Protein ROOT HAIR DEFECTIVE 3 homolog
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF212 | PF02681 | 23 - 156 | 2.9e-50 | Divergent PAP2 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 434 |
| Acc36I | ACCTGC | 2 cut(s) | 424, 434 |
| AccI | GTMKAC | 1 cut(s) | 257 |
| AciI | CCGC | 1 cut(s) | 84 |
| AclWI | GGATC | 2 cut(s) | 36, 49 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AjnI | CCWGG | 2 cut(s) | 131, 237 |
| AluBI | AGCT | 5 cut(s) | 20, 121, 174, 338, 367 |
| AluI | AGCT | 5 cut(s) | 20, 121, 174, 338, 367 |
| AlwI | GGATC | 2 cut(s) | 36, 49 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 23 |
| ApeKI | GCWGC | 1 cut(s) | 20 |
| AspLEI | GCGC | 1 cut(s) | 101 |
| AsuC2I | CCSGG | 1 cut(s) | 383 |
| AsuHPI | GGTGA | 2 cut(s) | 22, 118 |
| BamHI | GGATCC | 1 cut(s) | 41 |
| BbvI | GCAGC | 1 cut(s) | 7 |
| BccI | CCATC | 3 cut(s) | 41, 62, 144 |
| BceAI | ACGGC | 1 cut(s) | 172 |
| BciT130I | CCWGG | 2 cut(s) | 133, 239 |
| BclI | TGATCA | 1 cut(s) | 12 |
| BcnI | CCSGG | 1 cut(s) | 383 |
| BfaI | CTAG | 2 cut(s) | 159, 390 |
| BfuAI | ACCTGC | 2 cut(s) | 424, 434 |
| BisI | GCNGC | 1 cut(s) | 21 |
| BlpI | GCTNAGC | 1 cut(s) | 170 |
| BlsI | GCNGC | 1 cut(s) | 22 |
| Bme1390I | CCNGG | 3 cut(s) | 133, 239, 383 |
| BmiI | GGNNCC | 2 cut(s) | 43, 247 |
| BmrFI | CCNGG | 3 cut(s) | 133, 239, 383 |
| BmrI | ACTGGG | 1 cut(s) | 103 |
| BmsI | GCATC | 3 cut(s) | 16, 156, 292 |
| BmuI | ACTGGG | 1 cut(s) | 103 |
| BpmI | CTGGAG | 2 cut(s) | 198, 357 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 170 |
| BpuEI | CTTGAG | 1 cut(s) | 101 |
| BpuMI | CCSGG | 1 cut(s) | 383 |
| BsaWI | WCCGGW | 1 cut(s) | 248 |
| Bse1I | ACTGG | 2 cut(s) | 109, 313 |
| Bse3DI | GCAATG | 2 cut(s) | 267, 428 |
| BseBI | CCWGG | 2 cut(s) | 133, 239 |
| BseGI | GGATG | 2 cut(s) | 171, 464 |
| BseMI | GCAATG | 2 cut(s) | 267, 428 |
| BseNI | ACTGG | 2 cut(s) | 109, 313 |
| BseRI | GAGGAG | 1 cut(s) | 68 |
| BseXI | GCAGC | 1 cut(s) | 7 |
| BsgI | GTGCAG | 1 cut(s) | 468 |
| BsiSI | CCGG | 2 cut(s) | 249, 383 |
| BslFI | GGGAC | 1 cut(s) | 167 |
| BsmFI | GGGAC | 1 cut(s) | 167 |
| BsmI | GAATGC | 1 cut(s) | 189 |
| Bsp143I | GATC | 2 cut(s) | 12, 41 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 170 |
| BspACI | CCGC | 1 cut(s) | 84 |
| BspLI | GGNNCC | 2 cut(s) | 43, 247 |
| BspMI | ACCTGC | 2 cut(s) | 424, 434 |
| BspPI | GGATC | 2 cut(s) | 36, 49 |
| BsrDI | GCAATG | 2 cut(s) | 267, 428 |
| BsrI | ACTGG | 2 cut(s) | 109, 313 |
| BssMI | GATC | 2 cut(s) | 12, 41 |
| Bst2UI | CCWGG | 2 cut(s) | 133, 239 |
| Bst4CI | ACNGT | 1 cut(s) | 208 |
| BstDEI | CTNAG | 1 cut(s) | 170 |
| BstF5I | GGATG | 2 cut(s) | 171, 464 |
