Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 560, 752 |
| AccII | CGCG | 1 cut(s) | 890 |
| AciI | CCGC | 3 cut(s) | 737, 888, 890 |
| AclWI | GGATC | 1 cut(s) | 284 |
| AcoI | YGGCCR | 1 cut(s) | 734 |
| AcsI | RAATTY | 3 cut(s) | 150, 936, 1138 |
| AfaI | GTAC | 2 cut(s) | 229, 672 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 343, 560, 563, 752 |
| AflII | CTTAAG | 1 cut(s) | 52 |
| AgsI | TTSAA | 5 cut(s) | 70, 171, 689, 1122, 1137 |
| AluBI | AGCT | 5 cut(s) | 523, 621, 692, 862, 974 |
| AluI | AGCT | 5 cut(s) | 523, 621, 692, 862, 974 |
| Alw21I | GWGCWC | 2 cut(s) | 238, 1042 |
| AlwI | GGATC | 1 cut(s) | 284 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 41 |
| AoxI | GGCC | 2 cut(s) | 72, 734 |
| ApeKI | GCWGC | 6 cut(s) | 614, 634, 856, 859, 1019, 1256 |
| ApoI | RAATTY | 3 cut(s) | 150, 936, 1138 |
| AseI | ATTAAT | 1 cut(s) | 816 |
| AspLEI | GCGC | 1 cut(s) | 137 |
| AspS9I | GGNCC | 1 cut(s) | 1106 |
| AsuHPI | GGTGA | 4 cut(s) | 122, 137, 158, 707 |
| AsuNHI | GCTAGC | 2 cut(s) | 617, 794 |
| AvaII | GGWCC | 1 cut(s) | 1106 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 508, 540 |
| BbsI | GAAGAC | 1 cut(s) | 542 |
| Bbv12I | GWGCWC | 2 cut(s) | 238, 1042 |
| BbvI | GCAGC | 6 cut(s) | 601, 646, 868, 871, 1031, 1268 |
| BccI | CCATC | 2 cut(s) | 125, 986 |
| BceAI | ACGGC | 1 cut(s) | 748 |
| BciVI | GTATCC | 1 cut(s) | 30 |
| BclI | TGATCA | 1 cut(s) | 1207 |
| BfaI | CTAG | 3 cut(s) | 180, 618, 795 |
| BfrI | CTTAAG | 1 cut(s) | 52 |
| BfuI | GTATCC | 1 cut(s) | 30 |
| BisI | GCNGC | 7 cut(s) | 615, 635, 737, 857, 860, 1020, 1257 |
| BlsI | GCNGC | 7 cut(s) | 616, 636, 738, 858, 861, 1021, 1258 |
| Bme18I | GGWCC | 1 cut(s) | 1106 |
| BmgT120I | GGNCC | 1 cut(s) | 1106 |
| BmiI | GGNNCC | 2 cut(s) | 628, 894 |
| BmsI | GCATC | 4 cut(s) | 246, 403, 645, 1031 |
| BmtI | GCTAGC | 2 cut(s) | 621, 798 |
| BpiI | GAAGAC | 1 cut(s) | 542 |
| BsaJI | CCNNGG | 3 cut(s) | 23, 802, 888 |
| BsaWI | WCCGGW | 1 cut(s) | 238 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 914, 944 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 343, 560, 563, 752 |
| Bse1I | ACTGG | 2 cut(s) | 725, 1003 |
| Bse3DI | GCAATG | 2 cut(s) | 484, 1270 |
| BseDI | CCNNGG | 3 cut(s) | 23, 802, 888 |
| BseGI | GGATG | 5 cut(s) | 208, 392, 772, 997, 1133 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 343, 560, 563, 752 |
| BseMI | GCAATG | 2 cut(s) | 484, 1270 |
| BseMII | CTCAG | 3 cut(s) | 48, 414, 840 |
| BseNI | ACTGG | 2 cut(s) | 725, 1003 |
| BseRI | GAGGAG | 2 cut(s) | 287, 938 |
| BseXI | GCAGC | 6 cut(s) | 601, 646, 868, 871, 1031, 1268 |
| BseYI | CCCAGC | 1 cut(s) | 630 |
| BsgI | GTGCAG | 1 cut(s) | 208 |
