Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 13 |
| Acc36I | ACCTGC | 1 cut(s) | 349 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 165 |
| AcoI | YGGCCR | 1 cut(s) | 45 |
| AcuI | CTGAAG | 1 cut(s) | 326 |
| AdeI | CACNNNGTG | 1 cut(s) | 296 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 32, 33, 165 |
| AjnI | CCWGG | 1 cut(s) | 265 |
| AluBI | AGCT | 2 cut(s) | 144, 345 |
| AluI | AGCT | 2 cut(s) | 144, 345 |
| Alw26I | GTCTC | 1 cut(s) | 231 |
| AoxI | GGCC | 4 cut(s) | 23, 45, 80, 117 |
| ApeKI | GCWGC | 2 cut(s) | 323, 342 |
| AspS9I | GGNCC | 1 cut(s) | 24 |
| AsuHPI | GGTGA | 1 cut(s) | 308 |
| BbsI | GAAGAC | 1 cut(s) | 317 |
| BbvCI | CCTCAGC | 1 cut(s) | 77 |
| BbvI | GCAGC | 2 cut(s) | 310, 354 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 347, 381 |
| BciT130I | CCWGG | 1 cut(s) | 267 |
| BciVI | GTATCC | 1 cut(s) | 162 |
| BclI | TGATCA | 1 cut(s) | 259 |
| BcoDI | GTCTC | 1 cut(s) | 231 |
| BfaI | CTAG | 1 cut(s) | 227 |
| BfmI | CTRYAG | 2 cut(s) | 91, 324 |
| BfuAI | ACCTGC | 1 cut(s) | 349 |
| BfuI | GTATCC | 1 cut(s) | 162 |
| BisI | GCNGC | 2 cut(s) | 324, 343 |
| BlsI | GCNGC | 2 cut(s) | 325, 344 |
| Bme1390I | CCNGG | 1 cut(s) | 267 |
| BmgT120I | GGNCC | 1 cut(s) | 24 |
| BmrFI | CCNGG | 1 cut(s) | 267 |
| BpiI | GAAGAC | 1 cut(s) | 317 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 329, 361 |
| Bpu10I | CCTNAGC | 1 cut(s) | 77 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 32, 33, 165 |
| Bse118I | RCCGGY | 2 cut(s) | 43, 72 |
| BseBI | CCWGG | 1 cut(s) | 267 |
| BseGI | GGATG | 1 cut(s) | 262 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 32, 33, 165 |
| BseMII | CTCAG | 2 cut(s) | 68, 368 |
| BseXI | GCAGC | 2 cut(s) | 310, 354 |
| BsgI | GTGCAG | 2 cut(s) | 120, 361 |
| BshFI | GGCC | 4 cut(s) | 25, 47, 82, 119 |
| BsiSI | CCGG | 2 cut(s) | 44, 73 |
| BslFI | GGGAC | 2 cut(s) | 49, 185 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 32, 33, 165 |
| BsmAI | GTCTC | 1 cut(s) | 231 |
| BsmBI | CGTCTC | 1 cut(s) | 231 |
| BsmFI | GGGAC | 2 cut(s) | 49, 185 |
| BsnI | GGCC | 4 cut(s) | 25, 47, 82, 119 |
| Bsp143I | GATC | 1 cut(s) | 259 |
| BspANI | GGCC | 4 cut(s) | 25, 47, 82, 119 |
| BspCNI | CTCAG | 2 cut(s) | 69, 367 |
| BspMAI | CTGCAG | 1 cut(s) | 328 |
| BspMI | ACCTGC | 1 cut(s) | 349 |
| BsrFI | RCCGGY | 2 cut(s) | 43, 72 |
