Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 684 |
| Acc65I | GGTACC | 1 cut(s) | 7 |
| AccB1I | GGYRCC | 1 cut(s) | 7 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 976 |
| AccBSI | CCGCTC | 1 cut(s) | 505 |
| AciI | CCGC | 3 cut(s) | 309, 367, 503 |
| AclWI | GGATC | 2 cut(s) | 712, 725 |
| AcsI | RAATTY | 4 cut(s) | 136, 290, 471, 606 |
| AfaI | GTAC | 4 cut(s) | 9, 190, 324, 350 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 822, 976 |
| AflIII | ACRYGT | 1 cut(s) | 49 |
| AgsI | TTSAA | 3 cut(s) | 199, 296, 667 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 950, 982 |
| AleI | CACNNNNGTG | 1 cut(s) | 156 |
| AluBI | AGCT | 5 cut(s) | 74, 110, 491, 631, 1086 |
| AluI | AGCT | 5 cut(s) | 74, 110, 491, 631, 1086 |
| Alw26I | GTCTC | 2 cut(s) | 406, 1000 |
| AlwI | GGATC | 2 cut(s) | 712, 725 |
| Ama87I | CYCGRG | 1 cut(s) | 20 |
| AoxI | GGCC | 1 cut(s) | 225 |
| ApoI | RAATTY | 4 cut(s) | 136, 290, 471, 606 |
| Asp718I | GGTACC | 1 cut(s) | 7 |
| AspLEI | GCGC | 2 cut(s) | 60, 461 |
| AspS9I | GGNCC | 1 cut(s) | 982 |
| AsuHPI | GGTGA | 2 cut(s) | 801, 893 |
| AvaI | CYCGRG | 1 cut(s) | 20 |
| AvaII | GGWCC | 1 cut(s) | 982 |
| BaeGI | GKGCMC | 1 cut(s) | 936 |
| BamHI | GGATCC | 1 cut(s) | 717 |
| BanI | GGYRCC | 1 cut(s) | 7 |
| BbsI | GAAGAC | 1 cut(s) | 850 |
| BccI | CCATC | 3 cut(s) | 119, 705, 878 |
| BcoDI | GTCTC | 2 cut(s) | 406, 1000 |
| BfaI | CTAG | 5 cut(s) | 71, 105, 162, 305, 1089 |
| BfmI | CTRYAG | 1 cut(s) | 486 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 538 |
| BglII | AGATCT | 1 cut(s) | 101 |
| BisI | GCNGC | 2 cut(s) | 309, 503 |
| BlsI | GCNGC | 2 cut(s) | 310, 504 |
| Bme18I | GGWCC | 1 cut(s) | 982 |
| BmeT110I | CYCGRG | 1 cut(s) | 20 |
| BmgT120I | GGNCC | 1 cut(s) | 982 |
| BmiI | GGNNCC | 2 cut(s) | 9, 719 |
| BmrI | ACTGGG | 1 cut(s) | 930 |
| BmsI | GCATC | 1 cut(s) | 1009 |
| BmuI | ACTGGG | 1 cut(s) | 930 |
| BpiI | GAAGAC | 1 cut(s) | 850 |
| BpuEI | CTTGAG | 1 cut(s) | 876 |
| BsaJI | CCNNGG | 2 cut(s) | 316, 352 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 401, 431 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 822, 976 |
| Bse1I | ACTGG | 2 cut(s) | 868, 936 |
| Bse3DI | GCAATG | 5 cut(s) | 519, 553, 775, 1013, 1047 |
| BseDI | CCNNGG | 2 cut(s) | 316, 352 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 822, 976 |
| BseMI | GCAATG | 5 cut(s) | 519, 553, 775, 1013, 1047 |
| BseNI | ACTGG | 2 cut(s) | 868, 936 |
| BseSI | GKGCMC | 1 cut(s) | 936 |
