Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 4 - 92 | 9.1e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 189 |
| AcsI | RAATTY | 1 cut(s) | 151 |
| AfaI | GTAC | 1 cut(s) | 352 |
| AflIII | ACRYGT | 1 cut(s) | 28 |
| AgsI | TTSAA | 3 cut(s) | 35, 121, 326 |
| AluBI | AGCT | 2 cut(s) | 145, 251 |
| AluI | AGCT | 2 cut(s) | 145, 251 |
| Alw26I | GTCTC | 1 cut(s) | 95 |
| AlwI | GGATC | 1 cut(s) | 189 |
| ApeKI | GCWGC | 4 cut(s) | 145, 251, 266, 275 |
| ApoI | RAATTY | 1 cut(s) | 151 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 94, 126 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| BauI | CACGAG | 1 cut(s) | 9 |
| BbvI | GCAGC | 4 cut(s) | 132, 238, 262, 278 |
| BccI | CCATC | 1 cut(s) | 322 |
| BcoDI | GTCTC | 1 cut(s) | 95 |
| BfaI | CTAG | 2 cut(s) | 191, 231 |
| BfmI | CTRYAG | 1 cut(s) | 146 |
| BisI | GCNGC | 4 cut(s) | 146, 252, 267, 276 |
| BlsI | GCNGC | 4 cut(s) | 147, 253, 268, 277 |
| BmsI | GCATC | 2 cut(s) | 190, 217 |
| Bse3DI | GCAATG | 1 cut(s) | 39 |
| BseMI | GCAATG | 1 cut(s) | 39 |
| BseMII | CTCAG | 2 cut(s) | 199, 270 |
| BseRI | GAGGAG | 1 cut(s) | 155 |
| BseXI | GCAGC | 4 cut(s) | 132, 238, 262, 278 |
| BsgI | GTGCAG | 1 cut(s) | 237 |
| BsmAI | GTCTC | 1 cut(s) | 95 |
| Bsp1407I | TGTACA | 1 cut(s) | 350 |
| Bsp143I | GATC | 1 cut(s) | 181 |
| BspCNI | CTCAG | 2 cut(s) | 198, 271 |
| BspMAI | CTGCAG | 1 cut(s) | 150 |
| BspPI | GGATC | 1 cut(s) | 189 |
| BsrDI | GCAATG | 1 cut(s) | 39 |
| BsrGI | TGTACA | 1 cut(s) | 350 |
| BssMI | GATC | 1 cut(s) | 181 |
| BssSI | CACGAG | 1 cut(s) | 9 |
| Bst2BI | CACGAG | 1 cut(s) | 9 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 272 |
| BstAUI | TGTACA | 1 cut(s) | 350 |
| BstC8I | GCNNGC | 1 cut(s) | 264 |
| BstDEI | CTNAG | 2 cut(s) | 185, 279 |
| BstKTI | GATC | 1 cut(s) | 184 |
| BstMAI | GTCTC | 1 cut(s) | 95 |
| BstMBI | GATC | 1 cut(s) | 181 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 248, 272, 275 |
| BstNSI | RCATGY | 1 cut(s) | 32 |
| BstSFI | CTRYAG | 1 cut(s) | 146 |
| BstV1I | GCAGC | 4 cut(s) | 132, 238, 262, 278 |
| BstX2I | RGATCY | 1 cut(s) | 181 |
| BstYI | RGATCY | 1 cut(s) | 181 |
| BtsI | GCAGTG | 1 cut(s) | 63 |
| BtsIMutI | CAGTG | 1 cut(s) | 63 |
| Cac8I | GCNNGC | 1 cut(s) | 264 |
| Csp6I | GTAC | 1 cut(s) | 351 |
| CviAII | CATG | 3 cut(s) | 29, 77, 227 |
| CviJI | RGCY | 3 cut(s) | 145, 242, 251 |
| CviKI_1 | RGCY | 3 cut(s) | 145, 242, 251 |
| CviQI | GTAC | 1 cut(s) | 351 |
| DdeI | CTNAG | 2 cut(s) | 185, 279 |
| DpnI | GATC | 1 cut(s) | 183 |
| DpnII | GATC | 1 cut(s) | 181 |
| EcoRI | GAATTC | 1 cut(s) | 151 |
| FaeI | CATG | 3 cut(s) | 32, 80, 230 |
| FaiI | YATR | 8 cut(s) | 30, 66, 78, 175, 177, 228, 258, 260 |
| FatI | CATG | 3 cut(s) | 28, 76, 226 |
| FauNDI | CATATG | 1 cut(s) | 258 |
| Fnu4HI | GCNGC | 4 cut(s) | 146, 252, 267, 276 |
| Fsp4HI | GCNGC | 4 cut(s) | 146, 252, 267, 276 |
