Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 61 - 111 | 1.5e-06 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 307 |
| AccBSI | CCGCTC | 1 cut(s) | 320 |
| AccI | GTMKAC | 1 cut(s) | 253 |
| AccII | CGCG | 1 cut(s) | 331 |
| AciI | CCGC | 2 cut(s) | 4, 320 |
| AfaI | GTAC | 2 cut(s) | 42, 334 |
| AflIII | ACRYGT | 1 cut(s) | 346 |
| AgsI | TTSAA | 4 cut(s) | 55, 125, 202, 290 |
| AluBI | AGCT | 6 cut(s) | 34, 64, 133, 188, 233, 311 |
| AluI | AGCT | 6 cut(s) | 34, 64, 133, 188, 233, 311 |
| AoxI | GGCC | 1 cut(s) | 237 |
| ApeKI | GCWGC | 6 cut(s) | 34, 64, 133, 188, 209, 308 |
| AspA2I | CCTAGG | 1 cut(s) | 145 |
| AspLEI | GCGC | 2 cut(s) | 308, 331 |
| AsuHPI | GGTGA | 1 cut(s) | 186 |
| AvrII | CCTAGG | 1 cut(s) | 145 |
| BanII | GRGCYC | 1 cut(s) | 172 |
| BbvCI | CCTCAGC | 1 cut(s) | 234 |
| BbvI | GCAGC | 6 cut(s) | 21, 51, 120, 175, 221, 320 |
| BccI | CCATC | 1 cut(s) | 19 |
| BfaI | CTAG | 3 cut(s) | 68, 137, 146 |
| BisI | GCNGC | 8 cut(s) | 5, 35, 65, 134, 189, 210, 309, 321 |
| BlnI | CCTAGG | 1 cut(s) | 145 |
| BlsI | GCNGC | 8 cut(s) | 6, 36, 66, 135, 190, 211, 310, 322 |
| Bpu10I | CCTNAGC | 1 cut(s) | 234 |
| BpuEI | CTTGAG | 1 cut(s) | 255 |
| BsaBI | GATNNNNATC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 1 cut(s) | 145 |
| Bse3DI | GCAATG | 1 cut(s) | 264 |
| Bse8I | GATNNNNATC | 1 cut(s) | 87 |
| BseDI | CCNNGG | 1 cut(s) | 145 |
| BseGI | GGATG | 2 cut(s) | 30, 286 |
| BseJI | GATNNNNATC | 1 cut(s) | 87 |
| BseMI | GCAATG | 1 cut(s) | 264 |
| BseMII | CTCAG | 1 cut(s) | 225 |
| BseXI | GCAGC | 6 cut(s) | 21, 51, 120, 175, 221, 320 |
| Bsh1236I | CGCG | 1 cut(s) | 331 |
| BshFI | GGCC | 1 cut(s) | 239 |
| BsmI | GAATGC | 2 cut(s) | 120, 157 |
| BsnI | GGCC | 1 cut(s) | 239 |
| Bsp1286I | GDGCHC | 1 cut(s) | 172 |
| Bsp143I | GATC | 1 cut(s) | 88 |
| BspACI | CCGC | 2 cut(s) | 4, 320 |
| BspANI | GGCC | 1 cut(s) | 239 |
| BspCNI | CTCAG | 1 cut(s) | 226 |
| BspFNI | CGCG | 1 cut(s) | 331 |
| BspQI | GCTCTTC | 2 cut(s) | 24, 123 |
| BsrBI | CCGCTC | 1 cut(s) | 320 |
| BsrDI | GCAATG | 1 cut(s) | 264 |
| BssECI | CCNNGG | 1 cut(s) | 145 |
| BssMI | GATC | 1 cut(s) | 88 |
| BssT1I | CCWWGG | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 2 cut(s) | 24, 123 |
| BstC8I | GCNNGC | 1 cut(s) | 246 |
| BstDEI | CTNAG | 1 cut(s) | 234 |
| BstF5I | GGATG | 2 cut(s) | 30, 286 |
| BstFNI | CGCG | 1 cut(s) | 331 |
