ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 348 |
| Acc36I | ACCTGC | 2 cut(s) | 472, 1436 |
| AccB1I | GGYRCC | 1 cut(s) | 119 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1979 |
| AccBSI | CCGCTC | 1 cut(s) | 2132 |
| AccI | GTMKAC | 1 cut(s) | 1812 |
| AciI | CCGC | 3 cut(s) | 800, 2108, 2132 |
| AclI | AACGTT | 1 cut(s) | 135 |
| AclWI | GGATC | 4 cut(s) | 869, 1201, 1413, 2404 |
| AcoI | YGGCCR | 3 cut(s) | 220, 1026, 2041 |
| AcsI | RAATTY | 8 cut(s) | 52, 710, 809, 1418, 1516, 1730, 2241, 2507 |
| AcuI | CTGAAG | 2 cut(s) | 1978, 2570 |
| AdeI | CACNNNGTG | 1 cut(s) | 355 |
| AfaI | GTAC | 5 cut(s) | 230, 501, 1140, 1977, 1999 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1099, 1979, 2578 |
| AflIII | ACRYGT | 1 cut(s) | 1601 |
| AjnI | CCWGG | 3 cut(s) | 1107, 1978, 2347 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1508, 1540, 1697, 1729 |
| AleI | CACNNNNGTG | 1 cut(s) | 943 |
| Alw26I | GTCTC | 5 cut(s) | 146, 1068, 1501, 1592, 2451 |
| AlwI | GGATC | 4 cut(s) | 869, 1201, 1413, 2404 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1438, 1979 |
| AoxI | GGCC | 9 cut(s) | 34, 220, 625, 822, 1026, 1090, 1890, 2025, 2041 |
| ApeKI | GCWGC | 5 cut(s) | 893, 1213, 1679, 2135, 2166 |
| ApoI | RAATTY | 8 cut(s) | 52, 710, 809, 1418, 1516, 1730, 2241, 2507 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2321, 2353 |
| AseI | ATTAAT | 1 cut(s) | 540 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2241, 2300 |
| AspLEI | GCGC | 2 cut(s) | 349, 2600 |
| AspS9I | GGNCC | 2 cut(s) | 822, 2404 |
| AsuC2I | CCSGG | 1 cut(s) | 2522 |
| AsuHPI | GGTGA | 5 cut(s) | 199, 317, 1241, 2407, 2434 |
| AsuII | TTCGAA | 1 cut(s) | 420 |
| AsuNHI | GCTAGC | 1 cut(s) | 1675 |
| AvaII | GGWCC | 1 cut(s) | 2404 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2268, 2301 |
| BalI | TGGCCA | 2 cut(s) | 1028, 2043 |
| BanI | GGYRCC | 1 cut(s) | 119 |
| BbsI | GAAGAC | 1 cut(s) | 2253 |
| BbvI | GCAGC | 5 cut(s) | 905, 1200, 1691, 2122, 2178 |
| BccI | CCATC | 8 cut(s) | 248, 377, 511, 548, 653, 1345, 1798, 1901 |
| BceAI | ACGGC | 2 cut(s) | 235, 2352 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 986, 1020 |
| BciT130I | CCWGG | 3 cut(s) | 1109, 1980, 2349 |
| BclI | TGATCA | 2 cut(s) | 634, 843 |
| BcnI | CCSGG | 1 cut(s) | 2522 |
| BcoDI | GTCTC | 5 cut(s) | 146, 1068, 1501, 1592, 2451 |
| BfaI | CTAG | 4 cut(s) | 435, 477, 1676, 2627 |
| BfmI | CTRYAG | 3 cut(s) | 333, 1214, 2118 |
| BfuAI | ACCTGC | 2 cut(s) | 472, 1436 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 821 |
| BglII | AGATCT | 1 cut(s) | 1558 |
| BisI | GCNGC | 6 cut(s) | 894, 1214, 1680, 2133, 2136, 2167 |
| BlsI | GCNGC | 6 cut(s) | 895, 1215, 1681, 2134, 2137, 2168 |
