Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 3 - 105 | 4.3e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 115 |
| AfaI | GTAC | 1 cut(s) | 378 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 202 |
| AluBI | AGCT | 3 cut(s) | 35, 68, 321 |
| AluI | AGCT | 3 cut(s) | 35, 68, 321 |
| Alw26I | GTCTC | 1 cut(s) | 347 |
| AoxI | GGCC | 1 cut(s) | 44 |
| ApeKI | GCWGC | 2 cut(s) | 32, 170 |
| AseI | ATTAAT | 1 cut(s) | 72 |
| AspLEI | GCGC | 1 cut(s) | 91 |
| AsuNHI | GCTAGC | 1 cut(s) | 317 |
| BbsI | GAAGAC | 1 cut(s) | 95 |
| BbvCI | CCTCAGC | 1 cut(s) | 84 |
| BbvI | GCAGC | 2 cut(s) | 44, 157 |
| BcoDI | GTCTC | 1 cut(s) | 347 |
| BfaI | CTAG | 2 cut(s) | 318, 385 |
| BisI | GCNGC | 2 cut(s) | 33, 171 |
| BlsI | GCNGC | 2 cut(s) | 34, 172 |
| BmtI | GCTAGC | 1 cut(s) | 321 |
| BpiI | GAAGAC | 1 cut(s) | 95 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 137, 169 |
| Bpu10I | CCTNAGC | 1 cut(s) | 84 |
| BsaJI | CCNNGG | 1 cut(s) | 121 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 202 |
| BseDI | CCNNGG | 1 cut(s) | 121 |
| BseGI | GGATG | 2 cut(s) | 16, 379 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BseMII | CTCAG | 2 cut(s) | 75, 78 |
| BseXI | GCAGC | 2 cut(s) | 44, 157 |
| BsgI | GTGCAG | 1 cut(s) | 156 |
| BshFI | GGCC | 1 cut(s) | 46 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BsmAI | GTCTC | 1 cut(s) | 347 |
| BsnI | GGCC | 1 cut(s) | 46 |
| Bsp143I | GATC | 1 cut(s) | 251 |
| BspANI | GGCC | 1 cut(s) | 46 |
| BspCNI | CTCAG | 2 cut(s) | 76, 77 |
| BspOI | GCTAGC | 1 cut(s) | 321 |
| BssECI | CCNNGG | 1 cut(s) | 121 |
| BssMI | GATC | 1 cut(s) | 251 |
| BssNAI | GTATAC | 1 cut(s) | 116 |
| BssT1I | CCWWGG | 1 cut(s) | 121 |
| Bst1107I | GTATAC | 1 cut(s) | 116 |
| Bst4CI | ACNGT | 1 cut(s) | 278 |
| BstC8I | GCNNGC | 3 cut(s) | 57, 270, 319 |
| BstDEI | CTNAG | 2 cut(s) | 64, 84 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 200 |
| BstF5I | GGATG | 2 cut(s) | 16, 379 |
| BstHHI | GCGC | 1 cut(s) | 91 |
| BstKTI | GATC | 1 cut(s) | 254 |
| BstMAI | GTCTC | 1 cut(s) | 347 |
| BstMBI | GATC | 1 cut(s) | 251 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 52, 65, 314 |
| BstNSI | RCATGY | 2 cut(s) | 59, 272 |
| BstV1I | GCAGC | 2 cut(s) | 44, 157 |
| BstV2I | GAAGAC | 1 cut(s) | 95 |
| BstZ17I | GTATAC | 1 cut(s) | 116 |
| BsuRI | GGCC | 1 cut(s) | 46 |
| BtsCI | GGATG | 2 cut(s) | 16, 379 |
| Cac8I | GCNNGC | 3 cut(s) | 57, 270, 319 |
| CfoI | GCGC | 1 cut(s) | 91 |
| Csp6I | GTAC | 1 cut(s) | 377 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 273, 308 |
| CviAII | CATG | 2 cut(s) | 56, 269 |
| CviJI | RGCY | 6 cut(s) | 35, 46, 68, 83, 321, 346 |
| CviKI_1 | RGCY | 6 cut(s) | 35, 46, 68, 83, 321, 346 |
| CviQI | GTAC | 1 cut(s) | 377 |
| DdeI | CTNAG | 2 cut(s) | 64, 84 |
| DpnI | GATC | 1 cut(s) | 253 |
| DpnII | GATC | 1 cut(s) | 251 |
| Eco130I | CCWWGG | 1 cut(s) | 121 |
| Eco147I | AGGCCT | 1 cut(s) | 46 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 200 |
| EcoT14I | CCWWGG | 1 cut(s) | 121 |
| ErhI | CCWWGG | 1 cut(s) | 121 |
