Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 486 |
| AcoI | YGGCCR | 1 cut(s) | 180 |
| AcsI | RAATTY | 1 cut(s) | 374 |
| AfaI | GTAC | 1 cut(s) | 792 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 283 |
| AflIII | ACRYGT | 1 cut(s) | 475 |
| AgsI | TTSAA | 5 cut(s) | 70, 115, 338, 562, 642 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 510 |
| AhlI | ACTAGT | 1 cut(s) | 146 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 270, 302 |
| AluBI | AGCT | 4 cut(s) | 273, 440, 530, 593 |
| AluI | AGCT | 4 cut(s) | 273, 440, 530, 593 |
| Alw26I | GTCTC | 3 cut(s) | 275, 450, 543 |
| AoxI | GGCC | 1 cut(s) | 180 |
| ApeKI | GCWGC | 2 cut(s) | 437, 452 |
| ApoI | RAATTY | 1 cut(s) | 374 |
| AspLEI | GCGC | 2 cut(s) | 95, 487 |
| AsuHPI | GGTGA | 1 cut(s) | 818 |
| BalI | TGGCCA | 1 cut(s) | 182 |
| BbvI | GCAGC | 2 cut(s) | 449, 464 |
| BccI | CCATC | 2 cut(s) | 566, 653 |
| BclI | TGATCA | 1 cut(s) | 736 |
| BcoDI | GTCTC | 3 cut(s) | 275, 450, 543 |
| BcuI | ACTAGT | 1 cut(s) | 146 |
| BfaI | CTAG | 4 cut(s) | 129, 147, 441, 458 |
| BisI | GCNGC | 2 cut(s) | 438, 453 |
| BlsI | GCNGC | 2 cut(s) | 439, 454 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 510 |
| BmiI | GGNNCC | 1 cut(s) | 64 |
| BmsI | GCATC | 1 cut(s) | 406 |
| BpmI | CTGGAG | 1 cut(s) | 432 |
| Bpu10I | CCTNAGC | 1 cut(s) | 189 |
| BsaI | GGTCTC | 1 cut(s) | 450 |
| BsaJI | CCNNGG | 1 cut(s) | 171 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 210, 240, 540, 570 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 283 |
| Bse3DI | GCAATG | 1 cut(s) | 95 |
| BseDI | CCNNGG | 1 cut(s) | 171 |
| BseGI | GGATG | 2 cut(s) | 79, 629 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BseMI | GCAATG | 1 cut(s) | 95 |
| BseMII | CTCAG | 1 cut(s) | 180 |
| BseRI | GAGGAG | 1 cut(s) | 23 |
| BseXI | GCAGC | 2 cut(s) | 449, 464 |
| BshFI | GGCC | 1 cut(s) | 182 |
| BslFI | GGGAC | 2 cut(s) | 94, 765 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BsmAI | GTCTC | 3 cut(s) | 275, 450, 543 |
| BsmBI | CGTCTC | 2 cut(s) | 275, 543 |
| BsmFI | GGGAC | 2 cut(s) | 94, 765 |
| BsnI | GGCC | 1 cut(s) | 182 |
| Bso31I | GGTCTC | 1 cut(s) | 450 |
| Bsp1407I | TGTACA | 1 cut(s) | 790 |
| Bsp143I | GATC | 2 cut(s) | 330, 736 |
| BspANI | GGCC | 1 cut(s) | 182 |
| BspCNI | CTCAG | 1 cut(s) | 181 |
| BspLI | GGNNCC | 1 cut(s) | 64 |
| BspTNI | GGTCTC | 1 cut(s) | 450 |
| BsrDI | GCAATG | 1 cut(s) | 95 |
| BsrGI | TGTACA | 1 cut(s) | 790 |
| BssECI | CCNNGG | 1 cut(s) | 171 |
| BssMI | GATC | 2 cut(s) | 330, 736 |