| BssAI | RCCGGY | 2 cut(s) | 43, 72 |
| BssMI | GATC | 1 cut(s) | 259 |
| Bst2UI | CCWGG | 1 cut(s) | 267 |
| Bst4CI | ACNGT | 2 cut(s) | 199, 249 |
| BstC8I | GCNNGC | 2 cut(s) | 45, 142 |
| BstDEI | CTNAG | 2 cut(s) | 77, 354 |
| BstF5I | GGATG | 1 cut(s) | 262 |
| BstKTI | GATC | 1 cut(s) | 262 |
| BstMAI | GTCTC | 1 cut(s) | 231 |
| BstMBI | GATC | 1 cut(s) | 259 |
| BstNI | CCWGG | 1 cut(s) | 267 |
| BstSCI | CCNGG | 1 cut(s) | 265 |
| BstSFI | CTRYAG | 2 cut(s) | 91, 324 |
| BstV1I | GCAGC | 2 cut(s) | 310, 354 |
| BstV2I | GAAGAC | 1 cut(s) | 317 |
| BsuI | GTATCC | 1 cut(s) | 162 |
| BsuRI | GGCC | 4 cut(s) | 25, 47, 82, 119 |
| BtsCI | GGATG | 1 cut(s) | 262 |
| BtsI | GCAGTG | 1 cut(s) | 38 |
| BtsIMutI | CAGTG | 1 cut(s) | 38 |
| BveI | ACCTGC | 1 cut(s) | 349 |
| Cac8I | GCNNGC | 2 cut(s) | 45, 142 |
| Cfr10I | RCCGGY | 2 cut(s) | 43, 72 |
| Cfr13I | GGNCC | 1 cut(s) | 24 |
| CviJI | RGCY | 8 cut(s) | 25, 47, 76, 82, 119, 140, 144, 345 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 47, 76, 82, 119, 140, 144, 345 |
| DdeI | CTNAG | 2 cut(s) | 77, 354 |
| DpnI | GATC | 1 cut(s) | 261 |
| DpnII | GATC | 1 cut(s) | 259 |
| DraIII | CACNNNGTG | 1 cut(s) | 296 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 13 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 13 |
| EaeI | YGGCCR | 1 cut(s) | 45 |
| Eco147I | AGGCCT | 1 cut(s) | 82 |
| Eco57I | CTGAAG | 1 cut(s) | 326 |
| EcoRII | CCWGG | 1 cut(s) | 265 |
| Esp3I | CGTCTC | 1 cut(s) | 231 |
| FaiI | YATR | 4 cut(s) | 93, 147, 189, 333 |
| FaqI | GGGAC | 2 cut(s) | 49, 185 |
| FbaI | TGATCA | 1 cut(s) | 259 |
| Fnu4HI | GCNGC | 2 cut(s) | 324, 343 |
| FokI | GGATG | 1 cut(s) | 249 |
| Fsp4HI | GCNGC | 2 cut(s) | 324, 343 |
| FspBI | CTAG | 1 cut(s) | 227 |
| GluI | GCNGC | 2 cut(s) | 324, 343 |
| HaeIII | GGCC | 4 cut(s) | 25, 47, 82, 119 |
| HapII | CCGG | 2 cut(s) | 44, 73 |
| HinfI | GANTC | 1 cut(s) | 352 |
| HpaII | CCGG | 2 cut(s) | 44, 73 |
| HphI | GGTGA | 1 cut(s) | 308 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188III | TCNNGA | 1 cut(s) | 378 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| HpyAV | CCTTC | 1 cut(s) | 130 |
| HpyCH4III | ACNGT | 2 cut(s) | 199, 249 |
| HpyCH4V | TGCA | 3 cut(s) | 101, 326, 342 |
| HpyF3I | CTNAG | 2 cut(s) | 77, 354 |
| KroI | GCCGGC | 1 cut(s) | 43 |
