ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1084 |
| Acc36I | ACCTGC | 1 cut(s) | 1084 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 312 |
| AccBSI | CCGCTC | 1 cut(s) | 815 |
| AciI | CCGC | 2 cut(s) | 750, 815 |
| AclI | AACGTT | 1 cut(s) | 324 |
| AcsI | RAATTY | 1 cut(s) | 978 |
| AcuI | CTGAAG | 1 cut(s) | 1226 |
| AcyI | GRCGYC | 1 cut(s) | 269 |
| AfaI | GTAC | 4 cut(s) | 155, 209, 946, 1160 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 105, 312 |
| AgsI | TTSAA | 6 cut(s) | 250, 523, 553, 586, 977, 1165 |
| AjiI | CACGTC | 1 cut(s) | 401 |
| AjnI | CCWGG | 2 cut(s) | 380, 1151 |
| AluBI | AGCT | 5 cut(s) | 60, 459, 542, 800, 1038 |
| AluI | AGCT | 5 cut(s) | 60, 459, 542, 800, 1038 |
| Alw26I | GTCTC | 1 cut(s) | 1064 |
| AoxI | GGCC | 2 cut(s) | 508, 615 |
| ApaI | GGGCCC | 1 cut(s) | 512 |
| ApeKI | GCWGC | 1 cut(s) | 539 |
| ApoI | RAATTY | 1 cut(s) | 978 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 169, 201 |
| AseI | ATTAAT | 2 cut(s) | 789, 1197 |
| AspS9I | GGNCC | 6 cut(s) | 284, 303, 508, 509, 616, 1149 |
| AsuHPI | GGTGA | 2 cut(s) | 827, 1121 |
| AsuNHI | GCTAGC | 1 cut(s) | 1034 |
| AvaII | GGWCC | 3 cut(s) | 284, 303, 1149 |
| AxyI | CCTNAGG | 1 cut(s) | 290 |
| BaeGI | GKGCMC | 2 cut(s) | 512, 740 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 145, 178 |
| BanII | GRGCYC | 1 cut(s) | 512 |
| BbsI | GAAGAC | 2 cut(s) | 182, 812 |
| BbvCI | CCTCAGC | 1 cut(s) | 801 |
| BbvI | GCAGC | 1 cut(s) | 551 |
| BccI | CCATC | 3 cut(s) | 98, 656, 1217 |
| BciT130I | CCWGG | 2 cut(s) | 382, 1153 |
| BcoDI | GTCTC | 1 cut(s) | 1064 |
| BfaI | CTAG | 5 cut(s) | 57, 93, 456, 1035, 1267 |
| BfuAI | ACCTGC | 1 cut(s) | 1084 |
| BisI | GCNGC | 2 cut(s) | 540, 750 |
| BlpI | GCTNAGC | 1 cut(s) | 759 |
| BlsI | GCNGC | 2 cut(s) | 541, 751 |
| BmcAI | AGTACT | 1 cut(s) | 1160 |
| Bme1390I | CCNGG | 2 cut(s) | 382, 1153 |
| Bme18I | GGWCC | 3 cut(s) | 284, 303, 1149 |
| BmgBI | CACGTC | 1 cut(s) | 401 |
| BmgT120I | GGNCC | 6 cut(s) | 284, 303, 508, 509, 616, 1149 |
| BmiI | GGNNCC | 3 cut(s) | 286, 510, 1150 |
| BmrFI | CCNGG | 2 cut(s) | 382, 1153 |
| BmsI | GCATC | 1 cut(s) | 472 |
| BmtI | GCTAGC | 1 cut(s) | 1038 |
| BpiI | GAAGAC | 2 cut(s) | 182, 812 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 854, 886 |
| BpmI | CTGGAG | 1 cut(s) | 178 |
| Bpu10I | CCTNAGC | 1 cut(s) | 801 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 759 |