| BshFI | GGCC | 1 cut(s) | 227 |
| BshNI | GGYRCC | 1 cut(s) | 7 |
| BsiHKCI | CYCGRG | 1 cut(s) | 20 |
| BslFI | GGGAC | 2 cut(s) | 54, 803 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 822, 976 |
| BsmAI | GTCTC | 2 cut(s) | 406, 1000 |
| BsmFI | GGGAC | 2 cut(s) | 54, 803 |
| BsmI | GAATGC | 1 cut(s) | 204 |
| BsnI | GGCC | 1 cut(s) | 227 |
| BsoBI | CYCGRG | 1 cut(s) | 20 |
| Bsp1286I | GDGCHC | 1 cut(s) | 936 |
| Bsp143I | GATC | 2 cut(s) | 101, 717 |
| BspACI | CCGC | 3 cut(s) | 309, 367, 503 |
| BspANI | GGCC | 1 cut(s) | 227 |
| BspLI | GGNNCC | 2 cut(s) | 9, 719 |
| BspPI | GGATC | 2 cut(s) | 712, 725 |
| BspQI | GCTCTTC | 1 cut(s) | 27 |
| BspT107I | GGYRCC | 1 cut(s) | 7 |
| BsrBI | CCGCTC | 1 cut(s) | 505 |
| BsrDI | GCAATG | 5 cut(s) | 519, 553, 775, 1013, 1047 |
| BsrI | ACTGG | 2 cut(s) | 868, 936 |
| BssECI | CCNNGG | 2 cut(s) | 316, 352 |
| BssMI | GATC | 2 cut(s) | 101, 717 |
| BssT1I | CCWWGG | 2 cut(s) | 316, 352 |
| Bst4CI | ACNGT | 2 cut(s) | 417, 521 |
| Bst6I | CTCTTC | 2 cut(s) | 27, 744 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 395 |
| BstC8I | GCNNGC | 2 cut(s) | 159, 699 |
| BstDEI | CTNAG | 1 cut(s) | 431 |
| BstHHI | GCGC | 2 cut(s) | 60, 461 |
| BstKTI | GATC | 2 cut(s) | 104, 720 |
| BstMAI | GTCTC | 2 cut(s) | 406, 1000 |
| BstMBI | GATC | 2 cut(s) | 101, 717 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 395, 538, 698, 857 |
| BstNSI | RCATGY | 1 cut(s) | 53 |
| BstSFI | CTRYAG | 1 cut(s) | 486 |
| BstSLI | GKGCMC | 1 cut(s) | 936 |
| BstV2I | GAAGAC | 1 cut(s) | 850 |
| BstX2I | RGATCY | 2 cut(s) | 101, 717 |
| BstYI | RGATCY | 2 cut(s) | 101, 717 |
| BsuRI | GGCC | 1 cut(s) | 227 |
| BtsIMutI | CAGTG | 2 cut(s) | 588, 875 |
| Cac8I | GCNNGC | 2 cut(s) | 159, 699 |
| CfoI | GCGC | 2 cut(s) | 60, 461 |
| Cfr13I | GGNCC | 1 cut(s) | 982 |
| CseI | GACGC | 1 cut(s) | 800 |
| Csp6I | GTAC | 4 cut(s) | 8, 189, 323, 349 |
| CviAII | CATG | 4 cut(s) | 50, 286, 341, 647 |
| CviQI | GTAC | 4 cut(s) | 8, 189, 323, 349 |
| DdeI | CTNAG | 1 cut(s) | 431 |
| DpnI | GATC | 2 cut(s) | 103, 719 |
| DpnII | GATC | 2 cut(s) | 101, 717 |
| Eam1104I | CTCTTC | 2 cut(s) | 27, 744 |
| EarI | CTCTTC | 2 cut(s) | 27, 744 |
| Eco130I | CCWWGG | 2 cut(s) | 316, 352 |
| Eco147I | AGGCCT | 1 cut(s) | 227 |
| Eco47I | GGWCC | 1 cut(s) | 982 |
| Eco88I | CYCGRG | 1 cut(s) | 20 |
| EcoO109I | RGGNCCY | 1 cut(s) | 982 |
| EcoRI | GAATTC | 2 cut(s) | 136, 606 |
| EcoT14I | CCWWGG | 2 cut(s) | 316, 352 |
