Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 96 |
| Acc36I | ACCTGC | 1 cut(s) | 432 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 867, 892 |
| AccII | CGCG | 3 cut(s) | 772, 910, 912 |
| AciI | CCGC | 3 cut(s) | 20, 23, 660 |
| AclWI | GGATC | 1 cut(s) | 270 |
| AcsI | RAATTY | 2 cut(s) | 142, 504 |
| AcuI | CTGAAG | 2 cut(s) | 797, 830 |
| AcyI | GRCGYC | 1 cut(s) | 896 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 867, 892 |
| AgsI | TTSAA | 4 cut(s) | 8, 149, 224, 651 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 771 |
| AjnI | CCWGG | 1 cut(s) | 662 |
| AleI | CACNNNNGTG | 1 cut(s) | 77 |
| AluBI | AGCT | 2 cut(s) | 313, 754 |
| AluI | AGCT | 2 cut(s) | 313, 754 |
| Alw26I | GTCTC | 4 cut(s) | 38, 130, 477, 679 |
| AlwI | GGATC | 1 cut(s) | 270 |
| AoxI | GGCC | 3 cut(s) | 387, 657, 857 |
| ApeKI | GCWGC | 3 cut(s) | 356, 754, 841 |
| ApoI | RAATTY | 2 cut(s) | 142, 504 |
| AspLEI | GCGC | 2 cut(s) | 516, 912 |
| AspS9I | GGNCC | 2 cut(s) | 388, 858 |
| AsuHPI | GGTGA | 4 cut(s) | 151, 446, 613, 891 |
| BbsI | GAAGAC | 2 cut(s) | 660, 785 |
| BbvI | GCAGC | 3 cut(s) | 368, 741, 828 |
| BccI | CCATC | 3 cut(s) | 599, 632, 721 |
| BciT130I | CCWGG | 1 cut(s) | 664 |
| BcoDI | GTCTC | 4 cut(s) | 38, 130, 477, 679 |
| BfaI | CTAG | 3 cut(s) | 39, 326, 596 |
| BfuAI | ACCTGC | 1 cut(s) | 432 |
| BglII | AGATCT | 1 cut(s) | 823 |
| BisI | GCNGC | 6 cut(s) | 21, 24, 357, 660, 755, 842 |
| BlsI | GCNGC | 6 cut(s) | 22, 25, 358, 661, 756, 843 |
| Bme1390I | CCNGG | 1 cut(s) | 664 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 771 |
| BmgT120I | GGNCC | 2 cut(s) | 388, 858 |
| BmrFI | CCNGG | 1 cut(s) | 664 |
| BmrI | ACTGGG | 1 cut(s) | 897 |
| BmuI | ACTGGG | 1 cut(s) | 897 |
| BoxI | GACNNNNGTC | 2 cut(s) | 695, 739 |
| BpiI | GAAGAC | 2 cut(s) | 660, 785 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 802, 834 |
| BpmI | CTGGAG | 2 cut(s) | 804, 812 |
| BsaBI | GATNNNNATC | 1 cut(s) | 374 |
| BsaHI | GRCGYC | 1 cut(s) | 896 |
| BsaI | GGTCTC | 1 cut(s) | 679 |
| BsaWI | WCCGGW | 1 cut(s) | 10 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 867, 892 |
| Bse1I | ACTGG | 3 cut(s) | 829, 886, 903 |
| Bse8I | GATNNNNATC | 1 cut(s) | 374 |
| BseBI | CCWGG | 1 cut(s) | 664 |
| BseGI | GGATG | 2 cut(s) | 591, 728 |
| BseJI | GATNNNNATC | 1 cut(s) | 374 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 867, 892 |
| BseMII | CTCAG | 2 cut(s) | 20, 141 |
| BseNI | ACTGG | 3 cut(s) | 829, 886, 903 |
| BseRI | GAGGAG | 2 cut(s) | 29, 653 |
| BseXI | GCAGC | 3 cut(s) | 368, 741, 828 |
| BseYI | CCCAGC | 2 cut(s) | 704, 750 |
