Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 12 - 80 | 2.8e-12 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 65 |
| AciI | CCGC | 1 cut(s) | 359 |
| AcsI | RAATTY | 1 cut(s) | 44 |
| AcuI | CTGAAG | 1 cut(s) | 350 |
| AfaI | GTAC | 2 cut(s) | 82, 178 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 163 |
| AgsI | TTSAA | 2 cut(s) | 112, 209 |
| AjnI | CCWGG | 1 cut(s) | 76 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 230, 262 |
| AluBI | AGCT | 1 cut(s) | 134 |
| AluI | AGCT | 1 cut(s) | 134 |
| ApoI | RAATTY | 1 cut(s) | 44 |
| AspS9I | GGNCC | 1 cut(s) | 154 |
| AsuHPI | GGTGA | 2 cut(s) | 346, 373 |
| AvaII | GGWCC | 1 cut(s) | 154 |
| BccI | CCATC | 1 cut(s) | 245 |
| BceAI | ACGGC | 1 cut(s) | 99 |
| BciT130I | CCWGG | 1 cut(s) | 78 |
| BfaI | CTAG | 2 cut(s) | 87, 135 |
| BfmI | CTRYAG | 1 cut(s) | 129 |
| Bme1390I | CCNGG | 1 cut(s) | 78 |
| Bme18I | GGWCC | 1 cut(s) | 154 |
| BmgT120I | GGNCC | 1 cut(s) | 154 |
| BmiI | GGNNCC | 1 cut(s) | 156 |
| BmrFI | CCNGG | 1 cut(s) | 78 |
| BmsI | GCATC | 1 cut(s) | 27 |
| BpmI | CTGGAG | 1 cut(s) | 310 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 163 |
| BseBI | CCWGG | 1 cut(s) | 78 |
| BseGI | GGATG | 2 cut(s) | 202, 256 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 163 |
| BseRI | GAGGAG | 2 cut(s) | 20, 23 |
| BsgI | GTGCAG | 3 cut(s) | 38, 53, 371 |
| BslFI | GGGAC | 1 cut(s) | 140 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 163 |
| BsmFI | GGGAC | 1 cut(s) | 140 |
| BspACI | CCGC | 1 cut(s) | 359 |
| BspLI | GGNNCC | 1 cut(s) | 156 |
| Bst2UI | CCWGG | 1 cut(s) | 78 |
| Bst4CI | ACNGT | 1 cut(s) | 130 |
| BstF5I | GGATG | 2 cut(s) | 202, 256 |
| BstNI | CCWGG | 1 cut(s) | 78 |
| BstNSI | RCATGY | 1 cut(s) | 171 |
| BstSCI | CCNGG | 1 cut(s) | 76 |
| BstSFI | CTRYAG | 1 cut(s) | 129 |
| BtsCI | GGATG | 2 cut(s) | 202, 256 |
| Cfr13I | GGNCC | 1 cut(s) | 154 |
| Csp6I | GTAC | 2 cut(s) | 81, 177 |
| CviAII | CATG | 1 cut(s) | 168 |
| CviJI | RGCY | 2 cut(s) | 86, 134 |
| CviKI_1 | RGCY | 2 cut(s) | 86, 134 |
| CviQI | GTAC | 2 cut(s) | 81, 177 |
| Eco47I | GGWCC | 1 cut(s) | 154 |
| Eco57I | CTGAAG | 1 cut(s) | 350 |
| EcoO109I | RGGNCCY | 1 cut(s) | 154 |
| EcoRI | GAATTC | 1 cut(s) | 44 |
| EcoRII | CCWGG | 1 cut(s) | 76 |
| FaeI | CATG | 1 cut(s) | 171 |
| FaiI | YATR | 7 cut(s) | 100, 169, 184, 213, 232, 234, 313 |
| FaqI | GGGAC | 1 cut(s) | 140 |
| FatI | CATG | 1 cut(s) | 167 |
| FauNDI | CATATG | 1 cut(s) | 232 |
| FblI | GTMKAC | 1 cut(s) | 65 |
| FokI | GGATG | 2 cut(s) | 209, 263 |
| FspBI | CTAG | 2 cut(s) | 87, 135 |
