Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 204 |
| AciI | CCGC | 3 cut(s) | 245, 249, 296 |
| AgsI | TTSAA | 2 cut(s) | 104, 128 |
| AjnI | CCWGG | 1 cut(s) | 278 |
| AluBI | AGCT | 4 cut(s) | 47, 59, 85, 131 |
| AluI | AGCT | 4 cut(s) | 47, 59, 85, 131 |
| Alw26I | GTCTC | 1 cut(s) | 269 |
| AoxI | GGCC | 4 cut(s) | 39, 165, 181, 188 |
| ApaI | GGGCCC | 1 cut(s) | 169 |
| ApeKI | GCWGC | 2 cut(s) | 47, 56 |
| AspLEI | GCGC | 1 cut(s) | 206 |
| AspS9I | GGNCC | 3 cut(s) | 165, 166, 189 |
| AsuHPI | GGTGA | 3 cut(s) | 15, 155, 324 |
| AsuNHI | GCTAGC | 1 cut(s) | 314 |
| AxyI | CCTNAGG | 1 cut(s) | 185 |
| BaeGI | GKGCMC | 1 cut(s) | 169 |
| BanII | GRGCYC | 1 cut(s) | 169 |
| BbvI | GCAGC | 2 cut(s) | 34, 68 |
| BccI | CCATC | 2 cut(s) | 260, 296 |
| BceAI | ACGGC | 1 cut(s) | 203 |
| BciT130I | CCWGG | 1 cut(s) | 280 |
| BcoDI | GTCTC | 1 cut(s) | 269 |
| BfaI | CTAG | 2 cut(s) | 51, 315 |
| BfmI | CTRYAG | 1 cut(s) | 116 |
| BisI | GCNGC | 4 cut(s) | 48, 57, 245, 296 |
| BlsI | GCNGC | 4 cut(s) | 49, 58, 246, 297 |
| Bme1390I | CCNGG | 1 cut(s) | 280 |
| BmgT120I | GGNCC | 3 cut(s) | 165, 166, 189 |
| BmiI | GGNNCC | 1 cut(s) | 167 |
| BmrFI | CCNGG | 1 cut(s) | 280 |
| BmtI | GCTAGC | 1 cut(s) | 318 |
| BsaI | GGTCTC | 1 cut(s) | 269 |
| BsaJI | CCNNGG | 2 cut(s) | 161, 279 |
| Bse118I | RCCGGY | 1 cut(s) | 140 |
| Bse1I | ACTGG | 1 cut(s) | 26 |
| Bse21I | CCTNAGG | 1 cut(s) | 185 |
| BseBI | CCWGG | 1 cut(s) | 280 |
| BseDI | CCNNGG | 2 cut(s) | 161, 279 |
| BseMII | CTCAG | 1 cut(s) | 228 |
| BseNI | ACTGG | 1 cut(s) | 26 |
| BseRI | GAGGAG | 1 cut(s) | 161 |
| BseSI | GKGCMC | 1 cut(s) | 169 |
| BseXI | GCAGC | 2 cut(s) | 34, 68 |
| BseYI | CCCAGC | 1 cut(s) | 214 |
| BsgI | GTGCAG | 1 cut(s) | 95 |
| Bsh1236I | CGCG | 1 cut(s) | 204 |
| BshFI | GGCC | 4 cut(s) | 41, 167, 183, 190 |
| BsiSI | CCGG | 1 cut(s) | 141 |
| BsmAI | GTCTC | 1 cut(s) | 269 |
| BsnI | GGCC | 4 cut(s) | 41, 167, 183, 190 |
| Bso31I | GGTCTC | 1 cut(s) | 269 |
| Bsp120I | GGGCCC | 1 cut(s) | 165 |
| Bsp1286I | GDGCHC | 1 cut(s) | 169 |
| Bsp143I | GATC | 3 cut(s) | 93, 120, 339 |
| BspACI | CCGC | 3 cut(s) | 245, 249, 296 |
| BspANI | GGCC | 4 cut(s) | 41, 167, 183, 190 |
| BspCNI | CTCAG | 1 cut(s) | 229 |
| BspFNI | CGCG | 1 cut(s) | 204 |
| BspLI | GGNNCC | 1 cut(s) | 167 |
| BspOI | GCTAGC | 1 cut(s) | 318 |
| BspQI | GCTCTTC | 1 cut(s) | 238 |
| BspTNI | GGTCTC | 1 cut(s) | 269 |
| BsrFI | RCCGGY | 1 cut(s) | 140 |
| BsrI | ACTGG | 1 cut(s) | 26 |
| BssAI | RCCGGY | 1 cut(s) | 140 |
| BssECI | CCNNGG | 2 cut(s) | 161, 279 |
| BssMI | GATC | 3 cut(s) | 93, 120, 339 |
| BssT1I | CCWWGG | 1 cut(s) | 161 |