| Bsh1236I | CGCG | 3 cut(s) | 772, 910, 912 |
| BshFI | GGCC | 3 cut(s) | 389, 659, 859 |
| BsiSI | CCGG | 1 cut(s) | 11 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 867, 892 |
| BsmAI | GTCTC | 4 cut(s) | 38, 130, 477, 679 |
| BsmI | GAATGC | 2 cut(s) | 343, 643 |
| BsnI | GGCC | 3 cut(s) | 389, 659, 859 |
| Bso31I | GGTCTC | 1 cut(s) | 679 |
| Bsp143I | GATC | 4 cut(s) | 275, 761, 797, 823 |
| BspACI | CCGC | 3 cut(s) | 20, 23, 660 |
| BspANI | GGCC | 3 cut(s) | 389, 659, 859 |
| BspCNI | CTCAG | 2 cut(s) | 21, 140 |
| BspFNI | CGCG | 3 cut(s) | 772, 910, 912 |
| BspMI | ACCTGC | 1 cut(s) | 432 |
| BspPI | GGATC | 1 cut(s) | 270 |
| BspTNI | GGTCTC | 1 cut(s) | 679 |
| BsrI | ACTGG | 3 cut(s) | 829, 886, 903 |
| BssMI | GATC | 4 cut(s) | 275, 761, 797, 823 |
| BssNI | GRCGYC | 1 cut(s) | 896 |
| Bst2UI | CCWGG | 1 cut(s) | 664 |
| Bst4CI | ACNGT | 4 cut(s) | 385, 405, 741, 786 |
| Bst6I | CTCTTC | 1 cut(s) | 723 |
| BstACI | GRCGYC | 1 cut(s) | 896 |
| BstDEI | CTNAG | 3 cut(s) | 29, 127, 350 |
| BstF5I | GGATG | 2 cut(s) | 591, 728 |
| BstFNI | CGCG | 3 cut(s) | 772, 910, 912 |
| BstHHI | GCGC | 2 cut(s) | 516, 912 |
| BstKTI | GATC | 4 cut(s) | 278, 764, 800, 826 |
| BstMAI | GTCTC | 4 cut(s) | 38, 130, 477, 679 |
| BstMBI | GATC | 4 cut(s) | 275, 761, 797, 823 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 293, 596, 751, 937 |
| BstNI | CCWGG | 1 cut(s) | 664 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 695, 739 |
| BstSCI | CCNGG | 1 cut(s) | 662 |
| BstUI | CGCG | 3 cut(s) | 772, 910, 912 |
| BstV1I | GCAGC | 3 cut(s) | 368, 741, 828 |
| BstV2I | GAAGAC | 2 cut(s) | 660, 785 |
| BstX2I | RGATCY | 2 cut(s) | 275, 823 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 79 |
| BstYI | RGATCY | 2 cut(s) | 275, 823 |
| BsuRI | GGCC | 3 cut(s) | 389, 659, 859 |
| BtsCI | GGATG | 2 cut(s) | 591, 728 |
| BtsIMutI | CAGTG | 3 cut(s) | 390, 401, 486 |
| BveI | ACCTGC | 1 cut(s) | 432 |
| CfoI | GCGC | 2 cut(s) | 516, 912 |
| Cfr13I | GGNCC | 2 cut(s) | 388, 858 |
| CseI | GACGC | 2 cut(s) | 761, 885 |
| CviAII | CATG | 3 cut(s) | 239, 397, 412 |
| CviJI | RGCY | 9 cut(s) | 26, 313, 389, 438, 599, 659, 708, 754, 859 |
| CviKI_1 | RGCY | 9 cut(s) | 26, 313, 389, 438, 599, 659, 708, 754, 859 |
| DdeI | CTNAG | 3 cut(s) | 29, 127, 350 |
| DpnI | GATC | 4 cut(s) | 277, 763, 799, 825 |
| DpnII | GATC | 4 cut(s) | 275, 761, 797, 823 |
| DraI | TTTAAA | 1 cut(s) | 565 |
| DriI | GACNNNNNGTC | 1 cut(s) | 771 |
| Eam1104I | CTCTTC | 1 cut(s) | 723 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 771 |