| BpuEI | CTTGAG | 1 cut(s) | 878 |
| BsaHI | GRCGYC | 1 cut(s) | 269 |
| BsaJI | CCNNGG | 1 cut(s) | 838 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 105, 312 |
| Bse1I | ACTGG | 2 cut(s) | 161, 745 |
| Bse21I | CCTNAGG | 1 cut(s) | 290 |
| Bse3DI | GCAATG | 2 cut(s) | 120, 141 |
| BseBI | CCWGG | 2 cut(s) | 382, 1153 |
| BseDI | CCNNGG | 1 cut(s) | 838 |
| BseGI | GGATG | 3 cut(s) | 424, 856, 1096 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 105, 312 |
| BseMI | GCAATG | 2 cut(s) | 120, 141 |
| BseMII | CTCAG | 3 cut(s) | 281, 792, 795 |
| BseNI | ACTGG | 2 cut(s) | 161, 745 |
| BseSI | GKGCMC | 2 cut(s) | 512, 740 |
| BseXI | GCAGC | 1 cut(s) | 551 |
| BseYI | CCCAGC | 1 cut(s) | 542 |
| BshFI | GGCC | 2 cut(s) | 510, 617 |
| BslFI | GGGAC | 2 cut(s) | 560, 1162 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 105, 312 |
| BsmAI | GTCTC | 1 cut(s) | 1064 |
| BsmFI | GGGAC | 2 cut(s) | 560, 1162 |
| BsmI | GAATGC | 1 cut(s) | 1171 |
| BsnI | GGCC | 2 cut(s) | 510, 617 |
| Bsp120I | GGGCCC | 1 cut(s) | 508 |
| Bsp1286I | GDGCHC | 2 cut(s) | 512, 740 |
| Bsp1407I | TGTACA | 1 cut(s) | 944 |
| Bsp143I | GATC | 1 cut(s) | 33 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 759 |
| BspACI | CCGC | 2 cut(s) | 750, 815 |
| BspANI | GGCC | 2 cut(s) | 510, 617 |
| BspCNI | CTCAG | 3 cut(s) | 282, 793, 794 |
| BspLI | GGNNCC | 3 cut(s) | 286, 510, 1150 |
| BspMI | ACCTGC | 1 cut(s) | 1084 |
| BspOI | GCTAGC | 1 cut(s) | 1038 |
| BsrBI | CCGCTC | 1 cut(s) | 815 |
| BsrDI | GCAATG | 2 cut(s) | 120, 141 |
| BsrGI | TGTACA | 1 cut(s) | 944 |
| BsrI | ACTGG | 2 cut(s) | 161, 745 |
| BssECI | CCNNGG | 1 cut(s) | 838 |
| BssMI | GATC | 1 cut(s) | 33 |
| BssNI | GRCGYC | 1 cut(s) | 269 |
| BssT1I | CCWWGG | 1 cut(s) | 838 |
| Bst2UI | CCWGG | 2 cut(s) | 382, 1153 |
| Bst4CI | ACNGT | 4 cut(s) | 12, 693, 995, 1252 |
| Bst6I | CTCTTC | 1 cut(s) | 897 |
| BstACI | GRCGYC | 1 cut(s) | 269 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1031 |
| BstAUI | TGTACA | 1 cut(s) | 944 |
| BstC8I | GCNNGC | 5 cut(s) | 318, 461, 774, 808, 1036 |
| BstDEI | CTNAG | 5 cut(s) | 290, 759, 781, 801, 1259 |
| BstF5I | GGATG | 3 cut(s) | 424, 856, 1096 |
| BstKTI | GATC | 1 cut(s) | 36 |
| BstMAI | GTCTC | 1 cut(s) | 1064 |
| BstMBI | GATC | 1 cut(s) | 33 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 66, 131, 755, 769, 782, 812, 1031 |
| BstNI | CCWGG | 2 cut(s) | 382, 1153 |