| Bsh1236I | CGCG | 1 cut(s) | 890 |
| BshFI | GGCC | 2 cut(s) | 74, 736 |
| BsiHKAI | GWGCWC | 2 cut(s) | 238, 1042 |
| BsiSI | CCGG | 1 cut(s) | 239 |
| BslFI | GGGAC | 3 cut(s) | 362, 580, 916 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 343, 560, 563, 752 |
| BsmFI | GGGAC | 3 cut(s) | 362, 580, 916 |
| BsmI | GAATGC | 1 cut(s) | 453 |
| BsnI | GGCC | 2 cut(s) | 74, 736 |
| Bsp1286I | GDGCHC | 2 cut(s) | 238, 1042 |
| Bsp1407I | TGTACA | 2 cut(s) | 227, 670 |
| Bsp143I | GATC | 3 cut(s) | 289, 1192, 1207 |
| BspACI | CCGC | 3 cut(s) | 737, 888, 890 |
| BspANI | GGCC | 2 cut(s) | 74, 736 |
| BspCNI | CTCAG | 3 cut(s) | 47, 413, 839 |
| BspFNI | CGCG | 1 cut(s) | 890 |
| BspLI | GGNNCC | 2 cut(s) | 628, 894 |
| BspOI | GCTAGC | 2 cut(s) | 621, 798 |
| BspPI | GGATC | 1 cut(s) | 284 |
| BspTI | CTTAAG | 1 cut(s) | 52 |
| BsrDI | GCAATG | 2 cut(s) | 484, 1270 |
| BsrGI | TGTACA | 2 cut(s) | 227, 670 |
| BsrI | ACTGG | 2 cut(s) | 725, 1003 |
| BssECI | CCNNGG | 3 cut(s) | 23, 802, 888 |
| BssMI | GATC | 3 cut(s) | 289, 1192, 1207 |
| BssT1I | CCWWGG | 1 cut(s) | 802 |
| Bst4CI | ACNGT | 1 cut(s) | 1079 |
| Bst6I | CTCTTC | 2 cut(s) | 506, 1152 |
| BstAFI | CTTAAG | 1 cut(s) | 52 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 643 |
| BstAUI | TGTACA | 2 cut(s) | 227, 670 |
| BstDEI | CTNAG | 4 cut(s) | 34, 338, 400, 826 |
| BstDSI | CCRYGG | 1 cut(s) | 888 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 341 |
| BstF5I | GGATG | 5 cut(s) | 208, 392, 772, 997, 1133 |
| BstFNI | CGCG | 1 cut(s) | 890 |
| BstHHI | GCGC | 1 cut(s) | 137 |
| BstKTI | GATC | 3 cut(s) | 292, 1195, 1210 |
| BstMBI | GATC | 3 cut(s) | 289, 1192, 1207 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 71, 333, 643 |
| BstNSI | RCATGY | 3 cut(s) | 187, 646, 841 |
| BstUI | CGCG | 1 cut(s) | 890 |
| BstV1I | GCAGC | 6 cut(s) | 601, 646, 868, 871, 1031, 1268 |
| BstV2I | GAAGAC | 1 cut(s) | 542 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 732, 1103 |
| BsuI | GTATCC | 1 cut(s) | 30 |
| BsuRI | GGCC | 2 cut(s) | 74, 736 |
| BtgI | CCRYGG | 1 cut(s) | 888 |
| BtsCI | GGATG | 5 cut(s) | 208, 392, 772, 997, 1133 |
| BtsI | GCAGTG | 1 cut(s) | 196 |
| BtsIMutI | CAGTG | 1 cut(s) | 196 |
| CaiI | CAGNNNCTG | 1 cut(s) | 41 |
| CfoI | GCGC | 1 cut(s) | 137 |
| Cfr13I | GGNCC | 1 cut(s) | 1106 |
| Cfr42I | CCGCGG | 1 cut(s) | 891 |
| Csp6I | GTAC | 2 cut(s) | 228, 671 |
| CviAII | CATG | 9 cut(s) | 184, 333, 374, 643, 732, 838, 1043, 1211, 1270 |
| CviQI | GTAC | 2 cut(s) | 228, 671 |
| DdeI | CTNAG | 4 cut(s) | 34, 338, 400, 826 |
| DpnI | GATC | 3 cut(s) | 291, 1194, 1209 |
| DpnII | GATC | 3 cut(s) | 289, 1192, 1207 |
| EaeI | YGGCCR | 1 cut(s) | 734 |
| Eam1104I | CTCTTC | 2 cut(s) | 506, 1152 |
| EarI | CTCTTC | 2 cut(s) | 506, 1152 |
| Eco130I | CCWWGG | 1 cut(s) | 802 |
| Eco47I | GGWCC | 1 cut(s) | 1106 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 341 |
| EcoT14I | CCWWGG | 1 cut(s) | 802 |
| ErhI | CCWWGG | 1 cut(s) | 802 |
| FaeI | CATG | 9 cut(s) | 187, 336, 377, 646, 735, 841, 1046, 1214, 1273 |
| FaqI | GGGAC | 3 cut(s) | 362, 580, 916 |
| FatI | CATG | 9 cut(s) | 183, 332, 373, 642, 731, 837, 1042, 1210, 1269 |
| FauNDI | CATATG | 1 cut(s) | 1068 |
| FbaI | TGATCA | 1 cut(s) | 1207 |
| Fnu4HI | GCNGC | 7 cut(s) | 615, 635, 737, 857, 860, 1020, 1257 |
| FokI | GGATG | 5 cut(s) | 215, 379, 759, 1004, 1140 |
| Fsp4HI | GCNGC | 7 cut(s) | 615, 635, 737, 857, 860, 1020, 1257 |
| FspBI | CTAG | 3 cut(s) | 180, 618, 795 |
| GlaI | GCGC | 1 cut(s) | 136 |
| GluI | GCNGC | 7 cut(s) | 615, 635, 737, 857, 860, 1020, 1257 |
| GsaI | CCCAGC | 1 cut(s) | 634 |
| HaeIII | GGCC | 2 cut(s) | 74, 736 |
| HapII | CCGG | 1 cut(s) | 239 |
| HhaI | GCGC | 1 cut(s) | 137 |
| Hin1II | CATG | 9 cut(s) | 187, 336, 377, 646, 735, 841, 1046, 1214, 1273 |
| Hin6I | GCGC | 1 cut(s) | 135 |
| HinP1I | GCGC | 1 cut(s) | 135 |
| HinfI | GANTC | 6 cut(s) | 38, 176, 242, 386, 404, 959 |
| HpaII | CCGG | 1 cut(s) | 239 |
| HphI | GGTGA | 4 cut(s) | 122, 137, 158, 707 |
| Hpy166II | GTNNAC | 5 cut(s) | 301, 673, 768, 879, 1278 |
| Hpy188III | TCNNGA | 4 cut(s) | 383, 429, 1169, 1285 |
| Hpy8I | GTNNAC | 5 cut(s) | 301, 673, 768, 879, 1278 |
| HpyAV | CCTTC | 4 cut(s) | 510, 705, 1028, 1158 |
| HpyCH4III | ACNGT | 1 cut(s) | 1079 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 71, 333, 643 |
| HpyF3I | CTNAG | 4 cut(s) | 34, 338, 400, 826 |
| Hsp92II | CATG | 9 cut(s) | 187, 336, 377, 646, 735, 841, 1046, 1214, 1273 |
| HspAI | GCGC | 1 cut(s) | 135 |
| Ksp22I | TGATCA | 1 cut(s) | 1207 |
| KspI | CCGCGG | 1 cut(s) | 891 |
| Kzo9I | GATC | 3 cut(s) | 289, 1192, 1207 |
| LmnI | GCTCC | 5 cut(s) | 520, 697, 748, 925, 1037 |
| Lsp1109I | GCAGC | 6 cut(s) | 601, 646, 868, 871, 1031, 1268 |
| LweI | GCATC | 4 cut(s) | 246, 403, 645, 1031 |
| MaeI | CTAG | 3 cut(s) | 180, 618, 795 |
| MaeIII | GTNAC | 4 cut(s) | 29, 46, 110, 707 |
| MalI | GATC | 3 cut(s) | 291, 1194, 1209 |
| MboI | GATC | 3 cut(s) | 289, 1192, 1207 |
| MboII | GAAGA | 8 cut(s) | 89, 140, 381, 422, 523, 542, 1169, 1250 |
| MhlI | GDGCHC | 2 cut(s) | 238, 1042 |
| MmeI | TCCRAC | 1 cut(s) | 770 |
| MseI | TTAA | 2 cut(s) | 53, 816 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1101 |
| MspA1I | CMGCKG | 1 cut(s) | 890 |
| MspCI | CTTAAG | 1 cut(s) | 52 |
| MspI | CCGG | 1 cut(s) | 239 |
| Mva1269I | GAATGC | 1 cut(s) | 453 |
| MvnI | CGCG | 1 cut(s) | 890 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 71, 333, 643 |
| NdeI | CATATG | 1 cut(s) | 1068 |
| NdeII | GATC | 3 cut(s) | 289, 1192, 1207 |
| NheI | GCTAGC | 2 cut(s) | 617, 794 |
| NlaIII | CATG | 9 cut(s) | 187, 336, 377, 646, 735, 841, 1046, 1214, 1273 |
| NlaIV | GGNNCC | 2 cut(s) | 628, 894 |
| NmuCI | GTSAC | 1 cut(s) | 110 |
| NspI | RCATGY | 3 cut(s) | 187, 646, 841 |
| PaeI | GCATGC | 2 cut(s) | 646, 841 |
| PctI | GAATGC | 1 cut(s) | 453 |
| PfeI | GAWTC | 6 cut(s) | 38, 176, 242, 386, 404, 959 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 560, 752 |
| PkrI | GCNGC | 7 cut(s) | 616, 636, 738, 858, 861, 1021, 1258 |
| PshBI | ATTAAT | 1 cut(s) | 816 |
| PspFI | CCCAGC | 1 cut(s) | 630 |
| PspN4I | GGNNCC | 2 cut(s) | 628, 894 |
| PspPI | GGNCC | 1 cut(s) | 1106 |
| PstNI | CAGNNNCTG | 1 cut(s) | 41 |
| RsaI | GTAC | 2 cut(s) | 229, 672 |
| RsaNI | GTAC | 2 cut(s) | 228, 671 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1101 |
| SacII | CCGCGG | 1 cut(s) | 891 |
| SaqAI | TTAA | 2 cut(s) | 53, 816 |
| SatI | GCNGC | 7 cut(s) | 615, 635, 737, 857, 860, 1020, 1257 |
| Sau3AI | GATC | 3 cut(s) | 289, 1192, 1207 |
| Sau96I | GGNCC | 1 cut(s) | 1106 |
| SduI | GDGCHC | 2 cut(s) | 238, 1042 |
| SfaNI | GCATC | 4 cut(s) | 246, 403, 645, 1031 |
| Sfr303I | CCGCGG | 1 cut(s) | 891 |
| SgrBI | CCGCGG | 1 cut(s) | 891 |
| SinI | GGWCC | 1 cut(s) | 1106 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1101 |
| SmlI | CTYRAG | 1 cut(s) | 52 |
| SmoI | CTYRAG | 1 cut(s) | 52 |
| SphI | GCATGC | 2 cut(s) | 646, 841 |
| SsiI | CCGC | 3 cut(s) | 737, 888, 890 |
| SspMI | CTAG | 3 cut(s) | 180, 618, 795 |
| StyI | CCWWGG | 1 cut(s) | 802 |
| TaaI | ACNGT | 1 cut(s) | 1079 |
| TaqI | TCGA | 2 cut(s) | 254, 698 |
| TatI | WGTACW | 2 cut(s) | 227, 670 |
| TauI | GCSGC | 1 cut(s) | 739 |
| TfiI | GAWTC | 6 cut(s) | 38, 176, 242, 386, 404, 959 |
| Tru1I | TTAA | 2 cut(s) | 53, 816 |
| Tru9I | TTAA | 2 cut(s) | 53, 816 |
| TscAI | CASTG | 1 cut(s) | 196 |
| TseFI | GTSAC | 1 cut(s) | 110 |
| TseI | GCWGC | 6 cut(s) | 614, 634, 856, 859, 1019, 1256 |
| Tsp45I | GTSAC | 1 cut(s) | 110 |
| TspDTI | ATGAA | 5 cut(s) | 48, 381, 495, 720, 984 |
| TspGWI | ACGGA | 1 cut(s) | 935 |
| TspRI | CASTG | 1 cut(s) | 196 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 560, 752 |
| Vha464I | CTTAAG | 1 cut(s) | 52 |
| VpaK11BI | GGWCC | 1 cut(s) | 1106 |
| VspI | ATTAAT | 1 cut(s) | 816 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 341 |
| XapI | RAATTY | 3 cut(s) | 150, 936, 1138 |
| XceI | RCATGY | 3 cut(s) | 187, 646, 841 |
| XspI | CTAG | 3 cut(s) | 180, 618, 795 |