| KroNI | GCCGGC | 1 cut(s) | 45 |
| Ksp22I | TGATCA | 1 cut(s) | 259 |
| Kzo9I | GATC | 1 cut(s) | 259 |
| LmnI | GCTCC | 1 cut(s) | 350 |
| LpnPI | CCDG | 9 cut(s) | 40, 57, 86, 154, 186, 252, 278, 279, 344 |
| Lsp1109I | GCAGC | 2 cut(s) | 310, 354 |
| MaeI | CTAG | 1 cut(s) | 227 |
| MalI | GATC | 1 cut(s) | 261 |
| MboI | GATC | 1 cut(s) | 259 |
| MboII | GAAGA | 3 cut(s) | 74, 319, 322 |
| MfeI | CAATTG | 2 cut(s) | 204, 315 |
| MluCI | AATT | 5 cut(s) | 176, 204, 315, 363, 372 |
| MlyI | GAGTC | 1 cut(s) | 346 |
| MnlI | CCTC | 5 cut(s) | 72, 89, 93, 174, 292 |
| MroNI | GCCGGC | 1 cut(s) | 43 |
| MseI | TTAA | 1 cut(s) | 371 |
| MslI | CAYNNNNRTG | 1 cut(s) | 267 |
| MspI | CCGG | 2 cut(s) | 44, 73 |
| MspR9I | CCNGG | 1 cut(s) | 267 |
| MunI | CAATTG | 2 cut(s) | 204, 315 |
| MvaI | CCWGG | 1 cut(s) | 267 |
| NaeI | GCCGGC | 1 cut(s) | 45 |
| NdeII | GATC | 1 cut(s) | 259 |
| NgoMIV | GCCGGC | 1 cut(s) | 43 |
| PceI | AGGCCT | 1 cut(s) | 82 |
| PdiI | GCCGGC | 1 cut(s) | 45 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 165 |
| PkrI | GCNGC | 2 cut(s) | 325, 344 |
| PleI | GAGTC | 1 cut(s) | 346 |
| PpsI | GAGTC | 1 cut(s) | 346 |
| Psp6I | CCWGG | 1 cut(s) | 265 |
| PspGI | CCWGG | 1 cut(s) | 265 |
| PspPI | GGNCC | 1 cut(s) | 24 |
| PstI | CTGCAG | 1 cut(s) | 328 |
| RseI | CAYNNNNRTG | 1 cut(s) | 267 |
| SaqAI | TTAA | 1 cut(s) | 371 |
| SatI | GCNGC | 2 cut(s) | 324, 343 |
| Sau3AI | GATC | 1 cut(s) | 259 |
| Sau96I | GGNCC | 1 cut(s) | 24 |
| SchI | GAGTC | 1 cut(s) | 346 |
| ScrFI | CCNGG | 1 cut(s) | 267 |
| SetI | ASST | 5 cut(s) | 100, 146, 175, 347, 363 |
| SfcI | CTRYAG | 2 cut(s) | 91, 324 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 267 |
| Sse9I | AATT | 5 cut(s) | 176, 204, 315, 363, 372 |
| SseBI | AGGCCT | 1 cut(s) | 82 |
| SspI | AATATT | 1 cut(s) | 154 |
| SspMI | CTAG | 1 cut(s) | 227 |
| StuI | AGGCCT | 1 cut(s) | 82 |
| StyD4I | CCNGG | 1 cut(s) | 265 |
| TaaI | ACNGT | 2 cut(s) | 199, 249 |
| TasI | AATT | 5 cut(s) | 176, 204, 315, 363, 372 |
| Tru1I | TTAA | 1 cut(s) | 371 |
| Tru9I | TTAA | 1 cut(s) | 371 |
| TscAI | CASTG | 1 cut(s) | 45 |
| TseI | GCWGC | 2 cut(s) | 323, 342 |
| TspDTI | ATGAA | 1 cut(s) | 162 |
| TspGWI | ACGGA | 1 cut(s) | 23 |
| TspRI | CASTG | 1 cut(s) | 45 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 165 |
| XspI | CTAG | 1 cut(s) | 227 |