| Bme1390I | CCNGG | 4 cut(s) | 1109, 1980, 2349, 2522 |
| Bme18I | GGWCC | 1 cut(s) | 2404 |
| BmgT120I | GGNCC | 2 cut(s) | 822, 2404 |
| BmiI | GGNNCC | 5 cut(s) | 121, 804, 823, 1971, 2405 |
| BmrFI | CCNGG | 4 cut(s) | 1109, 1980, 2349, 2522 |
| BmrI | ACTGGG | 1 cut(s) | 2410 |
| BmsI | GCATC | 8 cut(s) | 150, 421, 431, 1093, 1162, 1738, 1938, 2536 |
| BmtI | GCTAGC | 1 cut(s) | 1679 |
| BmuI | ACTGGG | 1 cut(s) | 2410 |
| BpiI | GAAGAC | 1 cut(s) | 2253 |
| BpmI | CTGGAG | 2 cut(s) | 2001, 2250 |
| Bpu14I | TTCGAA | 1 cut(s) | 420 |
| BpuEI | CTTGAG | 1 cut(s) | 455 |
| BpuMI | CCSGG | 1 cut(s) | 2522 |
| Bsa29I | ATCGAT | 1 cut(s) | 2074 |
| BsaBI | GATNNNNATC | 2 cut(s) | 81, 192 |
| BsaI | GGTCTC | 2 cut(s) | 146, 1068 |
| BsaJI | CCNNGG | 4 cut(s) | 825, 1107, 2028, 2347 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1099, 1979, 2578 |
| Bse118I | RCCGGY | 1 cut(s) | 815 |
| Bse1I | ACTGG | 5 cut(s) | 1090, 1478, 1539, 1973, 2405 |
| Bse3DI | GCAATG | 3 cut(s) | 2142, 2488, 2535 |
| Bse8I | GATNNNNATC | 2 cut(s) | 81, 192 |
| BseBI | CCWGG | 3 cut(s) | 1109, 1980, 2349 |
| BseCI | ATCGAT | 1 cut(s) | 2074 |
| BseDI | CCNNGG | 4 cut(s) | 825, 1107, 2028, 2347 |
| BseJI | GATNNNNATC | 2 cut(s) | 81, 192 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1099, 1979, 2578 |
| BseMI | GCAATG | 3 cut(s) | 2142, 2488, 2535 |
| BseMII | CTCAG | 3 cut(s) | 1038, 1269, 2069 |
| BseNI | ACTGG | 5 cut(s) | 1090, 1478, 1539, 1973, 2405 |
| BseRI | GAGGAG | 1 cut(s) | 1928 |
| BseXI | GCAGC | 5 cut(s) | 905, 1200, 1691, 2122, 2178 |
| BseYI | CCCAGC | 1 cut(s) | 1965 |
| BsgI | GTGCAG | 2 cut(s) | 91, 146 |
| BshFI | GGCC | 9 cut(s) | 36, 222, 627, 824, 1028, 1092, 1892, 2027, 2043 |
| BshNI | GGYRCC | 1 cut(s) | 119 |
| BshVI | ATCGAT | 1 cut(s) | 2074 |
| BsiSI | CCGG | 3 cut(s) | 117, 816, 2521 |
| BslFI | GGGAC | 1 cut(s) | 2417 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1099, 1979, 2578 |
| BsmAI | GTCTC | 5 cut(s) | 146, 1068, 1501, 1592, 2451 |
| BsmBI | CGTCTC | 1 cut(s) | 1501 |
| BsmFI | GGGAC | 1 cut(s) | 2417 |
| BsmI | GAATGC | 4 cut(s) | 883, 1215, 2164, 2369 |
| BsnI | GGCC | 9 cut(s) | 36, 222, 627, 824, 1028, 1092, 1892, 2027, 2043 |
| Bso31I | GGTCTC | 2 cut(s) | 146, 1068 |
| Bsp119I | TTCGAA | 1 cut(s) | 420 |
| Bsp19I | CCATGG | 1 cut(s) | 825 |
| BspACI | CCGC | 3 cut(s) | 800, 2108, 2132 |
| BspANI | GGCC | 9 cut(s) | 36, 222, 627, 824, 1028, 1092, 1892, 2027, 2043 |
| BspCNI | CTCAG | 3 cut(s) | 1039, 1270, 2068 |
| BspDI | ATCGAT | 1 cut(s) | 2074 |
| BspLI | GGNNCC | 5 cut(s) | 121, 804, 823, 1971, 2405 |
| BspMAI | CTGCAG | 3 cut(s) | 337, 1218, 2122 |
| BspMI | ACCTGC | 2 cut(s) | 472, 1436 |
