zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SRF-TF | PF00319 | 10 - 57 | 3.7e-18 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 440 |
| Acc36I | ACCTGC | 1 cut(s) | 99 |
| AccB1I | GGYRCC | 1 cut(s) | 119 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 366 |
| AccI | GTMKAC | 1 cut(s) | 260 |
| AccII | CGCG | 1 cut(s) | 217 |
| AciI | CCGC | 3 cut(s) | 70, 215, 305 |
| AclWI | GGATC | 2 cut(s) | 206, 539 |
| AcoI | YGGCCR | 1 cut(s) | 54 |
| AcsI | RAATTY | 1 cut(s) | 631 |
| AcuI | CTGAAG | 1 cut(s) | 165 |
| AfaI | GTAC | 2 cut(s) | 526, 532 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 366 |
| AgeI | ACCGGT | 1 cut(s) | 165 |
| AgsI | TTSAA | 1 cut(s) | 389 |
| AhlI | ACTAGT | 1 cut(s) | 527 |
| AjnI | CCWGG | 2 cut(s) | 148, 359 |
| AluBI | AGCT | 5 cut(s) | 287, 316, 332, 349, 451 |
| AluI | AGCT | 5 cut(s) | 287, 316, 332, 349, 451 |
| Alw26I | GTCTC | 1 cut(s) | 464 |
| AlwI | GGATC | 2 cut(s) | 206, 539 |
| AoxI | GGCC | 2 cut(s) | 54, 357 |
| ApeKI | GCWGC | 2 cut(s) | 309, 329 |
| ApoI | RAATTY | 1 cut(s) | 631 |
| AsiGI | ACCGGT | 1 cut(s) | 165 |
| AspLEI | GCGC | 1 cut(s) | 620 |
| AsuHPI | GGTGA | 2 cut(s) | 164, 167 |
| BaeGI | GKGCMC | 1 cut(s) | 245 |
| BalI | TGGCCA | 1 cut(s) | 56 |
| BanI | GGYRCC | 1 cut(s) | 119 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 517, 523, 549, 555 |
| BauI | CACGAG | 1 cut(s) | 246 |
| BbsI | GAAGAC | 1 cut(s) | 282 |
| BbvI | GCAGC | 2 cut(s) | 321, 341 |
| BccI | CCATC | 2 cut(s) | 140, 200 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 579, 613 |
| BciT130I | CCWGG | 2 cut(s) | 150, 361 |
| BcoDI | GTCTC | 1 cut(s) | 464 |
| BcuI | ACTAGT | 1 cut(s) | 527 |
| BfaI | CTAG | 1 cut(s) | 528 |
| BfuAI | ACCTGC | 1 cut(s) | 99 |
| BisI | GCNGC | 3 cut(s) | 71, 310, 330 |
| BlsI | GCNGC | 3 cut(s) | 72, 311, 331 |
| BmcAI | AGTACT | 2 cut(s) | 526, 532 |
| Bme1390I | CCNGG | 2 cut(s) | 150, 361 |
| BmiI | GGNNCC | 1 cut(s) | 121 |
| BmrFI | CCNGG | 2 cut(s) | 150, 361 |
| BpiI | GAAGAC | 1 cut(s) | 282 |
| BpuEI | CTTGAG | 1 cut(s) | 431 |
| BsaBI | GATNNNNATC | 1 cut(s) | 20 |
| BsaWI | WCCGGW | 2 cut(s) | 116, 165 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 366 |
| Bse118I | RCCGGY | 1 cut(s) | 165 |
| Bse1I | ACTGG | 2 cut(s) | 96, 548 |
| Bse8I | GATNNNNATC | 1 cut(s) | 20 |
| BseBI | CCWGG | 2 cut(s) | 150, 361 |
| BseGI | GGATG | 1 cut(s) | 349 |
| BseJI | GATNNNNATC | 1 cut(s) | 20 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 366 |
| BseNI | ACTGG | 2 cut(s) | 96, 548 |
| BseSI | GKGCMC | 1 cut(s) | 245 |
