Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 99 | 1.6e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 289 |
| AciI | CCGC | 1 cut(s) | 144 |
| AcsI | RAATTY | 1 cut(s) | 244 |
| AfaI | GTAC | 1 cut(s) | 382 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 289 |
| AluBI | AGCT | 5 cut(s) | 17, 53, 67, 74, 83 |
| AluI | AGCT | 5 cut(s) | 17, 53, 67, 74, 83 |
| Alw26I | GTCTC | 2 cut(s) | 125, 332 |
| AoxI | GGCC | 2 cut(s) | 29, 85 |
| ApeKI | GCWGC | 1 cut(s) | 17 |
| ApoI | RAATTY | 1 cut(s) | 244 |
| AspS9I | GGNCC | 1 cut(s) | 178 |
| AsuC2I | CCSGG | 1 cut(s) | 356 |
| AvaII | GGWCC | 1 cut(s) | 178 |
| BbvI | GCAGC | 1 cut(s) | 4 |
| BccI | CCATC | 2 cut(s) | 55, 314 |
| BceAI | ACGGC | 1 cut(s) | 44 |
| BcnI | CCSGG | 1 cut(s) | 356 |
| BcoDI | GTCTC | 2 cut(s) | 125, 332 |
| BfaI | CTAG | 4 cut(s) | 68, 173, 303, 384 |
| BfmI | CTRYAG | 1 cut(s) | 56 |
| BisI | GCNGC | 2 cut(s) | 18, 144 |
| BlpI | GCTNAGC | 1 cut(s) | 13 |
| BlsI | GCNGC | 2 cut(s) | 19, 145 |
| Bme1390I | CCNGG | 1 cut(s) | 356 |
| Bme18I | GGWCC | 1 cut(s) | 178 |
| BmgT120I | GGNCC | 1 cut(s) | 178 |
| BmrFI | CCNGG | 1 cut(s) | 356 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 167, 199 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 13 |
| BpuEI | CTTGAG | 1 cut(s) | 146 |
| BpuMI | CCSGG | 1 cut(s) | 356 |
| BsaI | GGTCTC | 1 cut(s) | 125 |
| BsaJI | CCNNGG | 1 cut(s) | 39 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 289 |
| Bse3DI | GCAATG | 1 cut(s) | 297 |
| BseDI | CCNNGG | 1 cut(s) | 39 |
| BseGI | GGATG | 1 cut(s) | 364 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 289 |
| BseMI | GCAATG | 1 cut(s) | 297 |
| BseXI | GCAGC | 1 cut(s) | 4 |
| BsgI | GTGCAG | 1 cut(s) | 141 |
| BshFI | GGCC | 2 cut(s) | 31, 87 |
| BsiSI | CCGG | 1 cut(s) | 355 |
| BslFI | GGGAC | 1 cut(s) | 128 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 289 |
| BsmAI | GTCTC | 2 cut(s) | 125, 332 |
| BsmFI | GGGAC | 1 cut(s) | 128 |
| BsnI | GGCC | 2 cut(s) | 31, 87 |
| Bso31I | GGTCTC | 1 cut(s) | 125 |
| Bsp143I | GATC | 1 cut(s) | 47 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 13 |
| BspACI | CCGC | 1 cut(s) | 144 |
| BspANI | GGCC | 2 cut(s) | 31, 87 |
| BspMAI | CTGCAG | 1 cut(s) | 60 |
| BspTNI | GGTCTC | 1 cut(s) | 125 |
| BsrDI | GCAATG | 1 cut(s) | 297 |
| BssECI | CCNNGG | 1 cut(s) | 39 |