| FaeI | CATG | 2 cut(s) | 59, 272 |
| FaiI | YATR | 8 cut(s) | 23, 57, 77, 116, 237, 239, 270, 300 |
| FatI | CATG | 2 cut(s) | 55, 268 |
| FblI | GTMKAC | 1 cut(s) | 115 |
| Fnu4HI | GCNGC | 2 cut(s) | 33, 171 |
| FokI | GGATG | 1 cut(s) | 23 |
| Fsp4HI | GCNGC | 2 cut(s) | 33, 171 |
| FspBI | CTAG | 2 cut(s) | 318, 385 |
| GlaI | GCGC | 1 cut(s) | 90 |
| GluI | GCNGC | 2 cut(s) | 33, 171 |
| HaeIII | GGCC | 1 cut(s) | 46 |
| HhaI | GCGC | 1 cut(s) | 91 |
| Hin1II | CATG | 2 cut(s) | 59, 272 |
| Hin6I | GCGC | 1 cut(s) | 89 |
| HinP1I | GCGC | 1 cut(s) | 89 |
| HinfI | GANTC | 3 cut(s) | 152, 214, 355 |
| Hpy166II | GTNNAC | 1 cut(s) | 116 |
| Hpy188I | TCNGA | 3 cut(s) | 165, 202, 213 |
| Hpy188III | TCNNGA | 2 cut(s) | 218, 371 |
| Hpy8I | GTNNAC | 1 cut(s) | 116 |
| HpyAV | CCTTC | 2 cut(s) | 73, 170 |
| HpyCH4III | ACNGT | 1 cut(s) | 278 |
| HpyCH4V | TGCA | 3 cut(s) | 55, 59, 173 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 52, 65, 314 |
| HpyF3I | CTNAG | 2 cut(s) | 64, 84 |
| Hsp92II | CATG | 2 cut(s) | 59, 272 |
| HspAI | GCGC | 1 cut(s) | 89 |
| Kzo9I | GATC | 1 cut(s) | 251 |
| LpnPI | CCDG | 2 cut(s) | 79, 356 |
| Lsp1109I | GCAGC | 2 cut(s) | 44, 157 |
| MaeI | CTAG | 2 cut(s) | 318, 385 |
| MaeIII | GTNAC | 1 cut(s) | 149 |
| MalI | GATC | 1 cut(s) | 253 |
| MboI | GATC | 1 cut(s) | 251 |
| MboII | GAAGA | 2 cut(s) | 95, 98 |
| MlyI | GAGTC | 2 cut(s) | 146, 349 |
| MmeI | TCCRAC | 2 cut(s) | 107, 191 |
| MnlI | CCTC | 4 cut(s) | 36, 79, 181, 196 |
| MseI | TTAA | 1 cut(s) | 72 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 52, 65, 314 |
| NdeII | GATC | 1 cut(s) | 251 |
| NheI | GCTAGC | 1 cut(s) | 317 |
| NlaIII | CATG | 2 cut(s) | 59, 272 |
| NmuCI | GTSAC | 1 cut(s) | 149 |
| NspI | RCATGY | 2 cut(s) | 59, 272 |
| PaeI | GCATGC | 2 cut(s) | 59, 272 |
| PceI | AGGCCT | 1 cut(s) | 46 |
| PfeI | GAWTC | 1 cut(s) | 214 |
| PkrI | GCNGC | 2 cut(s) | 34, 172 |
| PleI | GAGTC | 2 cut(s) | 146, 349 |
| PpsI | GAGTC | 2 cut(s) | 146, 349 |
| PshBI | ATTAAT | 1 cut(s) | 72 |
| RsaI | GTAC | 1 cut(s) | 378 |
| RsaNI | GTAC | 1 cut(s) | 377 |
| SaqAI | TTAA | 1 cut(s) | 72 |
| SatI | GCNGC | 2 cut(s) | 33, 171 |
| Sau3AI | GATC | 1 cut(s) | 251 |
| SchI | GAGTC | 2 cut(s) | 146, 349 |
| SetI | ASST | 7 cut(s) | 37, 70, 127, 198, 207, 315, 323 |
| SphI | GCATGC | 2 cut(s) | 59, 272 |
| SseBI | AGGCCT | 1 cut(s) | 46 |
| SspMI | CTAG | 2 cut(s) | 318, 385 |
| StuI | AGGCCT | 1 cut(s) | 46 |
| StyI | CCWWGG | 1 cut(s) | 121 |
| TaaI | ACNGT | 1 cut(s) | 278 |
| TaqI | TCGA | 1 cut(s) | 250 |
| TatI | WGTACW | 1 cut(s) | 376 |
| TfiI | GAWTC | 1 cut(s) | 214 |
| Tru1I | TTAA | 1 cut(s) | 72 |
| Tru9I | TTAA | 1 cut(s) | 72 |
| TseFI | GTSAC | 1 cut(s) | 149 |
| TseI | GCWGC | 2 cut(s) | 32, 170 |
| Tsp45I | GTSAC | 1 cut(s) | 149 |
| TspDTI | ATGAA | 1 cut(s) | 92 |
| TspGWI | ACGGA | 1 cut(s) | 146 |
| VspI | ATTAAT | 1 cut(s) | 72 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 200 |
| XceI | RCATGY | 2 cut(s) | 59, 272 |
| XmiI | GTMKAC | 1 cut(s) | 115 |
| XspI | CTAG | 2 cut(s) | 318, 385 |