| BstHHI | GCGC | 1 cut(s) | 101 |
| BstKTI | GATC | 2 cut(s) | 15, 44 |
| BstMBI | GATC | 2 cut(s) | 12, 41 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 26 |
| BstNI | CCWGG | 2 cut(s) | 133, 239 |
| BstNSI | RCATGY | 1 cut(s) | 288 |
| BstSCI | CCNGG | 3 cut(s) | 131, 237, 381 |
| BstV1I | GCAGC | 1 cut(s) | 7 |
| BstX2I | RGATCY | 1 cut(s) | 41 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 274 |
| BstYI | RGATCY | 1 cut(s) | 41 |
| BtsCI | GGATG | 2 cut(s) | 171, 464 |
| BtsI | GCAGTG | 2 cut(s) | 279, 456 |
| BtsIMutI | CAGTG | 3 cut(s) | 204, 279, 456 |
| BveI | ACCTGC | 2 cut(s) | 424, 434 |
| CaiI | CAGNNNCTG | 1 cut(s) | 23 |
| CfoI | GCGC | 1 cut(s) | 101 |
| CsiI | ACCWGGT | 1 cut(s) | 131 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 3 cut(s) | 285, 295, 323 |
| CviJI | RGCY | 5 cut(s) | 20, 121, 174, 338, 367 |
| CviKI_1 | RGCY | 5 cut(s) | 20, 121, 174, 338, 367 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 1 cut(s) | 170 |
| DpnI | GATC | 2 cut(s) | 14, 43 |
| DpnII | GATC | 2 cut(s) | 12, 41 |
| EciI | GGCGGA | 1 cut(s) | 73 |
| EcoRII | CCWGG | 2 cut(s) | 131, 237 |
| FaeI | CATG | 3 cut(s) | 288, 298, 326 |
| FaiI | YATR | 9 cut(s) | 64, 286, 296, 300, 324, 423, 464, 472, 479 |
| FaqI | GGGAC | 1 cut(s) | 167 |
| FatI | CATG | 3 cut(s) | 284, 294, 322 |
| FbaI | TGATCA | 1 cut(s) | 12 |
| FblI | GTMKAC | 1 cut(s) | 257 |
| Fnu4HI | GCNGC | 1 cut(s) | 21 |
| FokI | GGATG | 2 cut(s) | 178, 471 |
| Fsp4HI | GCNGC | 1 cut(s) | 21 |
| FspBI | CTAG | 2 cut(s) | 159, 390 |
| GlaI | GCGC | 1 cut(s) | 100 |
| GluI | GCNGC | 1 cut(s) | 21 |
| GsuI | CTGGAG | 2 cut(s) | 198, 357 |
| HapII | CCGG | 2 cut(s) | 249, 383 |
| HhaI | GCGC | 1 cut(s) | 101 |
| Hin1II | CATG | 3 cut(s) | 288, 298, 326 |
| Hin6I | GCGC | 1 cut(s) | 99 |
| HinP1I | GCGC | 1 cut(s) | 99 |
| HincII | GTYRAC | 1 cut(s) | 258 |
| HindII | GTYRAC | 1 cut(s) | 258 |
| HindIII | AAGCTT | 1 cut(s) | 119 |
| HinfI | GANTC | 3 cut(s) | 155, 318, 410 |
| HpaII | CCGG | 2 cut(s) | 249, 383 |
| HphI | GGTGA | 2 cut(s) | 22, 118 |
| Hpy166II | GTNNAC | 2 cut(s) | 204, 258 |
| Hpy188III | TCNNGA | 3 cut(s) | 159, 177, 374 |
| Hpy8I | GTNNAC | 2 cut(s) | 204, 258 |
| Hpy99I | CGWCG | 1 cut(s) | 193 |
| HpyAV | CCTTC | 2 cut(s) | 97, 156 |
| HpyCH4III | ACNGT | 1 cut(s) | 208 |
| HpyCH4V | TGCA | 5 cut(s) | 221, 272, 433, 443, 449 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 26 |
| HpyF3I | CTNAG | 1 cut(s) | 170 |
| Hsp92II | CATG | 3 cut(s) | 288, 298, 326 |
| HspAI | GCGC | 1 cut(s) | 99 |
| Ksp22I | TGATCA | 1 cut(s) | 12 |
| Kzo9I | GATC | 2 cut(s) | 12, 41 |
| Lsp1109I | GCAGC | 1 cut(s) | 7 |