| BssT1I | CCWWGG | 1 cut(s) | 171 |
| Bst4CI | ACNGT | 1 cut(s) | 286 |
| Bst6I | CTCTTC | 3 cut(s) | 309, 333, 360 |
| BstAUI | TGTACA | 1 cut(s) | 790 |
| BstC8I | GCNNGC | 1 cut(s) | 195 |
| BstDEI | CTNAG | 2 cut(s) | 140, 189 |
| BstF5I | GGATG | 2 cut(s) | 79, 629 |
| BstHHI | GCGC | 2 cut(s) | 95, 487 |
| BstKTI | GATC | 2 cut(s) | 333, 739 |
| BstMAI | GTCTC | 3 cut(s) | 275, 450, 543 |
| BstMBI | GATC | 2 cut(s) | 330, 736 |
| BstNSI | RCATGY | 3 cut(s) | 197, 479, 513 |
| BstV1I | GCAGC | 2 cut(s) | 449, 464 |
| BsuRI | GGCC | 1 cut(s) | 182 |
| BtsCI | GGATG | 2 cut(s) | 79, 629 |
| Cac8I | GCNNGC | 1 cut(s) | 195 |
| CfoI | GCGC | 2 cut(s) | 95, 487 |
| Csp6I | GTAC | 1 cut(s) | 791 |
| CviAII | CATG | 5 cut(s) | 194, 237, 476, 510, 740 |
| CviJI | RGCY | 8 cut(s) | 176, 182, 222, 273, 440, 530, 593, 734 |
| CviKI_1 | RGCY | 8 cut(s) | 176, 182, 222, 273, 440, 530, 593, 734 |
| CviQI | GTAC | 1 cut(s) | 791 |
| DdeI | CTNAG | 2 cut(s) | 140, 189 |
| DpnI | GATC | 2 cut(s) | 332, 738 |
| DpnII | GATC | 2 cut(s) | 330, 736 |
| DriI | GACNNNNNGTC | 1 cut(s) | 510 |
| EaeI | YGGCCR | 1 cut(s) | 180 |
| Eam1104I | CTCTTC | 3 cut(s) | 309, 333, 360 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 510 |
| EarI | CTCTTC | 3 cut(s) | 309, 333, 360 |
| Eco130I | CCWWGG | 1 cut(s) | 171 |
| Eco31I | GGTCTC | 1 cut(s) | 450 |
| EcoT14I | CCWWGG | 1 cut(s) | 171 |
| ErhI | CCWWGG | 1 cut(s) | 171 |
| Esp3I | CGTCTC | 2 cut(s) | 275, 543 |
| FaeI | CATG | 5 cut(s) | 197, 240, 479, 513, 743 |
| FaqI | GGGAC | 2 cut(s) | 94, 765 |
| FatI | CATG | 5 cut(s) | 193, 236, 475, 509, 739 |
| FbaI | TGATCA | 1 cut(s) | 736 |
| Fnu4HI | GCNGC | 2 cut(s) | 438, 453 |
| FokI | GGATG | 2 cut(s) | 86, 636 |
| Fsp4HI | GCNGC | 2 cut(s) | 438, 453 |
| FspBI | CTAG | 4 cut(s) | 129, 147, 441, 458 |
| FspI | TGCGCA | 1 cut(s) | 486 |
| GlaI | GCGC | 2 cut(s) | 94, 486 |
| GluI | GCNGC | 2 cut(s) | 438, 453 |
| GsuI | CTGGAG | 1 cut(s) | 432 |
| HaeIII | GGCC | 1 cut(s) | 182 |
| HhaI | GCGC | 2 cut(s) | 95, 487 |
| Hin1II | CATG | 5 cut(s) | 197, 240, 479, 513, 743 |
| Hin6I | GCGC | 2 cut(s) | 93, 485 |
| HinP1I | GCGC | 2 cut(s) | 93, 485 |
| HincII | GTYRAC | 1 cut(s) | 168 |
| HindII | GTYRAC | 1 cut(s) | 168 |
| HinfI | GANTC | 2 cut(s) | 229, 562 |
| HpaI | GTTAAC | 1 cut(s) | 168 |
| HphI | GGTGA | 1 cut(s) | 818 |
| Hpy166II | GTNNAC | 2 cut(s) | 168, 500 |
| Hpy188III | TCNNGA | 1 cut(s) | 188 |
| Hpy8I | GTNNAC | 2 cut(s) | 168, 500 |
| HpyAV | CCTTC | 6 cut(s) | 71, 76, 109, 259, 427, 643 |