| BstNSI | RCATGY | 6 cut(s) | 320, 429, 467, 539, 776, 810 |
| BstSCI | CCNGG | 2 cut(s) | 380, 1151 |
| BstSLI | GKGCMC | 2 cut(s) | 512, 740 |
| BstV1I | GCAGC | 1 cut(s) | 551 |
| BstV2I | GAAGAC | 2 cut(s) | 182, 812 |
| Bsu36I | CCTNAGG | 1 cut(s) | 290 |
| BsuRI | GGCC | 2 cut(s) | 510, 617 |
| BtrI | CACGTC | 1 cut(s) | 401 |
| BtsCI | GGATG | 3 cut(s) | 424, 856, 1096 |
| BtsI | GCAGTG | 1 cut(s) | 129 |
| BtsIMutI | CAGTG | 3 cut(s) | 29, 129, 738 |
| BveI | ACCTGC | 1 cut(s) | 1084 |
| Cac8I | GCNNGC | 5 cut(s) | 318, 461, 774, 808, 1036 |
| Cfr13I | GGNCC | 6 cut(s) | 284, 303, 508, 509, 616, 1149 |
| CseI | GACGC | 2 cut(s) | 246, 258 |
| CsiI | ACCWGGT | 1 cut(s) | 380 |
| Csp6I | GTAC | 4 cut(s) | 154, 208, 945, 1159 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 501, 536 |
| CviAII | CATG | 9 cut(s) | 317, 365, 426, 464, 536, 613, 685, 773, 807 |
| CviQI | GTAC | 4 cut(s) | 154, 208, 945, 1159 |
| DdeI | CTNAG | 5 cut(s) | 290, 759, 781, 801, 1259 |
| DpnI | GATC | 1 cut(s) | 35 |
| DpnII | GATC | 1 cut(s) | 33 |
| DraI | TTTAAA | 1 cut(s) | 472 |
| Eam1104I | CTCTTC | 1 cut(s) | 897 |
| EarI | CTCTTC | 1 cut(s) | 897 |
| Eco130I | CCWWGG | 1 cut(s) | 838 |
| Eco24I | GRGCYC | 1 cut(s) | 512 |
| Eco47I | GGWCC | 3 cut(s) | 284, 303, 1149 |
| Eco57I | CTGAAG | 1 cut(s) | 1226 |
| Eco81I | CCTNAGG | 1 cut(s) | 290 |
| EcoO109I | RGGNCCY | 1 cut(s) | 284 |
| EcoRII | CCWGG | 2 cut(s) | 380, 1151 |
| EcoT14I | CCWWGG | 1 cut(s) | 838 |
| EcoT38I | GRGCYC | 1 cut(s) | 512 |
| ErhI | CCWWGG | 1 cut(s) | 838 |
| FaeI | CATG | 9 cut(s) | 320, 368, 429, 467, 539, 616, 688, 776, 810 |
| FaqI | GGGAC | 2 cut(s) | 560, 1162 |
| FatI | CATG | 9 cut(s) | 316, 364, 425, 463, 535, 612, 684, 772, 806 |
| FauI | CCCGC | 1 cut(s) | 808 |
| Fnu4HI | GCNGC | 2 cut(s) | 540, 750 |
| FokI | GGATG | 3 cut(s) | 431, 863, 1103 |
| FriOI | GRGCYC | 1 cut(s) | 512 |
| Fsp4HI | GCNGC | 2 cut(s) | 540, 750 |
| FspBI | CTAG | 5 cut(s) | 57, 93, 456, 1035, 1267 |
| GluI | GCNGC | 2 cut(s) | 540, 750 |
| GsaI | CCCAGC | 1 cut(s) | 546 |
| GsuI | CTGGAG | 1 cut(s) | 178 |
| HaeIII | GGCC | 2 cut(s) | 510, 617 |
| HgaI | GACGC | 2 cut(s) | 246, 258 |
| Hin1I | GRCGYC | 1 cut(s) | 269 |
| Hin1II | CATG | 9 cut(s) | 320, 368, 429, 467, 539, 616, 688, 776, 810 |
| HincII | GTYRAC | 1 cut(s) | 601 |
| HindII | GTYRAC | 1 cut(s) | 601 |
| HinfI | GANTC | 2 cut(s) | 452, 869 |
| HphI | GGTGA | 2 cut(s) | 827, 1121 |