| BspOI | GCTAGC | 1 cut(s) | 1679 |
| BspPI | GGATC | 4 cut(s) | 869, 1201, 1413, 2404 |
| BspT104I | TTCGAA | 1 cut(s) | 420 |
| BspT107I | GGYRCC | 1 cut(s) | 119 |
| BspTNI | GGTCTC | 2 cut(s) | 146, 1068 |
| BsrBI | CCGCTC | 1 cut(s) | 2132 |
| BsrDI | GCAATG | 3 cut(s) | 2142, 2488, 2535 |
| BsrFI | RCCGGY | 1 cut(s) | 815 |
| BsrI | ACTGG | 5 cut(s) | 1090, 1478, 1539, 1973, 2405 |
| BssAI | RCCGGY | 1 cut(s) | 815 |
| BssECI | CCNNGG | 4 cut(s) | 825, 1107, 2028, 2347 |
| BssNAI | GTATAC | 1 cut(s) | 1813 |
| BssT1I | CCWWGG | 2 cut(s) | 825, 2028 |
| Bst1107I | GTATAC | 1 cut(s) | 1813 |
| Bst2UI | CCWGG | 3 cut(s) | 1109, 1980, 2349 |
| Bst4CI | ACNGT | 9 cut(s) | 124, 571, 854, 1434, 1617, 1779, 2281, 2472, 2637 |
| Bst6I | CTCTTC | 4 cut(s) | 144, 384, 689, 2622 |
| BstBI | TTCGAA | 1 cut(s) | 420 |
| BstC8I | GCNNGC | 6 cut(s) | 106, 1218, 1677, 2025, 2164, 2644 |
| BstDEI | CTNAG | 6 cut(s) | 1047, 1278, 1365, 1688, 2055, 2359 |
| BstDSI | CCRYGG | 1 cut(s) | 825 |
| BstEII | GGTNACC | 1 cut(s) | 45 |
| BstHHI | GCGC | 2 cut(s) | 349, 2600 |
| BstMAI | GTCTC | 5 cut(s) | 146, 1068, 1501, 1592, 2451 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 431, 473, 821, 2144, 2364 |
| BstNI | CCWGG | 3 cut(s) | 1109, 1980, 2349 |
| BstNSI | RCATGY | 2 cut(s) | 1605, 2570 |
| BstPI | GGTNACC | 1 cut(s) | 45 |
| BstSCI | CCNGG | 4 cut(s) | 1107, 1978, 2347, 2520 |
| BstSFI | CTRYAG | 3 cut(s) | 333, 1214, 2118 |
| BstV1I | GCAGC | 5 cut(s) | 905, 1200, 1691, 2122, 2178 |
| BstV2I | GAAGAC | 1 cut(s) | 2253 |
| BstX2I | RGATCY | 2 cut(s) | 1193, 1558 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1546 |
| BstYI | RGATCY | 2 cut(s) | 1193, 1558 |
| BstZ17I | GTATAC | 1 cut(s) | 1813 |
| Bsu15I | ATCGAT | 1 cut(s) | 2074 |
| BsuRI | GGCC | 9 cut(s) | 36, 222, 627, 824, 1028, 1092, 1892, 2027, 2043 |
| BsuTUI | ATCGAT | 1 cut(s) | 2074 |
| BtgI | CCRYGG | 1 cut(s) | 825 |
| BtgZI | GCGATG | 2 cut(s) | 255, 454 |
| BtsI | GCAGTG | 1 cut(s) | 2154 |
| BtsIMutI | CAGTG | 6 cut(s) | 950, 1029, 1348, 1546, 1911, 2154 |
| BveI | ACCTGC | 2 cut(s) | 472, 1436 |
| Cac8I | GCNNGC | 6 cut(s) | 106, 1218, 1677, 2025, 2164, 2644 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1438, 1979 |
| CfoI | GCGC | 2 cut(s) | 349, 2600 |
| Cfr10I | RCCGGY | 1 cut(s) | 815 |
| Cfr13I | GGNCC | 2 cut(s) | 822, 2404 |
| ClaI | ATCGAT | 1 cut(s) | 2074 |
| CseI | GACGC | 2 cut(s) | 1518, 2247 |
| Csp6I | GTAC | 5 cut(s) | 229, 500, 1139, 1976, 1998 |
| CviAII | CATG | 9 cut(s) | 595, 826, 929, 1011, 1602, 1942, 2045, 2379, 2567 |
| CviQI | GTAC | 5 cut(s) | 229, 500, 1139, 1976, 1998 |
| DdeI | CTNAG | 6 cut(s) | 1047, 1278, 1365, 1688, 2055, 2359 |