| FspBI | CTAG | 2 cut(s) | 191, 231 |
| GluI | GCNGC | 4 cut(s) | 146, 252, 267, 276 |
| Hin1II | CATG | 3 cut(s) | 32, 80, 230 |
| HinfI | GANTC | 3 cut(s) | 7, 281, 338 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy166II | GTNNAC | 1 cut(s) | 353 |
| Hpy188I | TCNGA | 4 cut(s) | 188, 219, 286, 343 |
| Hpy188III | TCNNGA | 2 cut(s) | 137, 326 |
| Hpy8I | GTNNAC | 1 cut(s) | 353 |
| HpyAV | CCTTC | 2 cut(s) | 162, 228 |
| HpyCH4V | TGCA | 3 cut(s) | 148, 203, 254 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 248, 272, 275 |
| HpyF3I | CTNAG | 2 cut(s) | 185, 279 |
| Hsp92II | CATG | 3 cut(s) | 32, 80, 230 |
| Kzo9I | GATC | 1 cut(s) | 181 |
| LmnI | GCTCC | 1 cut(s) | 142 |
| LpnPI | CCDG | 2 cut(s) | 189, 248 |
| Lsp1109I | GCAGC | 4 cut(s) | 132, 238, 262, 278 |
| LweI | GCATC | 2 cut(s) | 190, 217 |
| MaeI | CTAG | 2 cut(s) | 191, 231 |
| MaeIII | GTNAC | 1 cut(s) | 4 |
| MalI | GATC | 1 cut(s) | 183 |
| MboI | GATC | 1 cut(s) | 181 |
| MboII | GAAGA | 1 cut(s) | 147 |
| MfeI | CAATTG | 1 cut(s) | 128 |
| MflI | RGATCY | 1 cut(s) | 181 |
| MluCI | AATT | 4 cut(s) | 61, 128, 151, 333 |
| MlyI | GAGTC | 1 cut(s) | 290 |
| MmeI | TCCRAC | 1 cut(s) | 78 |
| MnlI | CCTC | 4 cut(s) | 46, 133, 172, 232 |
| MseI | TTAA | 1 cut(s) | 358 |
| MspA1I | CMGCKG | 1 cut(s) | 251 |
| MunI | CAATTG | 1 cut(s) | 128 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 248, 272, 275 |
| NdeI | CATATG | 1 cut(s) | 258 |
| NdeII | GATC | 1 cut(s) | 181 |
| NlaIII | CATG | 3 cut(s) | 32, 80, 230 |
| NmuCI | GTSAC | 1 cut(s) | 4 |
| NspI | RCATGY | 1 cut(s) | 32 |
| PciI | ACATGT | 1 cut(s) | 28 |
| PfeI | GAWTC | 1 cut(s) | 338 |
| PkrI | GCNGC | 4 cut(s) | 147, 253, 268, 277 |
| PleI | GAGTC | 1 cut(s) | 289 |
| PpsI | GAGTC | 1 cut(s) | 289 |
| PscI | ACATGT | 1 cut(s) | 28 |
| PstI | CTGCAG | 1 cut(s) | 150 |
| PsuI | RGATCY | 1 cut(s) | 181 |
| PvuII | CAGCTG | 1 cut(s) | 251 |
| RsaI | GTAC | 1 cut(s) | 352 |
| RsaNI | GTAC | 1 cut(s) | 351 |
| SaqAI | TTAA | 1 cut(s) | 358 |
| SatI | GCNGC | 4 cut(s) | 146, 252, 267, 276 |
| Sau3AI | GATC | 1 cut(s) | 181 |
| SchI | GAGTC | 1 cut(s) | 290 |
| SetI | ASST | 4 cut(s) | 147, 173, 253, 358 |
| SfaNI | GCATC | 2 cut(s) | 190, 217 |
| SfcI | CTRYAG | 1 cut(s) | 146 |
| Sse9I | AATT | 4 cut(s) | 61, 128, 151, 333 |
| SspI | AATATT | 1 cut(s) | 93 |
| SspMI | CTAG | 2 cut(s) | 191, 231 |
| TasI | AATT | 4 cut(s) | 61, 128, 151, 333 |
| TatI | WGTACW | 1 cut(s) | 350 |
| TfiI | GAWTC | 1 cut(s) | 338 |
| Tru1I | TTAA | 1 cut(s) | 358 |
| Tru9I | TTAA | 1 cut(s) | 358 |
| TscAI | CASTG | 1 cut(s) | 63 |
| TseFI | GTSAC | 1 cut(s) | 4 |
| TseI | GCWGC | 4 cut(s) | 145, 251, 266, 275 |
| Tsp45I | GTSAC | 1 cut(s) | 4 |
| TspDTI | ATGAA | 1 cut(s) | 215 |
| TspRI | CASTG | 1 cut(s) | 63 |
| XapI | RAATTY | 1 cut(s) | 151 |
| XceI | RCATGY | 1 cut(s) | 32 |
| XspI | CTAG | 2 cut(s) | 191, 231 |