| ErhI | CCWWGG | 2 cut(s) | 316, 352 |
| FaeI | CATG | 4 cut(s) | 53, 289, 344, 650 |
| FaqI | GGGAC | 2 cut(s) | 54, 803 |
| FatI | CATG | 4 cut(s) | 49, 285, 340, 646 |
| FauI | CCCGC | 1 cut(s) | 360 |
| Fnu4HI | GCNGC | 2 cut(s) | 309, 503 |
| Fsp4HI | GCNGC | 2 cut(s) | 309, 503 |
| FspBI | CTAG | 5 cut(s) | 71, 105, 162, 305, 1089 |
| GlaI | GCGC | 2 cut(s) | 59, 460 |
| GluI | GCNGC | 2 cut(s) | 309, 503 |
| HaeIII | GGCC | 1 cut(s) | 227 |
| HgaI | GACGC | 1 cut(s) | 800 |
| HhaI | GCGC | 2 cut(s) | 60, 461 |
| Hin1II | CATG | 4 cut(s) | 53, 289, 344, 650 |
| Hin6I | GCGC | 2 cut(s) | 58, 459 |
| HinP1I | GCGC | 2 cut(s) | 58, 459 |
| HincII | GTYRAC | 1 cut(s) | 283 |
| HindII | GTYRAC | 1 cut(s) | 283 |
| HinfI | GANTC | 4 cut(s) | 806, 864, 919, 1060 |
| HphI | GGTGA | 2 cut(s) | 801, 893 |
| Hpy166II | GTNNAC | 4 cut(s) | 244, 283, 334, 941 |
| Hpy188I | TCNGA | 1 cut(s) | 1018 |
| Hpy188III | TCNNGA | 3 cut(s) | 105, 231, 1094 |
| Hpy8I | GTNNAC | 4 cut(s) | 244, 283, 334, 941 |
| HpyAV | CCTTC | 3 cut(s) | 644, 822, 826 |
| HpyCH4III | ACNGT | 2 cut(s) | 417, 521 |
| HpyCH4V | TGCA | 5 cut(s) | 389, 398, 512, 546, 1052 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 395, 538, 698, 857 |
| HpyF3I | CTNAG | 1 cut(s) | 431 |
| Hsp92II | CATG | 4 cut(s) | 53, 289, 344, 650 |
| HspAI | GCGC | 2 cut(s) | 58, 459 |
| KpnI | GGTACC | 1 cut(s) | 11 |
| Kzo9I | GATC | 2 cut(s) | 101, 717 |
| LguI | GCTCTTC | 1 cut(s) | 27 |
| LpnPI | CCDG | 7 cut(s) | 23, 139, 447, 846, 881, 949, 988 |
| LweI | GCATC | 1 cut(s) | 1009 |
| MaeI | CTAG | 5 cut(s) | 71, 105, 162, 305, 1089 |
| MaeIII | GTNAC | 2 cut(s) | 66, 521 |
| MalI | GATC | 2 cut(s) | 103, 719 |
| MbiI | CCGCTC | 1 cut(s) | 505 |
| MboI | GATC | 2 cut(s) | 101, 717 |
| MboII | GAAGA | 5 cut(s) | 44, 731, 855, 886, 1069 |
| MfeI | CAATTG | 1 cut(s) | 560 |
| MflI | RGATCY | 2 cut(s) | 101, 717 |
| MhlI | GDGCHC | 1 cut(s) | 936 |
| MluCI | AATT | 9 cut(s) | 136, 214, 290, 384, 425, 471, 560, 606, 987 |
| MmeI | TCCRAC | 2 cut(s) | 416, 781 |
| MnlI | CCTC | 9 cut(s) | 87, 175, 238, 647, 708, 731, 741, 973, 1050 |
| MseI | TTAA | 2 cut(s) | 54, 945 |
| MslI | CAYNNNNRTG | 1 cut(s) | 156 |
| MunI | CAATTG | 1 cut(s) | 560 |
| Mva1269I | GAATGC | 1 cut(s) | 204 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 395, 538, 698, 857 |
| NdeII | GATC | 2 cut(s) | 101, 717 |
| NlaIII | CATG | 4 cut(s) | 53, 289, 344, 650 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 719 |
