Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 30 |
| Acc36I | ACCTGC | 1 cut(s) | 30 |
| AciI | CCGC | 2 cut(s) | 211, 517 |
| AclWI | GGATC | 1 cut(s) | 70 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 62, 585 |
| AflIII | ACRYGT | 1 cut(s) | 537 |
| AgsI | TTSAA | 3 cut(s) | 325, 535, 595 |
| AjnI | CCWGG | 1 cut(s) | 314 |
| AluBI | AGCT | 3 cut(s) | 150, 239, 397 |
| AluI | AGCT | 3 cut(s) | 150, 239, 397 |
| Alw21I | GWGCWC | 1 cut(s) | 241 |
| Alw26I | GTCTC | 5 cut(s) | 140, 465, 508, 520, 562 |
| AlwI | GGATC | 1 cut(s) | 70 |
| Ama87I | CYCGRG | 1 cut(s) | 585 |
| AoxI | GGCC | 2 cut(s) | 106, 588 |
| ApeKI | GCWGC | 1 cut(s) | 639 |
| AseI | ATTAAT | 1 cut(s) | 217 |
| AspS9I | GGNCC | 2 cut(s) | 403, 588 |
| AsuC2I | CCSGG | 2 cut(s) | 586, 587 |
| AsuHPI | GGTGA | 1 cut(s) | 58 |
| AvaI | CYCGRG | 1 cut(s) | 585 |
| AvaII | GGWCC | 1 cut(s) | 403 |
| BanII | GRGCYC | 1 cut(s) | 241 |
| Bbv12I | GWGCWC | 1 cut(s) | 241 |
| BbvI | GCAGC | 1 cut(s) | 626 |
| BccI | CCATC | 2 cut(s) | 29, 43 |
| BciT130I | CCWGG | 1 cut(s) | 316 |
| BciVI | GTATCC | 2 cut(s) | 77, 165 |
| BcnI | CCSGG | 2 cut(s) | 586, 587 |
| BcoDI | GTCTC | 5 cut(s) | 140, 465, 508, 520, 562 |
| BfaI | CTAG | 3 cut(s) | 89, 299, 371 |
| BfmI | CTRYAG | 1 cut(s) | 455 |
| BfuAI | ACCTGC | 1 cut(s) | 30 |
| BfuI | GTATCC | 2 cut(s) | 77, 165 |
| BglII | AGATCT | 2 cut(s) | 244, 301 |
| BisI | GCNGC | 1 cut(s) | 640 |
| BlsI | GCNGC | 1 cut(s) | 641 |
| Bme1390I | CCNGG | 3 cut(s) | 316, 586, 587 |
| Bme18I | GGWCC | 1 cut(s) | 403 |
| BmeT110I | CYCGRG | 1 cut(s) | 585 |
| BmgT120I | GGNCC | 2 cut(s) | 403, 588 |
| BmiI | GGNNCC | 1 cut(s) | 54 |
| BmrFI | CCNGG | 3 cut(s) | 316, 586, 587 |
| BmsI | GCATC | 3 cut(s) | 198, 267, 358 |
| Bpu10I | CCTNAGC | 1 cut(s) | 281 |
| BpuEI | CTTGAG | 1 cut(s) | 225 |
| BpuMI | CCSGG | 2 cut(s) | 586, 587 |
| BsaJI | CCNNGG | 2 cut(s) | 79, 585 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 62, 585 |
| BseBI | CCWGG | 1 cut(s) | 316 |
| BseDI | CCNNGG | 2 cut(s) | 79, 585 |
| BseGI | GGATG | 3 cut(s) | 124, 213, 505 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 62, 585 |
| BseMII | CTCAG | 1 cut(s) | 151 |
| BseRI | GAGGAG | 1 cut(s) | 45 |
| BseXI | GCAGC | 1 cut(s) | 626 |