| BssMI | GATC | 1 cut(s) | 47 |
| BssT1I | CCWWGG | 1 cut(s) | 39 |
| Bst6I | CTCTTC | 1 cut(s) | 241 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 299 |
| BstC8I | GCNNGC | 2 cut(s) | 85, 228 |
| BstDEI | CTNAG | 1 cut(s) | 13 |
| BstF5I | GGATG | 1 cut(s) | 364 |
| BstKTI | GATC | 1 cut(s) | 50 |
| BstMAI | GTCTC | 2 cut(s) | 125, 332 |
| BstMBI | GATC | 1 cut(s) | 47 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 23, 64, 80, 299 |
| BstSCI | CCNGG | 1 cut(s) | 354 |
| BstSFI | CTRYAG | 1 cut(s) | 56 |
| BstV1I | GCAGC | 1 cut(s) | 4 |
| BsuRI | GGCC | 2 cut(s) | 31, 87 |
| BtsCI | GGATG | 1 cut(s) | 364 |
| Cac8I | GCNNGC | 2 cut(s) | 85, 228 |
| Cfr13I | GGNCC | 1 cut(s) | 178 |
| Csp6I | GTAC | 1 cut(s) | 381 |
| CviAII | CATG | 1 cut(s) | 378 |
| CviJI | RGCY | 8 cut(s) | 17, 31, 53, 67, 74, 83, 87, 324 |
| CviKI_1 | RGCY | 8 cut(s) | 17, 31, 53, 67, 74, 83, 87, 324 |
| CviQI | GTAC | 1 cut(s) | 381 |
| DdeI | CTNAG | 1 cut(s) | 13 |
| DpnI | GATC | 1 cut(s) | 49 |
| DpnII | GATC | 1 cut(s) | 47 |
| Eam1104I | CTCTTC | 1 cut(s) | 241 |
| EarI | CTCTTC | 1 cut(s) | 241 |
| Eco130I | CCWWGG | 1 cut(s) | 39 |
| Eco31I | GGTCTC | 1 cut(s) | 125 |
| Eco47I | GGWCC | 1 cut(s) | 178 |
| EcoO109I | RGGNCCY | 1 cut(s) | 178 |
| EcoT14I | CCWWGG | 1 cut(s) | 39 |
| ErhI | CCWWGG | 1 cut(s) | 39 |
| FaeI | CATG | 1 cut(s) | 381 |
| FaiI | YATR | 5 cut(s) | 77, 128, 220, 285, 379 |
| FaqI | GGGAC | 1 cut(s) | 128 |
| FatI | CATG | 1 cut(s) | 377 |
| Fnu4HI | GCNGC | 2 cut(s) | 18, 144 |
| FokI | GGATG | 1 cut(s) | 371 |
| Fsp4HI | GCNGC | 2 cut(s) | 18, 144 |
| FspBI | CTAG | 4 cut(s) | 68, 173, 303, 384 |
| GluI | GCNGC | 2 cut(s) | 18, 144 |
| HaeIII | GGCC | 2 cut(s) | 31, 87 |
| HapII | CCGG | 1 cut(s) | 355 |
| Hin1II | CATG | 1 cut(s) | 381 |
| HincII | GTYRAC | 1 cut(s) | 310 |
| HindII | GTYRAC | 1 cut(s) | 310 |
| HinfI | GANTC | 2 cut(s) | 340, 374 |
| HpaI | GTTAAC | 1 cut(s) | 310 |
| HpaII | CCGG | 1 cut(s) | 355 |
| Hpy166II | GTNNAC | 1 cut(s) | 310 |
| Hpy188I | TCNGA | 1 cut(s) | 187 |
| Hpy188III | TCNNGA | 2 cut(s) | 163, 173 |
| Hpy8I | GTNNAC | 1 cut(s) | 310 |
| HpyAV | CCTTC | 1 cut(s) | 98 |
| HpyCH4V | TGCA | 3 cut(s) | 58, 158, 230 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 23, 64, 80, 299 |
| HpyF3I | CTNAG | 1 cut(s) | 13 |
| Hsp92II | CATG | 1 cut(s) | 381 |