| NmeAIII | GCCGAG | 1 cut(s) | 727 |
| NspI | RCATGY | 1 cut(s) | 53 |
| OliI | CACNNNNGTG | 1 cut(s) | 156 |
| PceI | AGGCCT | 1 cut(s) | 227 |
| PciI | ACATGT | 1 cut(s) | 49 |
| PciSI | GCTCTTC | 1 cut(s) | 27 |
| PctI | GAATGC | 1 cut(s) | 204 |
| PfeI | GAWTC | 4 cut(s) | 806, 864, 919, 1060 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 976 |
| PkrI | GCNGC | 2 cut(s) | 310, 504 |
| PpuMI | RGGWCCY | 1 cut(s) | 982 |
| PscI | ACATGT | 1 cut(s) | 49 |
| PsiI | TTATAA | 1 cut(s) | 684 |
| Psp5II | RGGWCCY | 1 cut(s) | 982 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 719 |
| PspPI | GGNCC | 1 cut(s) | 982 |
| PspPPI | RGGWCCY | 1 cut(s) | 982 |
| PsuI | RGATCY | 2 cut(s) | 101, 717 |
| RsaI | GTAC | 4 cut(s) | 9, 190, 324, 350 |
| RsaNI | GTAC | 4 cut(s) | 8, 189, 323, 349 |
| RseI | CAYNNNNRTG | 1 cut(s) | 156 |
| SapI | GCTCTTC | 1 cut(s) | 27 |
| SaqAI | TTAA | 2 cut(s) | 54, 945 |
| SatI | GCNGC | 2 cut(s) | 309, 503 |
| Sau3AI | GATC | 2 cut(s) | 101, 717 |
| Sau96I | GGNCC | 1 cut(s) | 982 |
| SduI | GDGCHC | 1 cut(s) | 936 |
| SfaNI | GCATC | 1 cut(s) | 1009 |
| SfcI | CTRYAG | 1 cut(s) | 486 |
| SinI | GGWCC | 1 cut(s) | 982 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 156 |
| SmlI | CTYRAG | 1 cut(s) | 891 |
| SmoI | CTYRAG | 1 cut(s) | 891 |
| Sse9I | AATT | 9 cut(s) | 136, 214, 290, 384, 425, 471, 560, 606, 987 |
| SseBI | AGGCCT | 1 cut(s) | 227 |
| SsiI | CCGC | 3 cut(s) | 309, 367, 503 |
| SspI | AATATT | 2 cut(s) | 688, 767 |
| SspMI | CTAG | 5 cut(s) | 71, 105, 162, 305, 1089 |
| StuI | AGGCCT | 1 cut(s) | 227 |
| StyI | CCWWGG | 2 cut(s) | 316, 352 |
| TaaI | ACNGT | 2 cut(s) | 417, 521 |
| TaqI | TCGA | 2 cut(s) | 169, 232 |
| TasI | AATT | 9 cut(s) | 136, 214, 290, 384, 425, 471, 560, 606, 987 |
| TatI | WGTACW | 1 cut(s) | 188 |
| TauI | GCSGC | 2 cut(s) | 311, 505 |
| TfiI | GAWTC | 4 cut(s) | 806, 864, 919, 1060 |
| Tru1I | TTAA | 2 cut(s) | 54, 945 |
| Tru9I | TTAA | 2 cut(s) | 54, 945 |
| TscAI | CASTG | 2 cut(s) | 595, 875 |
| TspDTI | ATGAA | 8 cut(s) | 45, 149, 234, 302, 530, 545, 599, 663 |
| TspRI | CASTG | 2 cut(s) | 595, 875 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 976 |
| VpaK11BI | GGWCC | 1 cut(s) | 982 |
| XapI | RAATTY | 4 cut(s) | 136, 290, 471, 606 |
| XbaI | TCTAGA | 1 cut(s) | 104 |
| XceI | RCATGY | 1 cut(s) | 53 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 875 |
| XspI | CTAG | 5 cut(s) | 71, 105, 162, 305, 1089 |