| Bst2UI | CCWGG | 1 cut(s) | 280 |
| Bst6I | CTCTTC | 1 cut(s) | 238 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 62 |
| BstC8I | GCNNGC | 2 cut(s) | 249, 316 |
| BstDEI | CTNAG | 2 cut(s) | 185, 237 |
| BstFNI | CGCG | 1 cut(s) | 204 |
| BstHHI | GCGC | 1 cut(s) | 206 |
| BstKTI | GATC | 3 cut(s) | 96, 123, 342 |
| BstMAI | GTCTC | 1 cut(s) | 269 |
| BstMBI | GATC | 3 cut(s) | 93, 120, 339 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 47, 53, 56, 62, 82, 137 |
| BstNI | CCWGG | 1 cut(s) | 280 |
| BstNSI | RCATGY | 1 cut(s) | 8 |
| BstSCI | CCNGG | 1 cut(s) | 278 |
| BstSFI | CTRYAG | 1 cut(s) | 116 |
| BstSLI | GKGCMC | 1 cut(s) | 169 |
| BstUI | CGCG | 1 cut(s) | 204 |
| BstV1I | GCAGC | 2 cut(s) | 34, 68 |
| Bsu36I | CCTNAGG | 1 cut(s) | 185 |
| BsuRI | GGCC | 4 cut(s) | 41, 167, 183, 190 |
| BtgZI | GCGATG | 1 cut(s) | 238 |
| Cac8I | GCNNGC | 2 cut(s) | 249, 316 |
| CfoI | GCGC | 1 cut(s) | 206 |
| Cfr10I | RCCGGY | 1 cut(s) | 140 |
| Cfr13I | GGNCC | 3 cut(s) | 165, 166, 189 |
| CviAII | CATG | 1 cut(s) | 5 |
| DdeI | CTNAG | 2 cut(s) | 185, 237 |
| DpnI | GATC | 3 cut(s) | 95, 122, 341 |
| DpnII | GATC | 3 cut(s) | 93, 120, 339 |
| Eam1104I | CTCTTC | 1 cut(s) | 238 |
| EarI | CTCTTC | 1 cut(s) | 238 |
| Eco130I | CCWWGG | 1 cut(s) | 161 |
| Eco147I | AGGCCT | 1 cut(s) | 183 |
| Eco24I | GRGCYC | 1 cut(s) | 169 |
| Eco31I | GGTCTC | 1 cut(s) | 269 |
| Eco81I | CCTNAGG | 1 cut(s) | 185 |
| EcoRII | CCWGG | 1 cut(s) | 278 |
| EcoT14I | CCWWGG | 1 cut(s) | 161 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 169 |
| ErhI | CCWWGG | 1 cut(s) | 161 |
| FaeI | CATG | 1 cut(s) | 8 |
| FaiI | YATR | 1 cut(s) | 6 |
| FatI | CATG | 1 cut(s) | 4 |
| FauI | CCCGC | 1 cut(s) | 256 |
| Fnu4HI | GCNGC | 4 cut(s) | 48, 57, 245, 296 |
| FriOI | GRGCYC | 1 cut(s) | 169 |
| Fsp4HI | GCNGC | 4 cut(s) | 48, 57, 245, 296 |
| FspBI | CTAG | 2 cut(s) | 51, 315 |
| GlaI | GCGC | 1 cut(s) | 205 |
| GluI | GCNGC | 4 cut(s) | 48, 57, 245, 296 |
| GsaI | CCCAGC | 1 cut(s) | 218 |
| HaeIII | GGCC | 4 cut(s) | 41, 167, 183, 190 |
| HapII | CCGG | 1 cut(s) | 141 |
| HhaI | GCGC | 1 cut(s) | 206 |
| Hin1II | CATG | 1 cut(s) | 8 |
| Hin6I | GCGC | 1 cut(s) | 204 |
| HinP1I | GCGC | 1 cut(s) | 204 |
| HinfI | GANTC | 1 cut(s) | 224 |
| HpaII | CCGG | 1 cut(s) | 141 |
| HphI | GGTGA | 3 cut(s) | 15, 155, 324 |
| Hpy188I | TCNGA | 3 cut(s) | 93, 238, 344 |
| Hpy99I | CGWCG | 1 cut(s) | 224 |
| HpyAV | CCTTC | 1 cut(s) | 98 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 76, 328 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 47, 53, 56, 62, 82, 137 |