| DraI | TTTAAA | 3 cut(s) | 31, 720, 1587 |
| DraIII | CACNNNGTG | 1 cut(s) | 355 |
| EaeI | YGGCCR | 3 cut(s) | 220, 1026, 2041 |
| Eam1104I | CTCTTC | 4 cut(s) | 144, 384, 689, 2622 |
| EarI | CTCTTC | 4 cut(s) | 144, 384, 689, 2622 |
| Eco130I | CCWWGG | 2 cut(s) | 825, 2028 |
| Eco147I | AGGCCT | 1 cut(s) | 2027 |
| Eco31I | GGTCTC | 2 cut(s) | 146, 1068 |
| Eco32I | GATATC | 1 cut(s) | 1379 |
| Eco47I | GGWCC | 1 cut(s) | 2404 |
| Eco57I | CTGAAG | 2 cut(s) | 1978, 2570 |
| Eco91I | GGTNACC | 1 cut(s) | 45 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2404 |
| EcoO65I | GGTNACC | 1 cut(s) | 45 |
| EcoRI | GAATTC | 1 cut(s) | 2241 |
| EcoRII | CCWGG | 3 cut(s) | 1107, 1978, 2347 |
| EcoRV | GATATC | 1 cut(s) | 1379 |
| EcoT14I | CCWWGG | 2 cut(s) | 825, 2028 |
| EcoT22I | ATGCAT | 1 cut(s) | 1753 |
| ErhI | CCWWGG | 2 cut(s) | 825, 2028 |
| Esp3I | CGTCTC | 1 cut(s) | 1501 |
| FaeI | CATG | 9 cut(s) | 598, 829, 932, 1014, 1605, 1945, 2048, 2382, 2570 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2168, 2200 |
| FaqI | GGGAC | 1 cut(s) | 2417 |
| FatI | CATG | 9 cut(s) | 594, 825, 928, 1010, 1601, 1941, 2044, 2378, 2566 |
| FauNDI | CATATG | 1 cut(s) | 1501 |
| FbaI | TGATCA | 2 cut(s) | 634, 843 |
| FblI | GTMKAC | 1 cut(s) | 1812 |
| Fnu4HI | GCNGC | 6 cut(s) | 894, 1214, 1680, 2133, 2136, 2167 |
| Fsp4HI | GCNGC | 6 cut(s) | 894, 1214, 1680, 2133, 2136, 2167 |
| FspAI | RTGCGCAY | 1 cut(s) | 348 |
| FspBI | CTAG | 4 cut(s) | 435, 477, 1676, 2627 |
| FspI | TGCGCA | 1 cut(s) | 348 |
| GlaI | GCGC | 2 cut(s) | 348, 2599 |
| GluI | GCNGC | 6 cut(s) | 894, 1214, 1680, 2133, 2136, 2167 |
| GsaI | CCCAGC | 1 cut(s) | 1969 |
| GsuI | CTGGAG | 2 cut(s) | 2001, 2250 |
| HaeIII | GGCC | 9 cut(s) | 36, 222, 627, 824, 1028, 1092, 1892, 2027, 2043 |
| HapII | CCGG | 3 cut(s) | 117, 816, 2521 |
| HgaI | GACGC | 2 cut(s) | 1518, 2247 |
| HhaI | GCGC | 2 cut(s) | 349, 2600 |
| Hin1II | CATG | 9 cut(s) | 598, 829, 932, 1014, 1605, 1945, 2048, 2382, 2570 |
| Hin6I | GCGC | 2 cut(s) | 347, 2598 |
| HinP1I | GCGC | 2 cut(s) | 347, 2598 |
| HincII | GTYRAC | 3 cut(s) | 325, 600, 1567 |
| HindII | GTYRAC | 3 cut(s) | 325, 600, 1567 |
| HindIII | AAGCTT | 2 cut(s) | 1767, 2356 |
| HpaII | CCGG | 3 cut(s) | 117, 816, 2521 |
| HphI | GGTGA | 5 cut(s) | 199, 317, 1241, 2407, 2434 |
| HpyAV | CCTTC | 7 cut(s) | 121, 1454, 1687, 2174, 2227, 2386, 2541 |
| HpyCH4III | ACNGT | 9 cut(s) | 124, 571, 854, 1434, 1617, 1779, 2281, 2472, 2637 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 1150, 1857, 2248 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 431, 473, 821, 2144, 2364 |
| HpyF3I | CTNAG | 6 cut(s) | 1047, 1278, 1365, 1688, 2055, 2359 |
| HpySE526I | ACGT | 4 cut(s) | 135, 1150, 1857, 2248 |
