F-box kelch-repeat protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNA_methylase | PF00145 | 459 - 573 | 3.2e-08 | C-5 cytosine-specific DNA methylase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 731 |
| AccI | GTMKAC | 1 cut(s) | 1711 |
| AciI | CCGC | 3 cut(s) | 1150, 1409, 1567 |
| AclI | AACGTT | 1 cut(s) | 1485 |
| AclWI | GGATC | 1 cut(s) | 1106 |
| AcsI | RAATTY | 3 cut(s) | 884, 1229, 1525 |
| AfaI | GTAC | 3 cut(s) | 13, 464, 902 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 135, 731, 1267, 1425 |
| AflIII | ACRYGT | 1 cut(s) | 1356 |
| AgsI | TTSAA | 4 cut(s) | 65, 221, 1077, 1235 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 711 |
| AjnI | CCWGG | 2 cut(s) | 595, 1265 |
| Alw21I | GWGCWC | 1 cut(s) | 149 |
| Alw26I | GTCTC | 4 cut(s) | 698, 719, 1347, 1461 |
| AlwI | GGATC | 1 cut(s) | 1106 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1626 |
| Ama87I | CYCGRG | 2 cut(s) | 1301, 1670 |
| AoxI | GGCC | 1 cut(s) | 1025 |
| ApeKI | GCWGC | 4 cut(s) | 545, 785, 911, 914 |
| ApoI | RAATTY | 3 cut(s) | 884, 1229, 1525 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 13 |
| AspS9I | GGNCC | 2 cut(s) | 752, 794 |
| AsuHPI | GGTGA | 2 cut(s) | 407, 1526 |
| AvaI | CYCGRG | 2 cut(s) | 1301, 1670 |
| AvaII | GGWCC | 2 cut(s) | 752, 794 |
| BanII | GRGCYC | 1 cut(s) | 149 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1669, 1701 |
| Bbv12I | GWGCWC | 1 cut(s) | 149 |
| BbvI | GCAGC | 4 cut(s) | 532, 797, 898, 901 |
| BccI | CCATC | 4 cut(s) | 190, 208, 347, 1658 |
| BceAI | ACGGC | 1 cut(s) | 1155 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 107, 141 |
| BciT130I | CCWGG | 2 cut(s) | 597, 1267 |
| BciVI | GTATCC | 1 cut(s) | 1445 |
| BclI | TGATCA | 2 cut(s) | 181, 450 |
| BcoDI | GTCTC | 4 cut(s) | 698, 719, 1347, 1461 |
| BfaI | CTAG | 7 cut(s) | 96, 293, 584, 918, 1184, 1460, 1607 |
| BfmI | CTRYAG | 1 cut(s) | 489 |
| BfuI | GTATCC | 1 cut(s) | 1445 |
| BisI | GCNGC | 4 cut(s) | 546, 786, 912, 915 |
| BlsI | GCNGC | 4 cut(s) | 547, 787, 913, 916 |
| BmcAI | AGTACT | 2 cut(s) | 13, 902 |
| Bme1390I | CCNGG | 2 cut(s) | 597, 1267 |
| Bme18I | GGWCC | 2 cut(s) | 752, 794 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 711 |
| BmeT110I | CYCGRG | 2 cut(s) | 1301, 1670 |
| BmgT120I | GGNCC | 2 cut(s) | 752, 794 |
| BmrFI | CCNGG | 2 cut(s) | 597, 1267 |
| BmsI | GCATC | 3 cut(s) | 247, 559, 1380 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 131, 163, 1653, 1685 |
| BpuEI | CTTGAG | 2 cut(s) | 1133, 1238 |
| Bsa29I | ATCGAT | 1 cut(s) | 1651 |
| BsaBI | GATNNNNATC | 2 cut(s) | 330, 1294 |