| BseXI | GCAGC | 2 cut(s) | 321, 341 |
| Bsh1236I | CGCG | 1 cut(s) | 217 |
| BshFI | GGCC | 2 cut(s) | 56, 359 |
| BshNI | GGYRCC | 1 cut(s) | 119 |
| BshTI | ACCGGT | 1 cut(s) | 165 |
| BsiSI | CCGG | 2 cut(s) | 117, 166 |
| BslFI | GGGAC | 2 cut(s) | 18, 411 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 366 |
| BsmAI | GTCTC | 1 cut(s) | 464 |
| BsmBI | CGTCTC | 1 cut(s) | 464 |
| BsmFI | GGGAC | 2 cut(s) | 18, 411 |
| BsnI | GGCC | 2 cut(s) | 56, 359 |
| Bsp1286I | GDGCHC | 1 cut(s) | 245 |
| Bsp143I | GATC | 3 cut(s) | 199, 211, 544 |
| BspACI | CCGC | 3 cut(s) | 70, 215, 305 |
| BspANI | GGCC | 2 cut(s) | 56, 359 |
| BspFNI | CGCG | 1 cut(s) | 217 |
| BspHI | TCATGA | 1 cut(s) | 289 |
| BspLI | GGNNCC | 1 cut(s) | 121 |
| BspMI | ACCTGC | 1 cut(s) | 99 |
| BspPI | GGATC | 2 cut(s) | 206, 539 |
| BspT107I | GGYRCC | 1 cut(s) | 119 |
| BsrFI | RCCGGY | 1 cut(s) | 165 |
| BsrI | ACTGG | 2 cut(s) | 96, 548 |
| BssAI | RCCGGY | 1 cut(s) | 165 |
| BssMI | GATC | 3 cut(s) | 199, 211, 544 |
| BssNAI | GTATAC | 1 cut(s) | 261 |
| BssSI | CACGAG | 1 cut(s) | 246 |
| Bst1107I | GTATAC | 1 cut(s) | 261 |
| Bst2BI | CACGAG | 1 cut(s) | 246 |
| Bst2UI | CCWGG | 2 cut(s) | 150, 361 |
| Bst4CI | ACNGT | 2 cut(s) | 158, 566 |
| Bst6I | CTCTTC | 2 cut(s) | 470, 475 |
| BstC8I | GCNNGC | 3 cut(s) | 307, 314, 453 |
| BstDEI | CTNAG | 2 cut(s) | 66, 430 |
| BstEII | GGTNACC | 2 cut(s) | 152, 173 |
| BstF5I | GGATG | 1 cut(s) | 349 |
| BstFNI | CGCG | 1 cut(s) | 217 |
| BstHHI | GCGC | 1 cut(s) | 620 |
| BstKTI | GATC | 3 cut(s) | 202, 214, 547 |
| BstMAI | GTCTC | 1 cut(s) | 464 |
| BstMBI | GATC | 3 cut(s) | 199, 211, 544 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 128 |
| BstNI | CCWGG | 2 cut(s) | 150, 361 |
| BstPI | GGTNACC | 2 cut(s) | 152, 173 |
| BstSCI | CCNGG | 2 cut(s) | 148, 359 |
| BstSLI | GKGCMC | 1 cut(s) | 245 |
| BstUI | CGCG | 1 cut(s) | 217 |
| BstV1I | GCAGC | 2 cut(s) | 321, 341 |
| BstV2I | GAAGAC | 1 cut(s) | 282 |
| BstZ17I | GTATAC | 1 cut(s) | 261 |
| BsuRI | GGCC | 2 cut(s) | 56, 359 |
| BtsCI | GGATG | 1 cut(s) | 349 |
| BtsIMutI | CAGTG | 1 cut(s) | 103 |
| BveI | ACCTGC | 1 cut(s) | 99 |
| Cac8I | GCNNGC | 3 cut(s) | 307, 314, 453 |
| CciI | TCATGA | 1 cut(s) | 289 |
| CfoI | GCGC | 1 cut(s) | 620 |
| Cfr10I | RCCGGY | 1 cut(s) | 165 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 2 cut(s) | 525, 531 |
| CspAI | ACCGGT | 1 cut(s) | 165 |
| CviAII | CATG | 3 cut(s) | 290, 467, 610 |
| CviJI | RGCY | 8 cut(s) | 56, 95, 287, 316, 332, 349, 359, 451 |