| LweI | GCATC | 3 cut(s) | 16, 156, 292 |
| MabI | ACCWGGT | 1 cut(s) | 131 |
| MaeI | CTAG | 2 cut(s) | 159, 390 |
| MaeIII | GTNAC | 2 cut(s) | 192, 208 |
| MalI | GATC | 2 cut(s) | 14, 43 |
| MboI | GATC | 2 cut(s) | 12, 41 |
| MflI | RGATCY | 1 cut(s) | 41 |
| MluCI | AATT | 1 cut(s) | 341 |
| MlyI | GAGTC | 2 cut(s) | 149, 312 |
| MseI | TTAA | 1 cut(s) | 347 |
| MslI | CAYNNNNRTG | 1 cut(s) | 272 |
| MspA1I | CMGCKG | 1 cut(s) | 20 |
| MspI | CCGG | 2 cut(s) | 249, 383 |
| MspR9I | CCNGG | 3 cut(s) | 133, 239, 383 |
| Mva1269I | GAATGC | 1 cut(s) | 189 |
| MvaI | CCWGG | 2 cut(s) | 133, 239 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 26 |
| NciI | CCSGG | 1 cut(s) | 383 |
| NdeII | GATC | 2 cut(s) | 12, 41 |
| NlaIII | CATG | 3 cut(s) | 288, 298, 326 |
| NlaIV | GGNNCC | 2 cut(s) | 43, 247 |
| NmuCI | GTSAC | 2 cut(s) | 192, 208 |
| NspI | RCATGY | 1 cut(s) | 288 |
| PaqCI | CACCTGC | 1 cut(s) | 434 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 197 |
| PctI | GAATGC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 410 |
| PfoI | TCCNGGA | 1 cut(s) | 237 |
| PkrI | GCNGC | 1 cut(s) | 22 |
| PleI | GAGTC | 2 cut(s) | 149, 312 |
| PpsI | GAGTC | 2 cut(s) | 149, 312 |
| Psp6I | CCWGG | 2 cut(s) | 131, 237 |
| PspGI | CCWGG | 2 cut(s) | 131, 237 |
| PspN4I | GGNNCC | 2 cut(s) | 43, 247 |
| PstNI | CAGNNNCTG | 1 cut(s) | 23 |
| PsuI | RGATCY | 1 cut(s) | 41 |
| PvuII | CAGCTG | 1 cut(s) | 20 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 1 cut(s) | 272 |
| SalI | GTCGAC | 1 cut(s) | 256 |
| SaqAI | TTAA | 1 cut(s) | 347 |
| SatI | GCNGC | 1 cut(s) | 21 |
| Sau3AI | GATC | 2 cut(s) | 12, 41 |
| SchI | GAGTC | 2 cut(s) | 149, 312 |
| ScrFI | CCNGG | 3 cut(s) | 133, 239, 383 |
| SexAI | ACCWGGT | 1 cut(s) | 131 |
| SfaNI | GCATC | 3 cut(s) | 16, 156, 292 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 272 |
| SmlI | CTYRAG | 1 cut(s) | 116 |
| SmoI | CTYRAG | 1 cut(s) | 116 |
| Sse9I | AATT | 1 cut(s) | 341 |
| SsiI | CCGC | 1 cut(s) | 84 |
| SspMI | CTAG | 2 cut(s) | 159, 390 |
| StyD4I | CCNGG | 3 cut(s) | 131, 237, 381 |
| TaaI | ACNGT | 1 cut(s) | 208 |
| TaqI | TCGA | 2 cut(s) | 257, 485 |
| TasI | AATT | 1 cut(s) | 341 |
| TfiI | GAWTC | 1 cut(s) | 410 |
| Tru1I | TTAA | 1 cut(s) | 347 |
| Tru9I | TTAA | 1 cut(s) | 347 |
| TscAI | CASTG | 3 cut(s) | 211, 279, 456 |
| TseFI | GTSAC | 2 cut(s) | 192, 208 |
| TseI | GCWGC | 1 cut(s) | 20 |
| Tsp45I | GTSAC | 2 cut(s) | 192, 208 |
| TspGWI | ACGGA | 1 cut(s) | 258 |
| TspRI | CASTG | 3 cut(s) | 211, 279, 456 |
| XbaI | TCTAGA | 1 cut(s) | 158 |
| XceI | RCATGY | 1 cut(s) | 288 |
| XmiI | GTMKAC | 1 cut(s) | 257 |
| XspI | CTAG | 2 cut(s) | 159, 390 |