| GsuI | CTGGAG | 1 cut(s) | 310 |
| Hin1II | CATG | 1 cut(s) | 171 |
| HinfI | GANTC | 3 cut(s) | 90, 189, 325 |
| HphI | GGTGA | 2 cut(s) | 346, 373 |
| Hpy166II | GTNNAC | 1 cut(s) | 66 |
| Hpy188I | TCNGA | 1 cut(s) | 330 |
| Hpy188III | TCNNGA | 3 cut(s) | 49, 289, 371 |
| Hpy8I | GTNNAC | 1 cut(s) | 66 |
| HpyAV | CCTTC | 3 cut(s) | 97, 232, 325 |
| HpyCH4III | ACNGT | 1 cut(s) | 130 |
| HpyCH4V | TGCA | 5 cut(s) | 19, 34, 40, 219, 352 |
| Hsp92II | CATG | 1 cut(s) | 171 |
| LpnPI | CCDG | 7 cut(s) | 5, 34, 63, 90, 137, 274, 356 |
| LweI | GCATC | 1 cut(s) | 27 |
| MaeI | CTAG | 2 cut(s) | 87, 135 |
| MboII | GAAGA | 1 cut(s) | 64 |
| MfeI | CAATTG | 1 cut(s) | 204 |
| MluCI | AATT | 4 cut(s) | 44, 115, 204, 274 |
| MlyI | GAGTC | 2 cut(s) | 84, 334 |
| MmeI | TCCRAC | 1 cut(s) | 228 |
| MnlI | CCTC | 5 cut(s) | 16, 157, 285, 291, 357 |
| MseI | TTAA | 1 cut(s) | 273 |
| MspR9I | CCNGG | 1 cut(s) | 78 |
| MunI | CAATTG | 1 cut(s) | 204 |
| MvaI | CCWGG | 1 cut(s) | 78 |
| NdeI | CATATG | 1 cut(s) | 232 |
| NlaIII | CATG | 1 cut(s) | 171 |
| NlaIV | GGNNCC | 1 cut(s) | 156 |
| NspI | RCATGY | 1 cut(s) | 171 |
| PfeI | GAWTC | 1 cut(s) | 189 |
| PflFI | GACNNNGTC | 1 cut(s) | 225 |
| PleI | GAGTC | 2 cut(s) | 84, 333 |
| PpsI | GAGTC | 2 cut(s) | 84, 333 |
| PpuMI | RGGWCCY | 1 cut(s) | 154 |
| Psp5II | RGGWCCY | 1 cut(s) | 154 |
| Psp6I | CCWGG | 1 cut(s) | 76 |
| PspGI | CCWGG | 1 cut(s) | 76 |
| PspN4I | GGNNCC | 1 cut(s) | 156 |
| PspPI | GGNCC | 1 cut(s) | 154 |
| PspPPI | RGGWCCY | 1 cut(s) | 154 |
| PsyI | GACNNNGTC | 1 cut(s) | 225 |
| RsaI | GTAC | 2 cut(s) | 82, 178 |
| RsaNI | GTAC | 2 cut(s) | 81, 177 |
| SaqAI | TTAA | 1 cut(s) | 273 |
| Sau96I | GGNCC | 1 cut(s) | 154 |
| SchI | GAGTC | 2 cut(s) | 84, 334 |
| ScrFI | CCNGG | 1 cut(s) | 78 |
| SetI | ASST | 7 cut(s) | 27, 82, 108, 136, 156, 336, 368 |
| SfaNI | GCATC | 1 cut(s) | 27 |
| SfcI | CTRYAG | 1 cut(s) | 129 |
| SinI | GGWCC | 1 cut(s) | 154 |
| Sse9I | AATT | 4 cut(s) | 44, 115, 204, 274 |
| SsiI | CCGC | 1 cut(s) | 359 |
| SspMI | CTAG | 2 cut(s) | 87, 135 |
| StyD4I | CCNGG | 1 cut(s) | 76 |
| TaaI | ACNGT | 1 cut(s) | 130 |
| TasI | AATT | 4 cut(s) | 44, 115, 204, 274 |
| TatI | WGTACW | 1 cut(s) | 176 |
| TfiI | GAWTC | 1 cut(s) | 189 |
| Tru1I | TTAA | 1 cut(s) | 273 |
| Tru9I | TTAA | 1 cut(s) | 273 |
| TspDTI | ATGAA | 1 cut(s) | 213 |
| Tth111I | GACNNNGTC | 1 cut(s) | 225 |
| VpaK11BI | GGWCC | 1 cut(s) | 154 |
| XapI | RAATTY | 1 cut(s) | 44 |
| XceI | RCATGY | 1 cut(s) | 171 |
| XmiI | GTMKAC | 1 cut(s) | 65 |
| XspI | CTAG | 2 cut(s) | 87, 135 |