| BsaJI | CCNNGG | 2 cut(s) | 423, 1266 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 70, 100 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 135, 731, 1267, 1425 |
| Bse1I | ACTGG | 3 cut(s) | 115, 754, 1719 |
| Bse3DI | GCAATG | 1 cut(s) | 1001 |
| Bse8I | GATNNNNATC | 2 cut(s) | 330, 1294 |
| BseBI | CCWGG | 2 cut(s) | 597, 1267 |
| BseCI | ATCGAT | 1 cut(s) | 1651 |
| BseDI | CCNNGG | 2 cut(s) | 423, 1266 |
| BseGI | GGATG | 4 cut(s) | 10, 201, 373, 419 |
| BseJI | GATNNNNATC | 2 cut(s) | 330, 1294 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 135, 731, 1267, 1425 |
| BseMI | GCAATG | 1 cut(s) | 1001 |
| BseMII | CTCAG | 1 cut(s) | 1481 |
| BseNI | ACTGG | 3 cut(s) | 115, 754, 1719 |
| BseRI | GAGGAG | 3 cut(s) | 266, 440, 488 |
| BseXI | GCAGC | 4 cut(s) | 532, 797, 898, 901 |
| BshFI | GGCC | 1 cut(s) | 1027 |
| BshVI | ATCGAT | 1 cut(s) | 1651 |
| BsiHKAI | GWGCWC | 1 cut(s) | 149 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1301, 1670 |
| BslFI | GGGAC | 4 cut(s) | 860, 1049, 1369, 1608 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 135, 731, 1267, 1425 |
| BsmAI | GTCTC | 4 cut(s) | 698, 719, 1347, 1461 |
| BsmBI | CGTCTC | 1 cut(s) | 719 |
| BsmFI | GGGAC | 4 cut(s) | 860, 1049, 1369, 1608 |
| BsmI | GAATGC | 2 cut(s) | 1172, 1312 |
| BsnI | GGCC | 1 cut(s) | 1027 |
| BsoBI | CYCGRG | 2 cut(s) | 1301, 1670 |
| Bsp1286I | GDGCHC | 1 cut(s) | 149 |
| Bsp143I | GATC | 5 cut(s) | 181, 331, 450, 1098, 1603 |
| BspACI | CCGC | 3 cut(s) | 1150, 1409, 1567 |
| BspANI | GGCC | 1 cut(s) | 1027 |
| BspCNI | CTCAG | 1 cut(s) | 1482 |
| BspDI | ATCGAT | 1 cut(s) | 1651 |
| BspHI | TCATGA | 2 cut(s) | 408, 1101 |
| BspPI | GGATC | 1 cut(s) | 1106 |
| BspQI | GCTCTTC | 1 cut(s) | 517 |
| BsrDI | GCAATG | 1 cut(s) | 1001 |
| BsrI | ACTGG | 3 cut(s) | 115, 754, 1719 |
| BssECI | CCNNGG | 2 cut(s) | 423, 1266 |
| BssMI | GATC | 5 cut(s) | 181, 331, 450, 1098, 1603 |
| BssNAI | GTATAC | 1 cut(s) | 1712 |
| Bst1107I | GTATAC | 1 cut(s) | 1712 |
| Bst2UI | CCWGG | 2 cut(s) | 597, 1267 |
| Bst4CI | ACNGT | 3 cut(s) | 709, 1327, 1578 |
| Bst6I | CTCTTC | 3 cut(s) | 465, 517, 582 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 569, 1626 |
| BstC8I | GCNNGC | 1 cut(s) | 145 |
| BstDEI | CTNAG | 5 cut(s) | 207, 506, 627, 897, 1490 |
| BstF5I | GGATG | 4 cut(s) | 10, 201, 373, 419 |
| BstKTI | GATC | 5 cut(s) | 184, 334, 453, 1101, 1606 |
| BstMAI | GTCTC | 4 cut(s) | 698, 719, 1347, 1461 |
| BstMBI | GATC | 5 cut(s) | 181, 331, 450, 1098, 1603 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 485, 554, 569, 682, 1415, 1626 |
| BstNI | CCWGG | 2 cut(s) | 597, 1267 |