| CviKI_1 | RGCY | 8 cut(s) | 56, 95, 287, 316, 332, 349, 359, 451 |
| CviQI | GTAC | 2 cut(s) | 525, 531 |
| DdeI | CTNAG | 2 cut(s) | 66, 430 |
| DpnI | GATC | 3 cut(s) | 201, 213, 546 |
| DpnII | GATC | 3 cut(s) | 199, 211, 544 |
| EaeI | YGGCCR | 1 cut(s) | 54 |
| Eam1104I | CTCTTC | 2 cut(s) | 470, 475 |
| EarI | CTCTTC | 2 cut(s) | 470, 475 |
| Eco57I | CTGAAG | 1 cut(s) | 165 |
| Eco91I | GGTNACC | 2 cut(s) | 152, 173 |
| EcoO65I | GGTNACC | 2 cut(s) | 152, 173 |
| EcoRII | CCWGG | 2 cut(s) | 148, 359 |
| Esp3I | CGTCTC | 1 cut(s) | 464 |
| FaeI | CATG | 3 cut(s) | 293, 470, 613 |
| FaqI | GGGAC | 2 cut(s) | 18, 411 |
| FatI | CATG | 3 cut(s) | 289, 466, 609 |
| FauI | CCCGC | 1 cut(s) | 298 |
| FauNDI | CATATG | 1 cut(s) | 457 |
| FblI | GTMKAC | 1 cut(s) | 260 |
| Fnu4HI | GCNGC | 3 cut(s) | 71, 310, 330 |
| FokI | GGATG | 1 cut(s) | 356 |
| Fsp4HI | GCNGC | 3 cut(s) | 71, 310, 330 |
| FspBI | CTAG | 1 cut(s) | 528 |
| GlaI | GCGC | 1 cut(s) | 619 |
| GluI | GCNGC | 3 cut(s) | 71, 310, 330 |
| HaeIII | GGCC | 2 cut(s) | 56, 359 |
| HapII | CCGG | 2 cut(s) | 117, 166 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 1 cut(s) | 620 |
| Hin1II | CATG | 3 cut(s) | 293, 470, 613 |
| Hin6I | GCGC | 1 cut(s) | 618 |
| HinP1I | GCGC | 1 cut(s) | 618 |
| HinfI | GANTC | 2 cut(s) | 188, 485 |
| HpaII | CCGG | 2 cut(s) | 117, 166 |
| HphI | GGTGA | 2 cut(s) | 164, 167 |
| Hpy166II | GTNNAC | 2 cut(s) | 163, 261 |
| Hpy188I | TCNGA | 1 cut(s) | 544 |
| Hpy188III | TCNNGA | 2 cut(s) | 25, 290 |
| Hpy8I | GTNNAC | 2 cut(s) | 163, 261 |
| Hpy99I | CGWCG | 1 cut(s) | 275 |
| HpyAV | CCTTC | 1 cut(s) | 189 |
| HpyCH4III | ACNGT | 2 cut(s) | 158, 566 |
| HpyCH4V | TGCA | 1 cut(s) | 108 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 128 |
| HpyF3I | CTNAG | 2 cut(s) | 66, 430 |
| Hsp92II | CATG | 3 cut(s) | 293, 470, 613 |
| HspAI | GCGC | 1 cut(s) | 618 |
| Kzo9I | GATC | 3 cut(s) | 199, 211, 544 |
| LmnI | GCTCC | 1 cut(s) | 603 |
| Lsp1109I | GCAGC | 2 cut(s) | 321, 341 |
| MaeI | CTAG | 1 cut(s) | 528 |
| MaeIII | GTNAC | 2 cut(s) | 152, 173 |
| MalI | GATC | 3 cut(s) | 201, 213, 546 |
| MboI | GATC | 3 cut(s) | 199, 211, 544 |
| MboII | GAAGA | 6 cut(s) | 25, 287, 401, 487, 492, 590 |
| MhlI | GDGCHC | 1 cut(s) | 245 |
| MlsI | TGGCCA | 1 cut(s) | 56 |
| MluCI | AATT | 3 cut(s) | 461, 621, 631 |
| MluNI | TGGCCA | 1 cut(s) | 56 |
| MlyI | GAGTC | 1 cut(s) | 182 |
| MnlI | CCTC | 1 cut(s) | 319 |
| Mox20I | TGGCCA | 1 cut(s) | 56 |
| MscI | TGGCCA | 1 cut(s) | 56 |
| MseI | TTAA | 3 cut(s) | 267, 624, 643 |
| MslI | CAYNNNNRTG | 1 cut(s) | 294 |