| KspAI | GTTAAC | 1 cut(s) | 310 |
| Kzo9I | GATC | 1 cut(s) | 47 |
| LmnI | GCTCC | 1 cut(s) | 64 |
| LpnPI | CCDG | 4 cut(s) | 69, 97, 357, 368 |
| Lsp1109I | GCAGC | 1 cut(s) | 4 |
| MaeI | CTAG | 4 cut(s) | 68, 173, 303, 384 |
| MalI | GATC | 1 cut(s) | 49 |
| MboI | GATC | 1 cut(s) | 47 |
| MboII | GAAGA | 1 cut(s) | 228 |
| MluCI | AATT | 1 cut(s) | 244 |
| MlyI | GAGTC | 2 cut(s) | 334, 368 |
| MnlI | CCTC | 4 cut(s) | 169, 191, 199, 364 |
| MseI | TTAA | 2 cut(s) | 309, 332 |
| MspA1I | CMGCKG | 1 cut(s) | 146 |
| MspI | CCGG | 1 cut(s) | 355 |
| MspR9I | CCNGG | 1 cut(s) | 356 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 23, 64, 80, 299 |
| NciI | CCSGG | 1 cut(s) | 356 |
| NdeII | GATC | 1 cut(s) | 47 |
| NlaIII | CATG | 1 cut(s) | 381 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 289 |
| PfoI | TCCNGGA | 1 cut(s) | 354 |
| PkrI | GCNGC | 2 cut(s) | 19, 145 |
| PleI | GAGTC | 2 cut(s) | 334, 368 |
| PpsI | GAGTC | 2 cut(s) | 334, 368 |
| PpuMI | RGGWCCY | 1 cut(s) | 178 |
| Psp5II | RGGWCCY | 1 cut(s) | 178 |
| PspPI | GGNCC | 1 cut(s) | 178 |
| PspPPI | RGGWCCY | 1 cut(s) | 178 |
| PstI | CTGCAG | 1 cut(s) | 60 |
| RsaI | GTAC | 1 cut(s) | 382 |
| RsaNI | GTAC | 1 cut(s) | 381 |
| SaqAI | TTAA | 2 cut(s) | 309, 332 |
| SatI | GCNGC | 2 cut(s) | 18, 144 |
| Sau3AI | GATC | 1 cut(s) | 47 |
| Sau96I | GGNCC | 1 cut(s) | 178 |
| SchI | GAGTC | 2 cut(s) | 334, 368 |
| ScrFI | CCNGG | 1 cut(s) | 356 |
| SetI | ASST | 8 cut(s) | 19, 55, 69, 76, 85, 183, 196, 219 |
| SfcI | CTRYAG | 1 cut(s) | 56 |
| SinI | GGWCC | 1 cut(s) | 178 |
| SmlI | CTYRAG | 1 cut(s) | 161 |
| SmoI | CTYRAG | 1 cut(s) | 161 |
| Sse9I | AATT | 1 cut(s) | 244 |
| SsiI | CCGC | 1 cut(s) | 144 |
| SspMI | CTAG | 4 cut(s) | 68, 173, 303, 384 |
| StyD4I | CCNGG | 1 cut(s) | 354 |
| StyI | CCWWGG | 1 cut(s) | 39 |
| TaqII | GACCGA | 1 cut(s) | 149 |
| TasI | AATT | 1 cut(s) | 244 |
| TatI | WGTACW | 1 cut(s) | 380 |
| TauI | GCSGC | 1 cut(s) | 146 |
| Tru1I | TTAA | 2 cut(s) | 309, 332 |
| Tru9I | TTAA | 2 cut(s) | 309, 332 |
| TseI | GCWGC | 1 cut(s) | 17 |
| TspDTI | ATGAA | 1 cut(s) | 92 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 289 |
| VpaK11BI | GGWCC | 1 cut(s) | 178 |
| XapI | RAATTY | 1 cut(s) | 244 |
| XbaI | TCTAGA | 1 cut(s) | 172 |
| XspI | CTAG | 4 cut(s) | 68, 173, 303, 384 |