| HpyF3I | CTNAG | 2 cut(s) | 185, 237 |
| Hsp92II | CATG | 1 cut(s) | 8 |
| HspAI | GCGC | 1 cut(s) | 204 |
| Kzo9I | GATC | 3 cut(s) | 93, 120, 339 |
| LguI | GCTCTTC | 1 cut(s) | 238 |
| Lsp1109I | GCAGC | 2 cut(s) | 34, 68 |
| MaeI | CTAG | 2 cut(s) | 51, 315 |
| MaeIII | GTNAC | 1 cut(s) | 13 |
| MalI | GATC | 3 cut(s) | 95, 122, 341 |
| MboI | GATC | 3 cut(s) | 93, 120, 339 |
| MboII | GAAGA | 1 cut(s) | 225 |
| MhlI | GDGCHC | 1 cut(s) | 169 |
| MluCI | AATT | 1 cut(s) | 33 |
| MnlI | CCTC | 5 cut(s) | 31, 139, 142, 173, 217 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 2 cut(s) | 9, 135 |
| MslI | CAYNNNNRTG | 1 cut(s) | 9 |
| MspI | CCGG | 1 cut(s) | 141 |
| MspR9I | CCNGG | 1 cut(s) | 280 |
| MvaI | CCWGG | 1 cut(s) | 280 |
| MvnI | CGCG | 1 cut(s) | 204 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 47, 53, 56, 62, 82, 137 |
| NdeII | GATC | 3 cut(s) | 93, 120, 339 |
| NheI | GCTAGC | 1 cut(s) | 314 |
| NlaIII | CATG | 1 cut(s) | 8 |
| NlaIV | GGNNCC | 1 cut(s) | 167 |
| NmuCI | GTSAC | 1 cut(s) | 13 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 8 |
| PceI | AGGCCT | 1 cut(s) | 183 |
| PciSI | GCTCTTC | 1 cut(s) | 238 |
| PfeI | GAWTC | 1 cut(s) | 224 |
| PkrI | GCNGC | 4 cut(s) | 49, 58, 246, 297 |
| Psp6I | CCWGG | 1 cut(s) | 278 |
| PspFI | CCCAGC | 1 cut(s) | 214 |
| PspGI | CCWGG | 1 cut(s) | 278 |
| PspN4I | GGNNCC | 1 cut(s) | 167 |
| PspOMI | GGGCCC | 1 cut(s) | 165 |
| PspPI | GGNCC | 3 cut(s) | 165, 166, 189 |
| RseI | CAYNNNNRTG | 1 cut(s) | 9 |
| SapI | GCTCTTC | 1 cut(s) | 238 |
| SaqAI | TTAA | 2 cut(s) | 9, 135 |
| SatI | GCNGC | 4 cut(s) | 48, 57, 245, 296 |
| Sau3AI | GATC | 3 cut(s) | 93, 120, 339 |
| Sau96I | GGNCC | 3 cut(s) | 165, 166, 189 |
| ScrFI | CCNGG | 1 cut(s) | 280 |
| SduI | GDGCHC | 1 cut(s) | 169 |
| SetI | ASST | 6 cut(s) | 49, 61, 87, 133, 281, 337 |
| SfcI | CTRYAG | 1 cut(s) | 116 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 9 |
| Sse9I | AATT | 1 cut(s) | 33 |
| SseBI | AGGCCT | 1 cut(s) | 183 |
| SsiI | CCGC | 3 cut(s) | 245, 249, 296 |
| SspMI | CTAG | 2 cut(s) | 51, 315 |
| StuI | AGGCCT | 1 cut(s) | 183 |
| StyD4I | CCNGG | 1 cut(s) | 278 |
| StyI | CCWWGG | 1 cut(s) | 161 |
| TaqI | TCGA | 1 cut(s) | 222 |
| TasI | AATT | 1 cut(s) | 33 |
| TauI | GCSGC | 2 cut(s) | 247, 298 |
| TfiI | GAWTC | 1 cut(s) | 224 |
| Tru1I | TTAA | 2 cut(s) | 9, 135 |
| Tru9I | TTAA | 2 cut(s) | 9, 135 |
| TseFI | GTSAC | 1 cut(s) | 13 |
| TseI | GCWGC | 2 cut(s) | 47, 56 |
| Tsp45I | GTSAC | 1 cut(s) | 13 |
| XceI | RCATGY | 1 cut(s) | 8 |
| XspI | CTAG | 2 cut(s) | 51, 315 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |