Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 42 - 107 | 1.2e-10 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3 |
| Acc36I | ACCTGC | 1 cut(s) | 3 |
| AcuI | CTGAAG | 1 cut(s) | 300 |
| AfaI | GTAC | 2 cut(s) | 243, 287 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 35, 228 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 327, 359 |
| AluBI | AGCT | 2 cut(s) | 69, 188 |
| AluI | AGCT | 2 cut(s) | 69, 188 |
| Alw21I | GWGCWC | 1 cut(s) | 20 |
| AoxI | GGCC | 1 cut(s) | 198 |
| ApeKI | GCWGC | 1 cut(s) | 266 |
| AspS9I | GGNCC | 2 cut(s) | 163, 173 |
| AsuHPI | GGTGA | 3 cut(s) | 106, 229, 305 |
| AvaII | GGWCC | 2 cut(s) | 163, 173 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 277, 310 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 234, 266 |
| BauI | CACGAG | 2 cut(s) | 117, 261 |
| Bbv12I | GWGCWC | 1 cut(s) | 20 |
| BbvI | GCAGC | 1 cut(s) | 278 |
| BccI | CCATC | 1 cut(s) | 230 |
| BfaI | CTAG | 1 cut(s) | 364 |
| BfuAI | ACCTGC | 1 cut(s) | 3 |
| BisI | GCNGC | 1 cut(s) | 267 |
| BlsI | GCNGC | 1 cut(s) | 268 |
| Bme18I | GGWCC | 2 cut(s) | 163, 173 |
| BmgT120I | GGNCC | 2 cut(s) | 163, 173 |
| BmiI | GGNNCC | 1 cut(s) | 165 |
| BmsI | GCATC | 2 cut(s) | 16, 155 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 35, 228 |
| Bse1I | ACTGG | 1 cut(s) | 176 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 35, 228 |
| BseMII | CTCAG | 1 cut(s) | 303 |
| BseNI | ACTGG | 1 cut(s) | 176 |
| BseXI | GCAGC | 1 cut(s) | 278 |
| BsgI | GTGCAG | 1 cut(s) | 285 |
| BshFI | GGCC | 1 cut(s) | 200 |
| BsiHKAI | GWGCWC | 1 cut(s) | 20 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 35, 228 |
| BsnI | GGCC | 1 cut(s) | 200 |
| Bsp1286I | GDGCHC | 1 cut(s) | 20 |
| BspANI | GGCC | 1 cut(s) | 200 |
| BspCNI | CTCAG | 1 cut(s) | 302 |
| BspHI | TCATGA | 1 cut(s) | 48 |
| BspLI | GGNNCC | 1 cut(s) | 165 |
| BspMI | ACCTGC | 1 cut(s) | 3 |
| BsrI | ACTGG | 1 cut(s) | 176 |
| BssSI | CACGAG | 2 cut(s) | 117, 261 |
| Bst2BI | CACGAG | 2 cut(s) | 117, 261 |
| BstDEI | CTNAG | 2 cut(s) | 31, 289 |
| BstEII | GGTNACC | 1 cut(s) | 217 |
| BstPI | GGTNACC | 1 cut(s) | 217 |
| BstV1I | GCAGC | 1 cut(s) | 278 |
| BsuRI | GGCC | 1 cut(s) | 200 |
| BtsIMutI | CAGTG | 1 cut(s) | 357 |
| BveI | ACCTGC | 1 cut(s) | 3 |
| CciI | TCATGA | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 2 cut(s) | 163, 173 |
| Csp6I | GTAC | 2 cut(s) | 242, 286 |
| CviAII | CATG | 1 cut(s) | 49 |
| CviJI | RGCY | 5 cut(s) | 61, 69, 188, 200, 269 |
| CviKI_1 | RGCY | 5 cut(s) | 61, 69, 188, 200, 269 |
| CviQI | GTAC | 2 cut(s) | 242, 286 |
| DdeI | CTNAG | 2 cut(s) | 31, 289 |
| Eco47I | GGWCC | 2 cut(s) | 163, 173 |
| Eco57I | CTGAAG | 1 cut(s) | 300 |
| Eco91I | GGTNACC | 1 cut(s) | 217 |
| EcoO109I | RGGNCCY | 1 cut(s) | 163 |
| EcoO65I | GGTNACC | 1 cut(s) | 217 |
| FaeI | CATG | 1 cut(s) | 52 |
| FaiI | YATR | 7 cut(s) | 44, 50, 74, 110, 171, 246, 333 |
| FatI | CATG | 1 cut(s) | 48 |
| Fnu4HI | GCNGC | 1 cut(s) | 267 |
| Fsp4HI | GCNGC | 1 cut(s) | 267 |
| FspBI | CTAG | 1 cut(s) | 364 |
| GluI | GCNGC | 1 cut(s) | 267 |
| HaeIII | GGCC | 1 cut(s) | 200 |
| Hin1II | CATG | 1 cut(s) | 52 |
| HincII | GTYRAC | 1 cut(s) | 276 |
| HindII | GTYRAC | 1 cut(s) | 276 |
| HphI | GGTGA | 3 cut(s) | 106, 229, 305 |
| Hpy166II | GTNNAC | 1 cut(s) | 276 |
| Hpy188III | TCNNGA | 2 cut(s) | 49, 119 |
| Hpy8I | GTNNAC | 1 cut(s) | 276 |
| HpyAV | CCTTC | 2 cut(s) | 190, 275 |
| HpyCH4V | TGCA | 3 cut(s) | 146, 266, 355 |
| HpyF3I | CTNAG | 2 cut(s) | 31, 289 |
| Hsp92II | CATG | 1 cut(s) | 52 |
| LpnPI | CCDG | 3 cut(s) | 189, 276, 354 |
| Lsp1109I | GCAGC | 1 cut(s) | 278 |
| LweI | GCATC | 2 cut(s) | 16, 155 |
| MaeI | CTAG | 1 cut(s) | 364 |
| MaeIII | GTNAC | 2 cut(s) | 112, 217 |
| MboII | GAAGA | 3 cut(s) | 144, 242, 245 |
| MhlI | GDGCHC | 1 cut(s) | 20 |
| MnlI | CCTC | 1 cut(s) | 154 |
| NlaIII | CATG | 1 cut(s) | 52 |
| NlaIV | GGNNCC | 1 cut(s) | 165 |
| NmuCI | GTSAC | 1 cut(s) | 217 |
| PagI | TCATGA | 1 cut(s) | 48 |
| PaqCI | CACCTGC | 1 cut(s) | 3 |
| PkrI | GCNGC | 1 cut(s) | 268 |
| PpuMI | RGGWCCY | 1 cut(s) | 163 |
| Psp5II | RGGWCCY | 1 cut(s) | 163 |
| PspEI | GGTNACC | 1 cut(s) | 217 |
| PspN4I | GGNNCC | 1 cut(s) | 165 |
| PspPI | GGNCC | 2 cut(s) | 163, 173 |
| PspPPI | RGGWCCY | 1 cut(s) | 163 |
| RsaI | GTAC | 2 cut(s) | 243, 287 |
| RsaNI | GTAC | 2 cut(s) | 242, 286 |
| SatI | GCNGC | 1 cut(s) | 267 |
| Sau96I | GGNCC | 2 cut(s) | 163, 173 |
| SduI | GDGCHC | 1 cut(s) | 20 |
| SetI | ASST | 6 cut(s) | 17, 71, 190, 219, 295, 343 |
| SfaNI | GCATC | 2 cut(s) | 16, 155 |
| SinI | GGWCC | 2 cut(s) | 163, 173 |
| SspMI | CTAG | 1 cut(s) | 364 |
| TatI | WGTACW | 1 cut(s) | 241 |
| TscAI | CASTG | 1 cut(s) | 357 |
| TseFI | GTSAC | 1 cut(s) | 217 |
| TseI | GCWGC | 1 cut(s) | 266 |
| Tsp45I | GTSAC | 1 cut(s) | 217 |
| TspRI | CASTG | 1 cut(s) | 357 |
| VpaK11BI | GGWCC | 2 cut(s) | 163, 173 |
| XspI | CTAG | 1 cut(s) | 364 |