| EarI | CTCTTC | 1 cut(s) | 723 |
| Eco31I | GGTCTC | 1 cut(s) | 679 |
| Eco57I | CTGAAG | 2 cut(s) | 797, 830 |
| EcoRII | CCWGG | 1 cut(s) | 662 |
| FaeI | CATG | 3 cut(s) | 242, 400, 415 |
| FatI | CATG | 3 cut(s) | 238, 396, 411 |
| FauNDI | CATATG | 1 cut(s) | 261 |
| Fnu4HI | GCNGC | 6 cut(s) | 21, 24, 357, 660, 755, 842 |
| FokI | GGATG | 2 cut(s) | 578, 715 |
| Fsp4HI | GCNGC | 6 cut(s) | 21, 24, 357, 660, 755, 842 |
| FspBI | CTAG | 3 cut(s) | 39, 326, 596 |
| GlaI | GCGC | 2 cut(s) | 515, 911 |
| GluI | GCNGC | 6 cut(s) | 21, 24, 357, 660, 755, 842 |
| GsaI | CCCAGC | 2 cut(s) | 708, 754 |
| GsuI | CTGGAG | 2 cut(s) | 804, 812 |
| HaeIII | GGCC | 3 cut(s) | 389, 659, 859 |
| HapII | CCGG | 1 cut(s) | 11 |
| HgaI | GACGC | 2 cut(s) | 761, 885 |
| HhaI | GCGC | 2 cut(s) | 516, 912 |
| Hin1I | GRCGYC | 1 cut(s) | 896 |
| Hin1II | CATG | 3 cut(s) | 242, 400, 415 |
| Hin6I | GCGC | 2 cut(s) | 514, 910 |
| HinP1I | GCGC | 2 cut(s) | 514, 910 |
| HinfI | GANTC | 4 cut(s) | 31, 123, 370, 618 |
| HpaII | CCGG | 1 cut(s) | 11 |
| HphI | GGTGA | 4 cut(s) | 151, 446, 613, 891 |
| Hpy166II | GTNNAC | 1 cut(s) | 191 |
| Hpy188I | TCNGA | 4 cut(s) | 30, 216, 537, 777 |
| Hpy188III | TCNNGA | 3 cut(s) | 129, 732, 821 |
| Hpy8I | GTNNAC | 1 cut(s) | 191 |
| Hpy99I | CGWCG | 3 cut(s) | 676, 790, 940 |
| HpyAV | CCTTC | 5 cut(s) | 130, 179, 358, 542, 649 |
| HpyCH4III | ACNGT | 4 cut(s) | 385, 405, 741, 786 |
| HpyCH4V | TGCA | 2 cut(s) | 91, 341 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 293, 596, 751, 937 |
| HpyF3I | CTNAG | 3 cut(s) | 29, 127, 350 |
| Hsp92I | GRCGYC | 1 cut(s) | 896 |
| Hsp92II | CATG | 3 cut(s) | 242, 400, 415 |
| HspAI | GCGC | 2 cut(s) | 514, 910 |
| Kzo9I | GATC | 4 cut(s) | 275, 761, 797, 823 |
| LmnI | GCTCC | 2 cut(s) | 235, 640 |
| Lsp1109I | GCAGC | 3 cut(s) | 368, 741, 828 |
| MaeI | CTAG | 3 cut(s) | 39, 326, 596 |
| MaeIII | GTNAC | 1 cut(s) | 897 |
| MalI | GATC | 4 cut(s) | 277, 763, 799, 825 |
| MboI | GATC | 4 cut(s) | 275, 761, 797, 823 |
| MboII | GAAGA | 5 cut(s) | 285, 639, 660, 710, 790 |
| MfeI | CAATTG | 1 cut(s) | 517 |
| MflI | RGATCY | 2 cut(s) | 275, 823 |
| MluCI | AATT | 7 cut(s) | 66, 142, 200, 331, 458, 504, 517 |
| MlyI | GAGTC | 2 cut(s) | 40, 132 |
| MmeI | TCCRAC | 2 cut(s) | 43, 860 |
| MnlI | CCTC | 7 cut(s) | 7, 10, 46, 449, 631, 720, 826 |
| MseI | TTAA | 2 cut(s) | 231, 564 |
| MslI | CAYNNNNRTG | 2 cut(s) | 77, 475 |
| MspA1I | CMGCKG | 1 cut(s) | 754 |
| MspI | CCGG | 1 cut(s) | 11 |
| MspR9I | CCNGG | 1 cut(s) | 664 |
| MunI | CAATTG | 1 cut(s) | 517 |
| Mva1269I | GAATGC | 2 cut(s) | 343, 643 |