| BshFI | GGCC | 2 cut(s) | 108, 590 |
| BsiHKAI | GWGCWC | 1 cut(s) | 241 |
| BsiHKCI | CYCGRG | 1 cut(s) | 585 |
| BsiSI | CCGG | 1 cut(s) | 586 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 62, 585 |
| BsmAI | GTCTC | 5 cut(s) | 140, 465, 508, 520, 562 |
| BsmBI | CGTCTC | 1 cut(s) | 520 |
| BsnI | GGCC | 2 cut(s) | 108, 590 |
| BsoBI | CYCGRG | 1 cut(s) | 585 |
| Bsp1286I | GDGCHC | 1 cut(s) | 241 |
| Bsp143I | GATC | 3 cut(s) | 75, 244, 301 |
| Bsp19I | CCATGG | 1 cut(s) | 79 |
| BspACI | CCGC | 2 cut(s) | 211, 517 |
| BspANI | GGCC | 2 cut(s) | 108, 590 |
| BspCNI | CTCAG | 1 cut(s) | 150 |
| BspLI | GGNNCC | 1 cut(s) | 54 |
| BspMI | ACCTGC | 1 cut(s) | 30 |
| BspPI | GGATC | 1 cut(s) | 70 |
| BspQI | GCTCTTC | 1 cut(s) | 447 |
| BssECI | CCNNGG | 2 cut(s) | 79, 585 |
| BssMI | GATC | 3 cut(s) | 75, 244, 301 |
| BssT1I | CCWWGG | 1 cut(s) | 79 |
| Bst2UI | CCWGG | 1 cut(s) | 316 |
| Bst4CI | ACNGT | 4 cut(s) | 183, 459, 467, 655 |
| Bst6I | CTCTTC | 2 cut(s) | 447, 511 |
| BstDEI | CTNAG | 2 cut(s) | 137, 281 |
| BstDSI | CCRYGG | 1 cut(s) | 79 |
| BstF5I | GGATG | 3 cut(s) | 124, 213, 505 |
| BstKTI | GATC | 3 cut(s) | 78, 247, 304 |
| BstMAI | GTCTC | 5 cut(s) | 140, 465, 508, 520, 562 |
| BstMBI | GATC | 3 cut(s) | 75, 244, 301 |
| BstNI | CCWGG | 1 cut(s) | 316 |
| BstNSI | RCATGY | 1 cut(s) | 541 |
| BstSCI | CCNGG | 3 cut(s) | 314, 584, 585 |
| BstSFI | CTRYAG | 1 cut(s) | 455 |
| BstV1I | GCAGC | 1 cut(s) | 626 |
| BstX2I | RGATCY | 3 cut(s) | 75, 244, 301 |
| BstYI | RGATCY | 3 cut(s) | 75, 244, 301 |
| BsuI | GTATCC | 2 cut(s) | 77, 165 |
| BsuRI | GGCC | 2 cut(s) | 108, 590 |
| BtgI | CCRYGG | 1 cut(s) | 79 |
| BtsCI | GGATG | 3 cut(s) | 124, 213, 505 |
| BtsIMutI | CAGTG | 1 cut(s) | 179 |
| BveI | ACCTGC | 1 cut(s) | 30 |
| Cfr13I | GGNCC | 2 cut(s) | 403, 588 |
| Cfr9I | CCCGGG | 1 cut(s) | 585 |
| CviAII | CATG | 2 cut(s) | 80, 538 |
| DdeI | CTNAG | 2 cut(s) | 137, 281 |
| DpnI | GATC | 3 cut(s) | 77, 246, 303 |
| DpnII | GATC | 3 cut(s) | 75, 244, 301 |
| Eam1104I | CTCTTC | 2 cut(s) | 447, 511 |
| EarI | CTCTTC | 2 cut(s) | 447, 511 |
| Ecl136II | GAGCTC | 1 cut(s) | 239 |
| Eco130I | CCWWGG | 1 cut(s) | 79 |
| Eco147I | AGGCCT | 1 cut(s) | 108 |
| Eco24I | GRGCYC | 1 cut(s) | 241 |
