 711 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 229, 442, 658 |
| HpyF3I | CTNAG | 3 cut(s) | 441, 573, 588 |
| HpySE526I | ACGT | 1 cut(s) | 511 |
| Hsp92II | CATG | 5 cut(s) | 42, 59, 83, 392, 405 |
| Kzo9I | GATC | 2 cut(s) | 34, 532 |
| LmnI | GCTCC | 1 cut(s) | 565 |
| Lsp1109I | GCAGC | 1 cut(s) | 160 |
| LweI | GCATC | 4 cut(s) | 33, 160, 355, 648 |
| MaeI | CTAG | 4 cut(s) | 150, 318, 557, 633 |
| MaeII | ACGT | 1 cut(s) | 511 |
| MaeIII | GTNAC | 2 cut(s) | 334, 512 |
| MalI | GATC | 2 cut(s) | 36, 534 |
| MboI | GATC | 2 cut(s) | 34, 532 |
| MboII | GAAGA | 4 cut(s) | 107, 500, 572, 618 |
| MfeI | CAATTG | 1 cut(s) | 431 |
| MflI | RGATCY | 1 cut(s) | 532 |
| MhlI | GDGCHC | 1 cut(s) | 364 |
| MluCI | AATT | 1 cut(s) | 431 |
| MlyI | GAGTC | 1 cut(s) | 744 |
| MmeI | TCCRAC | 1 cut(s) | 656 |
| MnlI | CCTC | 8 cut(s) | 25, 157, 325, 418, 605, 630, 642, 672 |
| MroXI | GAANNNNTTC | 1 cut(s) | 545 |
| MseI | TTAA | 1 cut(s) | 681 |
| MslI | CAYNNNNRTG | 2 cut(s) | 94, 300 |
| MspI | CCGG | 1 cut(s) | 456 |
| MspR9I | CCNGG | 2 cut(s) | 262, 655 |
| MunI | CAATTG | 1 cut(s) | 431 |
| MvaI | CCWGG | 2 cut(s) | 262, 655 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 229, 442, 658 |
| NcoI | CCATGG | 1 cut(s) | 38 |
| NdeII | GATC | 2 cut(s) | 34, 532 |
| NlaIII | CATG | 5 cut(s) | 42, 59, 83, 392, 405 |
| NlaIV | GGNNCC | 2 cut(s) | 13, 90 |
| NmuCI | GTSAC | 1 cut(s) | 512 |
| NspI | RCATGY | 2 cut(s) | 59, 405 |
| OliI | CACNNNNGTG | 1 cut(s) | 94 |
| PciI | ACATGT | 1 cut(s) | 401 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 355 |
| PdmI | GAANNNNTTC | 1 cut(s) | 545 |
| PfeI | GAWTC | 4 cut(s) | 43, 112, 491, 577 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 85 |
| PinAI | ACCGGT | 1 cut(s) | 455 |
| PkrI | GCNGC | 1 cut(s) | 175 |
| PleI | GAGTC | 1 cut(s) | 743 |
| PpsI | GAGTC | 1 cut(s) | 743 |
| PpuMI | RGGWCCY | 1 cut(s) | 12 |
| PscI | ACATGT | 1 cut(s) | 401 |
| PsiI | TTATAA | 1 cut(s) | 273 |
| Psp5II | RGGWCCY | 1 cut(s) | 12 |
| Psp6I | CCWGG | 2 cut(s) | 260, 653 |
| PspFI | CCCAGC | 1 cut(s) | 730 |
| PspGI | CCWGG | 2 cut(s) | 260, 653 |
| PspN4I | GGNNCC | 2 cut(s) | 13, 90 |
| PspPI | GGNCC | 2 cut(s) | 12, 651 |
| PspPPI | RGGWCCY | 1 cut(s) | 12 |
| PsuI | RGATCY | 1 cut(s) | 532 |
| RsaI | GTAC | 1 cut(s) | 202 |
| RsaNI | GTAC | 1 cut(s) | 201 |
| RseI | CAYNNNNRTG | 2 cut(s) | 94, 300 |
| SaqAI | TTAA | 1 cut(s) | 681 |
| SatI | GCNGC | 1 cut(s) | 174 |
| Sau3AI | GATC | 2 cut(s) | 34, 532 |
| Sau96I | GGNCC | 2 cut(s) | 12, 651 |
| ScaI | AGTACT | 1 cut(s) | 202 |
| SchI | GAGTC | 1 cut(s) | 744 |
| ScrFI | CCNGG | 2 cut(s) | 262, 655 |
| SduI | GDGCHC | 1 cut(s) | 364 |
| SfaNI | GCATC | 4 cut(s) | 33, 160, 355, 648 |
| SgrAI | CRCCGGYG | 1 cut(s) | 455 |
| SinI | GGWCC | 1 cut(s) | 12 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 94, 300 |
| Sse9I | AATT | 1 cut(s) | 431 |
| SsiI | CCGC | 1 cut(s) | 22 |
| SspMI | CTAG | 4 cut(s) | 150, 318, 557, 633 |
| StyD4I | CCNGG | 2 cut(s) | 260, 653 |
| StyI | CCWWGG | 2 cut(s) | 38, 632 |
| TaaI | ACNGT | 3 cut(s) | 69, 186, 518 |
| TaiI | ACGT | 1 cut(s) | 514 |
| TaqI | TCGA | 1 cut(s) | 640 |
| TasI | AATT | 1 cut(s) | 431 |
| TatI | WGTACW | 1 cut(s) | 200 |
| TfiI | GAWTC | 4 cut(s) | 43, 112, 491, 577 |
| Tru1I | TTAA | 1 cut(s) | 681 |
| Tru9I | TTAA | 1 cut(s) | 681 |
| TscAI | CASTG | 2 cut(s) | 372, 675 |
| TseFI | GTSAC | 1 cut(s) | 512 |
| TseI | GCWGC | 1 cut(s) | 173 |
| Tsp45I | GTSAC | 1 cut(s) | 512 |
| TspDTI | ATGAA | 2 cut(s) | 377, 554 |
| TspRI | CASTG | 2 cut(s) | 372, 675 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 85 |
| VneI | GTGCAC | 1 cut(s) | 360 |
| VpaK11BI | GGWCC | 1 cut(s) | 12 |
| XceI | RCATGY | 2 cut(s) | 59, 405 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 672 |
| XmaJI | CCTAGG | 1 cut(s) | 632 |
| XmnI | GAANNNNTTC | 1 cut(s) | 545 |
| XspI | CTAG | 4 cut(s) | 150, 318, 557, 633 |
| ZrmI | AGTACT | 1 cut(s) | 202 |