| BstNSI | RCATGY | 1 cut(s) | 1360 |
| BstSCI | CCNGG | 2 cut(s) | 595, 1265 |
| BstSFI | CTRYAG | 1 cut(s) | 489 |
| BstV1I | GCAGC | 4 cut(s) | 532, 797, 898, 901 |
| BstZ17I | GTATAC | 1 cut(s) | 1712 |
| Bsu15I | ATCGAT | 1 cut(s) | 1651 |
| BsuI | GTATCC | 1 cut(s) | 1445 |
| BsuRI | GGCC | 1 cut(s) | 1027 |
| BsuTUI | ATCGAT | 1 cut(s) | 1651 |
| BtsCI | GGATG | 4 cut(s) | 10, 201, 373, 419 |
| BtsIMutI | CAGTG | 1 cut(s) | 615 |
| Cac8I | GCNNGC | 1 cut(s) | 145 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1626 |
| CciI | TCATGA | 2 cut(s) | 408, 1101 |
| Cfr13I | GGNCC | 2 cut(s) | 752, 794 |
| ClaI | ATCGAT | 1 cut(s) | 1651 |
| Csp6I | GTAC | 3 cut(s) | 12, 463, 901 |
| CviQI | GTAC | 3 cut(s) | 12, 463, 901 |
| DdeI | CTNAG | 5 cut(s) | 207, 506, 627, 897, 1490 |
| DpnI | GATC | 5 cut(s) | 183, 333, 452, 1100, 1605 |
| DpnII | GATC | 5 cut(s) | 181, 331, 450, 1098, 1603 |
| DriI | GACNNNNNGTC | 1 cut(s) | 711 |
| Eam1104I | CTCTTC | 3 cut(s) | 465, 517, 582 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 711 |
| EarI | CTCTTC | 3 cut(s) | 465, 517, 582 |
| EciI | GGCGGA | 1 cut(s) | 1424 |
| Ecl136II | GAGCTC | 1 cut(s) | 147 |
| Eco24I | GRGCYC | 1 cut(s) | 149 |
| Eco32I | GATATC | 1 cut(s) | 1655 |
| Eco47I | GGWCC | 2 cut(s) | 752, 794 |
| Eco53kI | GAGCTC | 1 cut(s) | 147 |
| Eco88I | CYCGRG | 2 cut(s) | 1301, 1670 |
| EcoICRI | GAGCTC | 1 cut(s) | 147 |
| EcoO109I | RGGNCCY | 1 cut(s) | 794 |
| EcoRII | CCWGG | 2 cut(s) | 595, 1265 |
| EcoRV | GATATC | 1 cut(s) | 1655 |
| EcoT22I | ATGCAT | 2 cut(s) | 1164, 1312 |
| EcoT38I | GRGCYC | 1 cut(s) | 149 |
| Esp3I | CGTCTC | 1 cut(s) | 719 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 45, 77, 558, 590 |
| FaqI | GGGAC | 4 cut(s) | 860, 1049, 1369, 1608 |
| FauI | CCCGC | 1 cut(s) | 1143 |
| FbaI | TGATCA | 2 cut(s) | 181, 450 |
| FblI | GTMKAC | 1 cut(s) | 1711 |
| Fnu4HI | GCNGC | 4 cut(s) | 546, 786, 912, 915 |
| FokI | GGATG | 4 cut(s) | 17, 208, 380, 406 |
| FriOI | GRGCYC | 1 cut(s) | 149 |
| Fsp4HI | GCNGC | 4 cut(s) | 546, 786, 912, 915 |
| FspBI | CTAG | 7 cut(s) | 96, 293, 584, 918, 1184, 1460, 1607 |
| GluI | GCNGC | 4 cut(s) | 546, 786, 912, 915 |
| HaeIII | GGCC | 1 cut(s) | 1027 |
| HincII | GTYRAC | 3 cut(s) | 892, 1089, 1477 |
| HindII | GTYRAC | 3 cut(s) | 892, 1089, 1477 |
| HindIII | AAGCTT | 1 cut(s) | 358 |
| HpaI | GTTAAC | 2 cut(s) | 1089, 1477 |
| HphI | GGTGA | 2 cut(s) | 407, 1526 |
| Hpy166II | GTNNAC | 6 cut(s) | 465, 892, 937, 1089, 1477, 1712 |
| Hpy188I | TCNGA | 7 cut(s) | 331, 346, 379, 424, 1317, 1471, 1491 |