| Msp20I | TGGCCA | 1 cut(s) | 56 |
| MspA1I | CMGCKG | 1 cut(s) | 332 |
| MspI | CCGG | 2 cut(s) | 117, 166 |
| MspR9I | CCNGG | 2 cut(s) | 150, 361 |
| MvaI | CCWGG | 2 cut(s) | 150, 361 |
| MvnI | CGCG | 1 cut(s) | 217 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 128 |
| NdeI | CATATG | 1 cut(s) | 457 |
| NdeII | GATC | 3 cut(s) | 199, 211, 544 |
| NlaIII | CATG | 3 cut(s) | 293, 470, 613 |
| NlaIV | GGNNCC | 1 cut(s) | 121 |
| NmuCI | GTSAC | 2 cut(s) | 152, 173 |
| PagI | TCATGA | 1 cut(s) | 289 |
| PfeI | GAWTC | 1 cut(s) | 485 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 366 |
| PinAI | ACCGGT | 1 cut(s) | 165 |
| PkrI | GCNGC | 3 cut(s) | 72, 311, 331 |
| PleI | GAGTC | 1 cut(s) | 182 |
| PpsI | GAGTC | 1 cut(s) | 182 |
| PsiI | TTATAA | 1 cut(s) | 440 |
| Psp6I | CCWGG | 2 cut(s) | 148, 359 |
| PspEI | GGTNACC | 2 cut(s) | 152, 173 |
| PspGI | CCWGG | 2 cut(s) | 148, 359 |
| PspN4I | GGNNCC | 1 cut(s) | 121 |
| PvuII | CAGCTG | 1 cut(s) | 332 |
| RsaI | GTAC | 2 cut(s) | 526, 532 |
| RsaNI | GTAC | 2 cut(s) | 525, 531 |
| RseI | CAYNNNNRTG | 1 cut(s) | 294 |
| SaqAI | TTAA | 3 cut(s) | 267, 624, 643 |
| SatI | GCNGC | 3 cut(s) | 71, 310, 330 |
| Sau3AI | GATC | 3 cut(s) | 199, 211, 544 |
| ScaI | AGTACT | 2 cut(s) | 526, 532 |
| SchI | GAGTC | 1 cut(s) | 182 |
| ScrFI | CCNGG | 2 cut(s) | 150, 361 |
| SduI | GDGCHC | 1 cut(s) | 245 |
| SetI | ASST | 9 cut(s) | 51, 113, 154, 289, 318, 334, 351, 365, 453 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 294 |
| SmlI | CTYRAG | 1 cut(s) | 410 |
| SmoI | CTYRAG | 1 cut(s) | 410 |
| SpeI | ACTAGT | 1 cut(s) | 527 |
| Sse9I | AATT | 3 cut(s) | 461, 621, 631 |
| SsiI | CCGC | 3 cut(s) | 70, 215, 305 |
| SspMI | CTAG | 1 cut(s) | 528 |
| StyD4I | CCNGG | 2 cut(s) | 148, 359 |
| TaaI | ACNGT | 2 cut(s) | 158, 566 |
| TaqI | TCGA | 1 cut(s) | 24 |
| TasI | AATT | 3 cut(s) | 461, 621, 631 |
| TatI | WGTACW | 2 cut(s) | 524, 530 |
| TauI | GCSGC | 1 cut(s) | 73 |
| TfiI | GAWTC | 1 cut(s) | 485 |
| Tru1I | TTAA | 3 cut(s) | 267, 624, 643 |
| Tru9I | TTAA | 3 cut(s) | 267, 624, 643 |
| TscAI | CASTG | 1 cut(s) | 103 |
| TseFI | GTSAC | 2 cut(s) | 152, 173 |
| TseI | GCWGC | 2 cut(s) | 309, 329 |
| Tsp45I | GTSAC | 2 cut(s) | 152, 173 |
| TspDTI | ATGAA | 2 cut(s) | 297, 474 |
| TspGWI | ACGGA | 1 cut(s) | 246 |
| TspRI | CASTG | 1 cut(s) | 103 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 366 |
| XapI | RAATTY | 1 cut(s) | 631 |
| XmiI | GTMKAC | 1 cut(s) | 260 |
| XspI | CTAG | 1 cut(s) | 528 |
| ZrmI | AGTACT | 2 cut(s) | 526, 532 |