| Hpy166II | GTNNAC | 6 cut(s) | 29, 210, 444, 601, 633, 1248 |
| Hpy188I | TCNGA | 6 cut(s) | 274, 725, 850, 882, 919, 961 |
| Hpy188III | TCNNGA | 3 cut(s) | 416, 895, 1088 |
| Hpy8I | GTNNAC | 6 cut(s) | 29, 210, 444, 601, 633, 1248 |
| Hpy99I | CGWCG | 3 cut(s) | 92, 268, 274 |
| HpyAV | CCTTC | 3 cut(s) | 32, 401, 887 |
| HpyCH4III | ACNGT | 4 cut(s) | 12, 693, 995, 1252 |
| HpyCH4IV | ACGT | 4 cut(s) | 87, 324, 400, 570 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 66, 131, 755, 769, 782, 812, 1031 |
| HpyF3I | CTNAG | 5 cut(s) | 290, 759, 781, 801, 1259 |
| HpySE526I | ACGT | 4 cut(s) | 87, 324, 400, 570 |
| Hsp92I | GRCGYC | 1 cut(s) | 269 |
| Hsp92II | CATG | 9 cut(s) | 320, 368, 429, 467, 539, 616, 688, 776, 810 |
| Kzo9I | GATC | 1 cut(s) | 33 |
| LmnI | GCTCC | 1 cut(s) | 274 |
| Lsp1109I | GCAGC | 1 cut(s) | 551 |
| LweI | GCATC | 1 cut(s) | 472 |
| MabI | ACCWGGT | 1 cut(s) | 380 |
| MaeI | CTAG | 5 cut(s) | 57, 93, 456, 1035, 1267 |
| MaeII | ACGT | 4 cut(s) | 87, 324, 400, 570 |
| MaeIII | GTNAC | 1 cut(s) | 1262 |
| MalI | GATC | 1 cut(s) | 35 |
| MbiI | CCGCTC | 1 cut(s) | 815 |
| MboI | GATC | 1 cut(s) | 33 |
| MboII | GAAGA | 8 cut(s) | 184, 187, 565, 598, 601, 812, 914, 1232 |
| MhlI | GDGCHC | 2 cut(s) | 512, 740 |
| MluCI | AATT | 7 cut(s) | 336, 518, 556, 910, 978, 1105, 1227 |
| MlyI | GAGTC | 1 cut(s) | 863 |
| MmeI | TCCRAC | 3 cut(s) | 252, 697, 828 |
| MnlI | CCTC | 9 cut(s) | 271, 275, 285, 495, 698, 796, 898, 913, 1139 |
| MseI | TTAA | 5 cut(s) | 339, 471, 789, 1188, 1197 |
| MslI | CAYNNNNRTG | 1 cut(s) | 134 |
| MspA1I | CMGCKG | 1 cut(s) | 542 |
| MspR9I | CCNGG | 2 cut(s) | 382, 1153 |
| Mva1269I | GAATGC | 1 cut(s) | 1171 |
| MvaI | CCWGG | 2 cut(s) | 382, 1153 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 66, 131, 755, 769, 782, 812, 1031 |
| NdeII | GATC | 1 cut(s) | 33 |
| NheI | GCTAGC | 1 cut(s) | 1034 |
| NlaIII | CATG | 9 cut(s) | 320, 368, 429, 467, 539, 616, 688, 776, 810 |
| NlaIV | GGNNCC | 3 cut(s) | 286, 510, 1150 |
| NspI | RCATGY | 6 cut(s) | 320, 429, 467, 539, 776, 810 |
| PaeI | GCATGC | 3 cut(s) | 320, 776, 810 |
| PaqCI | CACCTGC | 1 cut(s) | 1084 |
| PctI | GAATGC | 1 cut(s) | 1171 |
| PfeI | GAWTC | 1 cut(s) | 452 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 312 |
| PkrI | GCNGC | 2 cut(s) | 541, 751 |
| PleI | GAGTC | 1 cut(s) | 863 |
| PpsI | GAGTC | 1 cut(s) | 863 |
| PpuMI | RGGWCCY | 1 cut(s) | 284 |