| Hpy8I | GTNNAC | 6 cut(s) | 465, 892, 937, 1089, 1477, 1712 |
| Hpy99I | CGWCG | 1 cut(s) | 1331 |
| HpyAV | CCTTC | 6 cut(s) | 139, 584, 1038, 1099, 1430, 1547 |
| HpyCH4III | ACNGT | 3 cut(s) | 709, 1327, 1578 |
| HpyCH4IV | ACGT | 1 cut(s) | 1485 |
| HpyCH4V | TGCA | 8 cut(s) | 260, 316, 613, 1082, 1162, 1310, 1549, 1629 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 485, 554, 569, 682, 1415, 1626 |
| HpyF3I | CTNAG | 5 cut(s) | 207, 506, 627, 897, 1490 |
| HpySE526I | ACGT | 1 cut(s) | 1485 |
| Ksp22I | TGATCA | 2 cut(s) | 181, 450 |
| KspAI | GTTAAC | 2 cut(s) | 1089, 1477 |
| Kzo9I | GATC | 5 cut(s) | 181, 331, 450, 1098, 1603 |
| LguI | GCTCTTC | 1 cut(s) | 517 |
| LmnI | GCTCC | 2 cut(s) | 279, 1504 |
| Lsp1109I | GCAGC | 4 cut(s) | 532, 797, 898, 901 |
| LweI | GCATC | 3 cut(s) | 247, 559, 1380 |
| MaeI | CTAG | 7 cut(s) | 96, 293, 584, 918, 1184, 1460, 1607 |
| MaeII | ACGT | 1 cut(s) | 1485 |
| MalI | GATC | 5 cut(s) | 183, 333, 452, 1100, 1605 |
| MboI | GATC | 5 cut(s) | 181, 331, 450, 1098, 1603 |
| MhlI | GDGCHC | 1 cut(s) | 149 |
| MluCI | AATT | 8 cut(s) | 65, 228, 261, 524, 884, 1054, 1229, 1525 |
| MlyI | GAGTC | 4 cut(s) | 421, 887, 1152, 1662 |
| MmeI | TCCRAC | 3 cut(s) | 189, 770, 1174 |
| Mph1103I | ATGCAT | 2 cut(s) | 1164, 1312 |
| MroXI | GAANNNNTTC | 1 cut(s) | 13 |
| MseI | TTAA | 4 cut(s) | 1088, 1476, 1557, 1725 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1077, 1662 |
| MspA1I | CMGCKG | 1 cut(s) | 1150 |
| MspR9I | CCNGG | 2 cut(s) | 597, 1267 |
| Mva1269I | GAATGC | 2 cut(s) | 1172, 1312 |
| MvaI | CCWGG | 2 cut(s) | 597, 1267 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 485, 554, 569, 682, 1415, 1626 |
| NdeII | GATC | 5 cut(s) | 181, 331, 450, 1098, 1603 |
| NsiI | ATGCAT | 2 cut(s) | 1164, 1312 |
| NspI | RCATGY | 1 cut(s) | 1360 |
| PaeR7I | CTCGAG | 1 cut(s) | 1670 |
| PagI | TCATGA | 2 cut(s) | 408, 1101 |
| PciI | ACATGT | 1 cut(s) | 1356 |
| PciSI | GCTCTTC | 1 cut(s) | 517 |
| PctI | GAATGC | 2 cut(s) | 1172, 1312 |
| PdmI | GAANNNNTTC | 1 cut(s) | 13 |
| PfeI | GAWTC | 7 cut(s) | 284, 326, 861, 960, 1180, 1531, 1682 |
| PflFI | GACNNNGTC | 1 cut(s) | 1325 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 731 |
| PkrI | GCNGC | 4 cut(s) | 547, 787, 913, 916 |
| PleI | GAGTC | 4 cut(s) | 420, 887, 1151, 1662 |
| PpsI | GAGTC | 4 cut(s) | 420, 887, 1151, 1662 |
| PpuMI | RGGWCCY | 1 cut(s) | 794 |
| PscI | ACATGT | 1 cut(s) | 1356 |
| Psp124BI | GAGCTC | 1 cut(s) | 149 |
| Psp1406I | AACGTT | 1 cut(s) | 1485 |
| Psp5II | RGGWCCY | 1 cut(s) | 794 |
| Psp6I | CCWGG | 2 cut(s) | 595, 1265 |
| PspGI | CCWGG | 2 cut(s) | 595, 1265 |