| Hsp92II | CATG | 9 cut(s) | 598, 829, 932, 1014, 1605, 1945, 2048, 2382, 2570 |
| HspAI | GCGC | 2 cut(s) | 347, 2598 |
| Ksp22I | TGATCA | 2 cut(s) | 634, 843 |
| LmnI | GCTCC | 1 cut(s) | 2608 |
| Lsp1109I | GCAGC | 5 cut(s) | 905, 1200, 1691, 2122, 2178 |
| LweI | GCATC | 8 cut(s) | 150, 421, 431, 1093, 1162, 1738, 1938, 2536 |
| MaeI | CTAG | 4 cut(s) | 435, 477, 1676, 2627 |
| MaeII | ACGT | 4 cut(s) | 135, 1150, 1857, 2248 |
| MbiI | CCGCTC | 1 cut(s) | 2132 |
| MfeI | CAATTG | 1 cut(s) | 915 |
| MflI | RGATCY | 2 cut(s) | 1193, 1558 |
| MlsI | TGGCCA | 2 cut(s) | 1028, 2043 |
| MluNI | TGGCCA | 2 cut(s) | 1028, 2043 |
| MlyI | GAGTC | 5 cut(s) | 321, 1996, 2198, 2337, 2539 |
| MmeI | TCCRAC | 1 cut(s) | 1299 |
| Mox20I | TGGCCA | 2 cut(s) | 1028, 2043 |
| Mph1103I | ATGCAT | 1 cut(s) | 1753 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2241, 2300 |
| MscI | TGGCCA | 2 cut(s) | 1028, 2043 |
| MslI | CAYNNNNRTG | 4 cut(s) | 943, 2147, 2383, 2540 |
| Msp20I | TGGCCA | 2 cut(s) | 1028, 2043 |
| MspI | CCGG | 3 cut(s) | 117, 816, 2521 |
| MspR9I | CCNGG | 4 cut(s) | 1109, 1980, 2349, 2522 |
| MunI | CAATTG | 1 cut(s) | 915 |
| Mva1269I | GAATGC | 4 cut(s) | 883, 1215, 2164, 2369 |
| MvaI | CCWGG | 3 cut(s) | 1109, 1980, 2349 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 431, 473, 821, 2144, 2364 |
| NciI | CCSGG | 1 cut(s) | 2522 |
| NcoI | CCATGG | 1 cut(s) | 825 |
| NdeI | CATATG | 1 cut(s) | 1501 |
| NheI | GCTAGC | 1 cut(s) | 1675 |
| NlaIII | CATG | 9 cut(s) | 598, 829, 932, 1014, 1605, 1945, 2048, 2382, 2570 |
| NlaIV | GGNNCC | 5 cut(s) | 121, 804, 823, 1971, 2405 |
| NmuCI | GTSAC | 3 cut(s) | 1779, 1988, 2190 |
| NsbI | TGCGCA | 1 cut(s) | 348 |
| NsiI | ATGCAT | 1 cut(s) | 1753 |
| NspI | RCATGY | 2 cut(s) | 1605, 2570 |
| NspV | TTCGAA | 1 cut(s) | 420 |
| OliI | CACNNNNGTG | 1 cut(s) | 943 |
| PceI | AGGCCT | 1 cut(s) | 2027 |
| PciI | ACATGT | 1 cut(s) | 1601 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 141, 1761, 2245 |
| PctI | GAATGC | 4 cut(s) | 883, 1215, 2164, 2369 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2241, 2300 |
| PfeI | GAWTC | 6 cut(s) | 480, 584, 1325, 1529, 1901, 2574 |
| PflFI | GACNNNGTC | 1 cut(s) | 571 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1979 |
| PkrI | GCNGC | 6 cut(s) | 895, 1215, 1681, 2134, 2137, 2168 |
| PleI | GAGTC | 5 cut(s) | 320, 1995, 2197, 2337, 2539 |
| PpsI | GAGTC | 5 cut(s) | 320, 1995, 2197, 2337, 2539 |
| PpuMI | RGGWCCY | 1 cut(s) | 2404 |
| PscI | ACATGT | 1 cut(s) | 1601 |
| PshBI | ATTAAT | 1 cut(s) | 540 |
| Psp1406I | AACGTT | 1 cut(s) | 135 |
| Psp5II | RGGWCCY | 1 cut(s) | 2404 |
| Psp6I | CCWGG | 3 cut(s) | 1107, 1978, 2347 |