| BstHHI | GCGC | 2 cut(s) | 308, 331 |
| BstKTI | GATC | 1 cut(s) | 91 |
| BstMBI | GATC | 1 cut(s) | 88 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 215, 245, 317, 326 |
| BstNSI | RCATGY | 1 cut(s) | 350 |
| BstUI | CGCG | 1 cut(s) | 331 |
| BstV1I | GCAGC | 6 cut(s) | 21, 51, 120, 175, 221, 320 |
| BsuRI | GGCC | 1 cut(s) | 239 |
| BtsCI | GGATG | 2 cut(s) | 30, 286 |
| Cac8I | GCNNGC | 1 cut(s) | 246 |
| CfoI | GCGC | 2 cut(s) | 308, 331 |
| CseI | GACGC | 2 cut(s) | 114, 201 |
| Csp6I | GTAC | 2 cut(s) | 41, 333 |
| CviAII | CATG | 4 cut(s) | 182, 206, 226, 347 |
| CviJI | RGCY | 9 cut(s) | 34, 64, 133, 170, 188, 233, 239, 263, 311 |
| CviKI_1 | RGCY | 9 cut(s) | 34, 64, 133, 170, 188, 233, 239, 263, 311 |
| CviQI | GTAC | 2 cut(s) | 41, 333 |
| DdeI | CTNAG | 1 cut(s) | 234 |
| DpnI | GATC | 1 cut(s) | 90 |
| DpnII | GATC | 1 cut(s) | 88 |
| Eam1104I | CTCTTC | 2 cut(s) | 24, 123 |
| EarI | CTCTTC | 2 cut(s) | 24, 123 |
| Eco130I | CCWWGG | 1 cut(s) | 145 |
| Eco147I | AGGCCT | 1 cut(s) | 239 |
| Eco24I | GRGCYC | 1 cut(s) | 172 |
| EcoT14I | CCWWGG | 1 cut(s) | 145 |
| EcoT38I | GRGCYC | 1 cut(s) | 172 |
| ErhI | CCWWGG | 1 cut(s) | 145 |
| FaeI | CATG | 4 cut(s) | 185, 209, 229, 350 |
| FaiI | YATR | 7 cut(s) | 87, 95, 183, 207, 227, 260, 348 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 21, 53 |
| FatI | CATG | 4 cut(s) | 181, 205, 225, 346 |
| FblI | GTMKAC | 1 cut(s) | 253 |
| Fnu4HI | GCNGC | 8 cut(s) | 5, 35, 65, 134, 189, 210, 309, 321 |
| FokI | GGATG | 2 cut(s) | 37, 293 |
| FriOI | GRGCYC | 1 cut(s) | 172 |
| Fsp4HI | GCNGC | 8 cut(s) | 5, 35, 65, 134, 189, 210, 309, 321 |
| FspBI | CTAG | 3 cut(s) | 68, 137, 146 |
| FspI | TGCGCA | 1 cut(s) | 307 |
| GlaI | GCGC | 2 cut(s) | 307, 330 |
| GluI | GCNGC | 8 cut(s) | 5, 35, 65, 134, 189, 210, 309, 321 |
| HaeIII | GGCC | 1 cut(s) | 239 |
| HgaI | GACGC | 2 cut(s) | 114, 201 |
| HhaI | GCGC | 2 cut(s) | 308, 331 |
| Hin1II | CATG | 4 cut(s) | 185, 209, 229, 350 |
| Hin6I | GCGC | 2 cut(s) | 306, 329 |
| HinP1I | GCGC | 2 cut(s) | 306, 329 |
| HinfI | GANTC | 3 cut(s) | 72, 141, 150 |
| HphI | GGTGA | 1 cut(s) | 186 |
| Hpy166II | GTNNAC | 1 cut(s) | 254 |
| Hpy188III | TCNNGA | 4 cut(s) | 55, 76, 125, 162 |
| Hpy8I | GTNNAC | 1 cut(s) | 254 |
| Hpy99I | CGWCG | 1 cut(s) | 108 |
| HpyAV | CCTTC | 2 cut(s) | 52, 159 |