| MvaI | CCWGG | 1 cut(s) | 664 |
| MvnI | CGCG | 3 cut(s) | 772, 910, 912 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 293, 596, 751, 937 |
| NdeI | CATATG | 1 cut(s) | 261 |
| NdeII | GATC | 4 cut(s) | 275, 761, 797, 823 |
| NlaIII | CATG | 3 cut(s) | 242, 400, 415 |
| NmuCI | GTSAC | 1 cut(s) | 897 |
| OliI | CACNNNNGTG | 1 cut(s) | 77 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 914 |
| PctI | GAATGC | 2 cut(s) | 343, 643 |
| PfeI | GAWTC | 2 cut(s) | 370, 618 |
| PflFI | GACNNNGTC | 1 cut(s) | 784 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 867, 892 |
| PkrI | GCNGC | 6 cut(s) | 22, 25, 358, 661, 756, 843 |
| PleI | GAGTC | 2 cut(s) | 39, 131 |
| PpsI | GAGTC | 2 cut(s) | 39, 131 |
| PshAI | GACNNNNGTC | 2 cut(s) | 695, 739 |
| PsiI | TTATAA | 1 cut(s) | 96 |
| Psp6I | CCWGG | 1 cut(s) | 662 |
| PspFI | CCCAGC | 2 cut(s) | 704, 750 |
| PspGI | CCWGG | 1 cut(s) | 662 |
| PspPI | GGNCC | 2 cut(s) | 388, 858 |
| PsuI | RGATCY | 2 cut(s) | 275, 823 |
| PsyI | GACNNNGTC | 1 cut(s) | 784 |
| PvuII | CAGCTG | 1 cut(s) | 754 |
| RseI | CAYNNNNRTG | 2 cut(s) | 77, 475 |
| SaqAI | TTAA | 2 cut(s) | 231, 564 |
| SatI | GCNGC | 6 cut(s) | 21, 24, 357, 660, 755, 842 |
| Sau3AI | GATC | 4 cut(s) | 275, 761, 797, 823 |
| Sau96I | GGNCC | 2 cut(s) | 388, 858 |
| SchI | GAGTC | 2 cut(s) | 40, 132 |
| ScrFI | CCNGG | 1 cut(s) | 664 |
| SetI | ASST | 9 cut(s) | 141, 190, 315, 426, 553, 588, 695, 756, 818 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 77, 475 |
| Sse9I | AATT | 7 cut(s) | 66, 142, 200, 331, 458, 504, 517 |
| SsiI | CCGC | 3 cut(s) | 20, 23, 660 |
| SspMI | CTAG | 3 cut(s) | 39, 326, 596 |
| StyD4I | CCNGG | 1 cut(s) | 662 |
| TaaI | ACNGT | 4 cut(s) | 385, 405, 741, 786 |
| TaqI | TCGA | 2 cut(s) | 764, 800 |
| TaqII | GACCGA | 1 cut(s) | 703 |
| TasI | AATT | 7 cut(s) | 66, 142, 200, 331, 458, 504, 517 |
| TauI | GCSGC | 3 cut(s) | 23, 26, 662 |
| TfiI | GAWTC | 2 cut(s) | 370, 618 |
| Tru1I | TTAA | 2 cut(s) | 231, 564 |
| Tru9I | TTAA | 2 cut(s) | 231, 564 |
| TscAI | CASTG | 3 cut(s) | 390, 408, 493 |
| TseFI | GTSAC | 1 cut(s) | 897 |
| TseI | GCWGC | 3 cut(s) | 356, 754, 841 |
| Tsp45I | GTSAC | 1 cut(s) | 897 |
| TspDTI | ATGAA | 8 cut(s) | 132, 198, 278, 428, 459, 497, 561, 710 |
| TspGWI | ACGGA | 2 cut(s) | 915, 924 |
| TspRI | CASTG | 3 cut(s) | 390, 408, 493 |
| Tth111I | GACNNNGTC | 1 cut(s) | 784 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 867, 892 |
| XapI | RAATTY | 2 cut(s) | 142, 504 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 631 |
| XspI | CTAG | 3 cut(s) | 39, 326, 596 |