| PshBI | ATTAAT | 2 cut(s) | 789, 1197 |
| Psp1406I | AACGTT | 1 cut(s) | 324 |
| Psp5II | RGGWCCY | 1 cut(s) | 284 |
| Psp6I | CCWGG | 2 cut(s) | 380, 1151 |
| PspFI | CCCAGC | 1 cut(s) | 542 |
| PspGI | CCWGG | 2 cut(s) | 380, 1151 |
| PspN4I | GGNNCC | 3 cut(s) | 286, 510, 1150 |
| PspOMI | GGGCCC | 1 cut(s) | 508 |
| PspPI | GGNCC | 6 cut(s) | 284, 303, 508, 509, 616, 1149 |
| PspPPI | RGGWCCY | 1 cut(s) | 284 |
| PvuII | CAGCTG | 1 cut(s) | 542 |
| RsaI | GTAC | 4 cut(s) | 155, 209, 946, 1160 |
| RsaNI | GTAC | 4 cut(s) | 154, 208, 945, 1159 |
| RseI | CAYNNNNRTG | 1 cut(s) | 134 |
| SaqAI | TTAA | 5 cut(s) | 339, 471, 789, 1188, 1197 |
| SatI | GCNGC | 2 cut(s) | 540, 750 |
| Sau3AI | GATC | 1 cut(s) | 33 |
| Sau96I | GGNCC | 6 cut(s) | 284, 303, 508, 509, 616, 1149 |
| ScaI | AGTACT | 1 cut(s) | 1160 |
| SchI | GAGTC | 1 cut(s) | 863 |
| ScrFI | CCNGG | 2 cut(s) | 382, 1153 |
| SduI | GDGCHC | 2 cut(s) | 512, 740 |
| SexAI | ACCWGGT | 1 cut(s) | 380 |
| SfaNI | GCATC | 1 cut(s) | 472 |
| SinI | GGWCC | 3 cut(s) | 284, 303, 1149 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 134 |
| SmlI | CTYRAG | 1 cut(s) | 893 |
| SmoI | CTYRAG | 1 cut(s) | 893 |
| SphI | GCATGC | 3 cut(s) | 320, 776, 810 |
| Sse9I | AATT | 7 cut(s) | 336, 518, 556, 910, 978, 1105, 1227 |
| SsiI | CCGC | 2 cut(s) | 750, 815 |
| SspI | AATATT | 1 cut(s) | 299 |
| SspMI | CTAG | 5 cut(s) | 57, 93, 456, 1035, 1267 |
| StyD4I | CCNGG | 2 cut(s) | 380, 1151 |
| StyI | CCWWGG | 1 cut(s) | 838 |
| TaaI | ACNGT | 4 cut(s) | 12, 693, 995, 1252 |
| TaiI | ACGT | 4 cut(s) | 90, 327, 403, 573 |
| TaqI | TCGA | 2 cut(s) | 36, 982 |
| TasI | AATT | 7 cut(s) | 336, 518, 556, 910, 978, 1105, 1227 |
| TatI | WGTACW | 2 cut(s) | 944, 1158 |
| TauI | GCSGC | 1 cut(s) | 752 |
| TfiI | GAWTC | 1 cut(s) | 452 |
| Tru1I | TTAA | 5 cut(s) | 339, 471, 789, 1188, 1197 |
| Tru9I | TTAA | 5 cut(s) | 339, 471, 789, 1188, 1197 |
| TscAI | CASTG | 3 cut(s) | 36, 136, 745 |
| TseI | GCWGC | 1 cut(s) | 539 |
| TspDTI | ATGAA | 2 cut(s) | 465, 601 |
| TspRI | CASTG | 3 cut(s) | 36, 136, 745 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 312 |
| VpaK11BI | GGWCC | 3 cut(s) | 284, 303, 1149 |
| VspI | ATTAAT | 2 cut(s) | 789, 1197 |
| XapI | RAATTY | 1 cut(s) | 978 |
| XceI | RCATGY | 6 cut(s) | 320, 429, 467, 539, 776, 810 |
| XspI | CTAG | 5 cut(s) | 57, 93, 456, 1035, 1267 |
| ZrmI | AGTACT | 1 cut(s) | 1160 |