| PspPI | GGNCC | 2 cut(s) | 752, 794 |
| PspPPI | RGGWCCY | 1 cut(s) | 794 |
| PspXI | VCTCGAGB | 1 cut(s) | 1670 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1626 |
| PsyI | GACNNNGTC | 1 cut(s) | 1325 |
| RsaI | GTAC | 3 cut(s) | 13, 464, 902 |
| RsaNI | GTAC | 3 cut(s) | 12, 463, 901 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1077, 1662 |
| SacI | GAGCTC | 1 cut(s) | 149 |
| SapI | GCTCTTC | 1 cut(s) | 517 |
| SaqAI | TTAA | 4 cut(s) | 1088, 1476, 1557, 1725 |
| SatI | GCNGC | 4 cut(s) | 546, 786, 912, 915 |
| Sau3AI | GATC | 5 cut(s) | 181, 331, 450, 1098, 1603 |
| Sau96I | GGNCC | 2 cut(s) | 752, 794 |
| ScaI | AGTACT | 2 cut(s) | 13, 902 |
| SchI | GAGTC | 4 cut(s) | 421, 887, 1152, 1662 |
| ScrFI | CCNGG | 2 cut(s) | 597, 1267 |
| SduI | GDGCHC | 1 cut(s) | 149 |
| SfaNI | GCATC | 3 cut(s) | 247, 559, 1380 |
| SfcI | CTRYAG | 1 cut(s) | 489 |
| Sfr274I | CTCGAG | 1 cut(s) | 1670 |
| SinI | GGWCC | 2 cut(s) | 752, 794 |
| SlaI | CTCGAG | 1 cut(s) | 1670 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1077, 1662 |
| SmlI | CTYRAG | 3 cut(s) | 1112, 1217, 1670 |
| SmoI | CTYRAG | 3 cut(s) | 1112, 1217, 1670 |
| Sse9I | AATT | 8 cut(s) | 65, 228, 261, 524, 884, 1054, 1229, 1525 |
| SsiI | CCGC | 3 cut(s) | 1150, 1409, 1567 |
| SspMI | CTAG | 7 cut(s) | 96, 293, 584, 918, 1184, 1460, 1607 |
| SstI | GAGCTC | 1 cut(s) | 149 |
| StyD4I | CCNGG | 2 cut(s) | 595, 1265 |
| TaaI | ACNGT | 3 cut(s) | 709, 1327, 1578 |
| TaiI | ACGT | 1 cut(s) | 1488 |
| TaqI | TCGA | 5 cut(s) | 662, 857, 951, 1651, 1671 |
| TasI | AATT | 8 cut(s) | 65, 228, 261, 524, 884, 1054, 1229, 1525 |
| TatI | WGTACW | 2 cut(s) | 11, 900 |
| TfiI | GAWTC | 7 cut(s) | 284, 326, 861, 960, 1180, 1531, 1682 |
| Tru1I | TTAA | 4 cut(s) | 1088, 1476, 1557, 1725 |
| Tru9I | TTAA | 4 cut(s) | 1088, 1476, 1557, 1725 |
| TscAI | CASTG | 1 cut(s) | 622 |
| TseI | GCWGC | 4 cut(s) | 545, 785, 911, 914 |
| TspDTI | ATGAA | 8 cut(s) | 669, 828, 1118, 1179, 1242, 1412, 1457, 1578 |
| TspGWI | ACGGA | 2 cut(s) | 1057, 1427 |
| TspRI | CASTG | 1 cut(s) | 622 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1325 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 731 |
| VpaK11BI | GGWCC | 2 cut(s) | 752, 794 |
| XapI | RAATTY | 3 cut(s) | 884, 1229, 1525 |
| XbaI | TCTAGA | 3 cut(s) | 292, 583, 1459 |
| XceI | RCATGY | 1 cut(s) | 1360 |
| XhoI | CTCGAG | 1 cut(s) | 1670 |
| XmiI | GTMKAC | 1 cut(s) | 1711 |
| XmnI | GAANNNNTTC | 1 cut(s) | 13 |
| XspI | CTAG | 7 cut(s) | 96, 293, 584, 918, 1184, 1460, 1607 |
| ZrmI | AGTACT | 2 cut(s) | 13, 902 |
| Zsp2I | ATGCAT | 2 cut(s) | 1164, 1312 |