| Eco47I | GGWCC | 1 cut(s) | 403 |
| Eco53kI | GAGCTC | 1 cut(s) | 239 |
| Eco88I | CYCGRG | 1 cut(s) | 585 |
| EcoICRI | GAGCTC | 1 cut(s) | 239 |
| EcoRII | CCWGG | 1 cut(s) | 314 |
| EcoT14I | CCWWGG | 1 cut(s) | 79 |
| EcoT38I | GRGCYC | 1 cut(s) | 241 |
| ErhI | CCWWGG | 1 cut(s) | 79 |
| Esp3I | CGTCTC | 1 cut(s) | 520 |
| FaeI | CATG | 2 cut(s) | 83, 541 |
| FaiI | YATR | 7 cut(s) | 81, 311, 425, 512, 539, 576, 582 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 274, 306 |
| FatI | CATG | 2 cut(s) | 79, 537 |
| Fnu4HI | GCNGC | 1 cut(s) | 640 |
| FokI | GGATG | 3 cut(s) | 111, 220, 512 |
| FriOI | GRGCYC | 1 cut(s) | 241 |
| Fsp4HI | GCNGC | 1 cut(s) | 640 |
| FspBI | CTAG | 3 cut(s) | 89, 299, 371 |
| GluI | GCNGC | 1 cut(s) | 640 |
| HaeIII | GGCC | 2 cut(s) | 108, 590 |
| HapII | CCGG | 1 cut(s) | 586 |
| Hin1II | CATG | 2 cut(s) | 83, 541 |
| HinfI | GANTC | 3 cut(s) | 199, 287, 570 |
| HpaII | CCGG | 1 cut(s) | 586 |
| HphI | GGTGA | 1 cut(s) | 58 |
| Hpy188I | TCNGA | 3 cut(s) | 34, 65, 363 |
| Hpy188III | TCNNGA | 3 cut(s) | 242, 253, 406 |
| HpyAV | CCTTC | 2 cut(s) | 514, 589 |
| HpyCH4III | ACNGT | 4 cut(s) | 183, 459, 467, 655 |
| HpyCH4V | TGCA | 2 cut(s) | 349, 642 |
| HpyF3I | CTNAG | 2 cut(s) | 137, 281 |
| Hsp92II | CATG | 2 cut(s) | 83, 541 |
| Kzo9I | GATC | 3 cut(s) | 75, 244, 301 |
| LguI | GCTCTTC | 1 cut(s) | 447 |
| LmnI | GCTCC | 1 cut(s) | 58 |
| LpnPI | CCDG | 9 cut(s) | 25, 124, 266, 301, 328, 338, 353, 419, 599 |
| Lsp1109I | GCAGC | 1 cut(s) | 626 |
| LweI | GCATC | 3 cut(s) | 198, 267, 358 |
| MaeI | CTAG | 3 cut(s) | 89, 299, 371 |
| MaeIII | GTNAC | 2 cut(s) | 467, 649 |
| MalI | GATC | 3 cut(s) | 77, 246, 303 |
| MboI | GATC | 3 cut(s) | 75, 244, 301 |
| MboII | GAAGA | 4 cut(s) | 16, 434, 442, 498 |
| MflI | RGATCY | 3 cut(s) | 75, 244, 301 |
| MhlI | GDGCHC | 1 cut(s) | 241 |
| MluCI | AATT | 4 cut(s) | 152, 214, 218, 643 |
| MlyI | GAGTC | 3 cut(s) | 193, 296, 564 |
| MnlI | CCTC | 5 cut(s) | 17, 66, 138, 357, 489 |
| MseI | TTAA | 2 cut(s) | 185, 217 |
| MslI | CAYNNNNRTG | 1 cut(s) | 275 |
| MspI | CCGG | 1 cut(s) | 586 |
| MspR9I | CCNGG | 3 cut(s) | 316, 586, 587 |
| MvaI | CCWGG | 1 cut(s) | 316 |
| NciI | CCSGG | 2 cut(s) | 586, 587 |
| NcoI | CCATGG | 1 cut(s) | 79 |
| NdeII | GATC | 3 cut(s) | 75, 244, 301 |
| NlaIII | CATG | 2 cut(s) | 83, 541 |
| NlaIV | GGNNCC | 1 cut(s) | 54 |
| NspI | RCATGY | 1 cut(s) | 541 |
| PaqCI | CACCTGC | 1 cut(s) | 30 |
| PceI | AGGCCT | 1 cut(s) | 108 |
| PciI | ACATGT | 1 cut(s) | 537 |
| PciSI | GCTCTTC | 1 cut(s) | 447 |
| PkrI | GCNGC | 1 cut(s) | 641 |
| PleI | GAGTC | 3 cut(s) | 193, 295, 564 |
| PpsI | GAGTC | 3 cut(s) | 193, 295, 564 |
| PscI | ACATGT | 1 cut(s) | 537 |
| PshBI | ATTAAT | 1 cut(s) | 217 |
| Psp124BI | GAGCTC | 1 cut(s) | 241 |
| Psp6I | CCWGG | 1 cut(s) | 314 |
| PspGI | CCWGG | 1 cut(s) | 314 |
| PspN4I | GGNNCC | 1 cut(s) | 54 |
| PspPI | GGNCC | 2 cut(s) | 403, 588 |
| PsuI | RGATCY | 3 cut(s) | 75, 244, 301 |
| RseI | CAYNNNNRTG | 1 cut(s) | 275 |
| SacI | GAGCTC | 1 cut(s) | 241 |
| SapI | GCTCTTC | 1 cut(s) | 447 |
| SaqAI | TTAA | 2 cut(s) | 185, 217 |
| SatI | GCNGC | 1 cut(s) | 640 |
| Sau3AI | GATC | 3 cut(s) | 75, 244, 301 |
| Sau96I | GGNCC | 2 cut(s) | 403, 588 |
| SchI | GAGTC | 3 cut(s) | 193, 296, 564 |
| ScrFI | CCNGG | 3 cut(s) | 316, 586, 587 |
| SduI | GDGCHC | 1 cut(s) | 241 |
| SfaNI | GCATC | 3 cut(s) | 198, 267, 358 |
| SfcI | CTRYAG | 1 cut(s) | 455 |
| SinI | GGWCC | 1 cut(s) | 403 |
| SmaI | CCCGGG | 1 cut(s) | 587 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 275 |
| SmlI | CTYRAG | 1 cut(s) | 240 |
| SmoI | CTYRAG | 1 cut(s) | 240 |
| SrfI | GCCCGGGC | 1 cut(s) | 587 |
| Sse9I | AATT | 4 cut(s) | 152, 214, 218, 643 |
| SseBI | AGGCCT | 1 cut(s) | 108 |
| SsiI | CCGC | 2 cut(s) | 211, 517 |
| SspMI | CTAG | 3 cut(s) | 89, 299, 371 |
| SstI | GAGCTC | 1 cut(s) | 241 |
| StuI | AGGCCT | 1 cut(s) | 108 |
| StyD4I | CCNGG | 3 cut(s) | 314, 584, 585 |
| StyI | CCWWGG | 1 cut(s) | 79 |
| TaaI | ACNGT | 4 cut(s) | 183, 459, 467, 655 |
| TasI | AATT | 4 cut(s) | 152, 214, 218, 643 |
| Tru1I | TTAA | 2 cut(s) | 185, 217 |
| Tru9I | TTAA | 2 cut(s) | 185, 217 |
| TscAI | CASTG | 1 cut(s) | 186 |
| TseI | GCWGC | 1 cut(s) | 639 |
| TspDTI | ATGAA | 1 cut(s) | 412 |
| TspMI | CCCGGG | 1 cut(s) | 585 |
| TspRI | CASTG | 1 cut(s) | 186 |
| VpaK11BI | GGWCC | 1 cut(s) | 403 |
| VspI | ATTAAT | 1 cut(s) | 217 |
| XceI | RCATGY | 1 cut(s) | 541 |
| XmaI | CCCGGG | 1 cut(s) | 585 |
| XspI | CTAG | 3 cut(s) | 89, 299, 371 |