| HpyCH4III | ACNGT | 1 cut(s) | 286 |
| HpyCH4V | TGCA | 3 cut(s) | 301, 419, 509 |
| HpyF3I | CTNAG | 2 cut(s) | 140, 189 |
| Hsp92II | CATG | 5 cut(s) | 197, 240, 479, 513, 743 |
| HspAI | GCGC | 2 cut(s) | 93, 485 |
| Ksp22I | TGATCA | 1 cut(s) | 736 |
| KspAI | GTTAAC | 1 cut(s) | 168 |
| Kzo9I | GATC | 2 cut(s) | 330, 736 |
| LpnPI | CCDG | 8 cut(s) | 27, 44, 183, 201, 338, 462, 713, 734 |
| Lsp1109I | GCAGC | 2 cut(s) | 449, 464 |
| LweI | GCATC | 1 cut(s) | 406 |
| MaeI | CTAG | 4 cut(s) | 129, 147, 441, 458 |
| MaeIII | GTNAC | 2 cut(s) | 239, 710 |
| MalI | GATC | 2 cut(s) | 332, 738 |
| MboI | GATC | 2 cut(s) | 330, 736 |
| MboII | GAAGA | 4 cut(s) | 133, 326, 350, 377 |
| MlsI | TGGCCA | 1 cut(s) | 182 |
| MluCI | AATT | 6 cut(s) | 15, 102, 374, 582, 603, 755 |
| MluNI | TGGCCA | 1 cut(s) | 182 |
| MmeI | TCCRAC | 3 cut(s) | 539, 699, 742 |
| Mox20I | TGGCCA | 1 cut(s) | 182 |
| MscI | TGGCCA | 1 cut(s) | 182 |
| MseI | TTAA | 1 cut(s) | 167 |
| Msp20I | TGGCCA | 1 cut(s) | 182 |
| NdeII | GATC | 2 cut(s) | 330, 736 |
| NlaIII | CATG | 5 cut(s) | 197, 240, 479, 513, 743 |
| NlaIV | GGNNCC | 1 cut(s) | 64 |
| NmuCI | GTSAC | 1 cut(s) | 710 |
| NsbI | TGCGCA | 1 cut(s) | 486 |
| NspI | RCATGY | 3 cut(s) | 197, 479, 513 |
| PaeI | GCATGC | 1 cut(s) | 197 |
| PciI | ACATGT | 1 cut(s) | 475 |
| PfeI | GAWTC | 2 cut(s) | 229, 562 |
| PkrI | GCNGC | 2 cut(s) | 439, 454 |
| PscI | ACATGT | 1 cut(s) | 475 |
| PspN4I | GGNNCC | 1 cut(s) | 64 |
| RsaI | GTAC | 1 cut(s) | 792 |
| RsaNI | GTAC | 1 cut(s) | 791 |
| SaqAI | TTAA | 1 cut(s) | 167 |
| SatI | GCNGC | 2 cut(s) | 438, 453 |
| Sau3AI | GATC | 2 cut(s) | 330, 736 |
| SfaNI | GCATC | 1 cut(s) | 406 |
| SpeI | ACTAGT | 1 cut(s) | 146 |
| SphI | GCATGC | 1 cut(s) | 197 |
| Sse9I | AATT | 6 cut(s) | 15, 102, 374, 582, 603, 755 |
| SspI | AATATT | 1 cut(s) | 309 |
| SspMI | CTAG | 4 cut(s) | 129, 147, 441, 458 |
| StyI | CCWWGG | 1 cut(s) | 171 |
| TaaI | ACNGT | 1 cut(s) | 286 |
| TaqI | TCGA | 1 cut(s) | 532 |
| TasI | AATT | 6 cut(s) | 15, 102, 374, 582, 603, 755 |
| TatI | WGTACW | 1 cut(s) | 790 |
| TfiI | GAWTC | 2 cut(s) | 229, 562 |
| Tru1I | TTAA | 1 cut(s) | 167 |
| Tru9I | TTAA | 1 cut(s) | 167 |
| TseFI | GTSAC | 1 cut(s) | 710 |
| TseI | GCWGC | 2 cut(s) | 437, 452 |
| Tsp45I | GTSAC | 1 cut(s) | 710 |
| TspDTI | ATGAA | 3 cut(s) | 90, 540, 575 |
| TspGWI | ACGGA | 1 cut(s) | 437 |
| XapI | RAATTY | 1 cut(s) | 374 |
| XceI | RCATGY | 3 cut(s) | 197, 479, 513 |
| XspI | CTAG | 4 cut(s) | 129, 147, 441, 458 |