| PspEI | GGTNACC | 1 cut(s) | 45 |
| PspFI | CCCAGC | 1 cut(s) | 1965 |
| PspGI | CCWGG | 3 cut(s) | 1107, 1978, 2347 |
| PspN4I | GGNNCC | 5 cut(s) | 121, 804, 823, 1971, 2405 |
| PspPI | GGNCC | 2 cut(s) | 822, 2404 |
| PspPPI | RGGWCCY | 1 cut(s) | 2404 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2229, 2261 |
| PstI | CTGCAG | 3 cut(s) | 337, 1218, 2122 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1438, 1979 |
| PsuI | RGATCY | 2 cut(s) | 1193, 1558 |
| PsyI | GACNNNGTC | 1 cut(s) | 571 |
| RsaI | GTAC | 5 cut(s) | 230, 501, 1140, 1977, 1999 |
| RsaNI | GTAC | 5 cut(s) | 229, 500, 1139, 1976, 1998 |
| RseI | CAYNNNNRTG | 4 cut(s) | 943, 2147, 2383, 2540 |
| SatI | GCNGC | 6 cut(s) | 894, 1214, 1680, 2133, 2136, 2167 |
| Sau96I | GGNCC | 2 cut(s) | 822, 2404 |
| SchI | GAGTC | 5 cut(s) | 321, 1996, 2198, 2337, 2539 |
| ScrFI | CCNGG | 4 cut(s) | 1109, 1980, 2349, 2522 |
| SfaNI | GCATC | 8 cut(s) | 150, 421, 431, 1093, 1162, 1738, 1938, 2536 |
| SfcI | CTRYAG | 3 cut(s) | 333, 1214, 2118 |
| SfuI | TTCGAA | 1 cut(s) | 420 |
| SinI | GGWCC | 1 cut(s) | 2404 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 943, 2147, 2383, 2540 |
| SmlI | CTYRAG | 1 cut(s) | 470 |
| SmoI | CTYRAG | 1 cut(s) | 470 |
| SseBI | AGGCCT | 1 cut(s) | 2027 |
| SsiI | CCGC | 3 cut(s) | 800, 2108, 2132 |
| SspI | AATATT | 2 cut(s) | 724, 1167 |
| SspMI | CTAG | 4 cut(s) | 435, 477, 1676, 2627 |
| StuI | AGGCCT | 1 cut(s) | 2027 |
| StyD4I | CCNGG | 4 cut(s) | 1107, 1978, 2347, 2520 |
| StyI | CCWWGG | 2 cut(s) | 825, 2028 |
| TaaI | ACNGT | 9 cut(s) | 124, 571, 854, 1434, 1617, 1779, 2281, 2472, 2637 |
| TaiI | ACGT | 4 cut(s) | 138, 1153, 1860, 2251 |
| TaqI | TCGA | 6 cut(s) | 420, 1170, 1635, 1684, 2074, 2320 |
| TatI | WGTACW | 1 cut(s) | 1997 |
| TauI | GCSGC | 1 cut(s) | 2135 |
| TfiI | GAWTC | 6 cut(s) | 480, 584, 1325, 1529, 1901, 2574 |
| TscAI | CASTG | 6 cut(s) | 950, 1036, 1348, 1546, 1911, 2154 |
| TseFI | GTSAC | 3 cut(s) | 1779, 1988, 2190 |
| TseI | GCWGC | 5 cut(s) | 893, 1213, 1679, 2135, 2166 |
| Tsp45I | GTSAC | 3 cut(s) | 1779, 1988, 2190 |
| TspRI | CASTG | 6 cut(s) | 950, 1036, 1348, 1546, 1911, 2154 |
| Tth111I | GACNNNGTC | 1 cut(s) | 571 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1979 |
| VpaK11BI | GGWCC | 1 cut(s) | 2404 |
| VspI | ATTAAT | 1 cut(s) | 540 |
| XapI | RAATTY | 8 cut(s) | 52, 710, 809, 1418, 1516, 1730, 2241, 2507 |
| XceI | RCATGY | 2 cut(s) | 1605, 2570 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 790 |
| XmiI | GTMKAC | 1 cut(s) | 1812 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2241, 2300 |
| XspI | CTAG | 4 cut(s) | 435, 477, 1676, 2627 |
| Zsp2I | ATGCAT | 1 cut(s) | 1753 |