| HpyCH4V | TGCA | 4 cut(s) | 47, 120, 157, 209 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 215, 245, 317, 326 |
| HpyF3I | CTNAG | 1 cut(s) | 234 |
| Hsp92II | CATG | 4 cut(s) | 185, 209, 229, 350 |
| HspAI | GCGC | 2 cut(s) | 306, 329 |
| Kzo9I | GATC | 1 cut(s) | 88 |
| LguI | GCTCTTC | 2 cut(s) | 24, 123 |
| LmnI | GCTCC | 4 cut(s) | 61, 113, 185, 317 |
| LpnPI | CCDG | 5 cut(s) | 85, 89, 147, 162, 234 |
| Lsp1109I | GCAGC | 6 cut(s) | 21, 51, 120, 175, 221, 320 |
| MaeI | CTAG | 3 cut(s) | 68, 137, 146 |
| MalI | GATC | 1 cut(s) | 90 |
| MbiI | CCGCTC | 1 cut(s) | 320 |
| MboI | GATC | 1 cut(s) | 88 |
| MboII | GAAGA | 2 cut(s) | 41, 140 |
| MfeI | CAATTG | 1 cut(s) | 324 |
| MhlI | GDGCHC | 1 cut(s) | 172 |
| MluCI | AATT | 1 cut(s) | 324 |
| MnlI | CCTC | 2 cut(s) | 15, 229 |
| MunI | CAATTG | 1 cut(s) | 324 |
| Mva1269I | GAATGC | 2 cut(s) | 120, 157 |
| MvnI | CGCG | 1 cut(s) | 331 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 215, 245, 317, 326 |
| NdeII | GATC | 1 cut(s) | 88 |
| NlaIII | CATG | 4 cut(s) | 185, 209, 229, 350 |
| NsbI | TGCGCA | 1 cut(s) | 307 |
| NspI | RCATGY | 1 cut(s) | 350 |
| PceI | AGGCCT | 1 cut(s) | 239 |
| PciI | ACATGT | 1 cut(s) | 346 |
| PciSI | GCTCTTC | 2 cut(s) | 24, 123 |
| PctI | GAATGC | 2 cut(s) | 120, 157 |
| PfeI | GAWTC | 3 cut(s) | 72, 141, 150 |
| PkrI | GCNGC | 8 cut(s) | 6, 36, 66, 135, 190, 211, 310, 322 |
| PscI | ACATGT | 1 cut(s) | 346 |
| RsaI | GTAC | 2 cut(s) | 42, 334 |
| RsaNI | GTAC | 2 cut(s) | 41, 333 |
| SapI | GCTCTTC | 2 cut(s) | 24, 123 |
| SatI | GCNGC | 8 cut(s) | 5, 35, 65, 134, 189, 210, 309, 321 |
| Sau3AI | GATC | 1 cut(s) | 88 |
| SduI | GDGCHC | 1 cut(s) | 172 |
| SetI | ASST | 8 cut(s) | 36, 66, 135, 190, 199, 235, 277, 313 |
| SmlI | CTYRAG | 1 cut(s) | 270 |
| SmoI | CTYRAG | 1 cut(s) | 270 |
| Sse9I | AATT | 1 cut(s) | 324 |
| SseBI | AGGCCT | 1 cut(s) | 239 |
| SsiI | CCGC | 2 cut(s) | 4, 320 |
| SspMI | CTAG | 3 cut(s) | 68, 137, 146 |
| StuI | AGGCCT | 1 cut(s) | 239 |
| StyI | CCWWGG | 1 cut(s) | 145 |
| TasI | AATT | 1 cut(s) | 324 |
| TatI | WGTACW | 1 cut(s) | 40 |
| TauI | GCSGC | 2 cut(s) | 7, 323 |
| TfiI | GAWTC | 3 cut(s) | 72, 141, 150 |
| TseI | GCWGC | 6 cut(s) | 34, 64, 133, 188, 209, 308 |
| TspDTI | ATGAA | 1 cut(s) | 354 |
| XceI | RCATGY | 1 cut(s) | 350 |
| XmaJI | CCTAGG | 1 cut(s) | 145 |
| XmiI | GTMKAC | 1 cut(s) | 253 |
| XspI | CTAG | 3 cut(s) | 68, 137, 146 |