Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 517 |
| AciI | CCGC | 1 cut(s) | 323 |
| AcsI | RAATTY | 1 cut(s) | 116 |
| AfaI | GTAC | 5 cut(s) | 12, 336, 559, 565, 599 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 236, 364 |
| AflII | CTTAAG | 1 cut(s) | 400 |
| AgsI | TTSAA | 2 cut(s) | 247, 353 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 204 |
| AhlI | ACTAGT | 1 cut(s) | 560 |
| AluBI | AGCT | 3 cut(s) | 266, 458, 488 |
| AluI | AGCT | 3 cut(s) | 266, 458, 488 |
| Alw26I | GTCTC | 1 cut(s) | 217 |
| Ama87I | CYCGRG | 1 cut(s) | 567 |
| ApeKI | GCWGC | 1 cut(s) | 40 |
| ApoI | RAATTY | 1 cut(s) | 116 |
| AseI | ATTAAT | 1 cut(s) | 618 |
| AsuHPI | GGTGA | 1 cut(s) | 584 |
| AvaI | CYCGRG | 1 cut(s) | 567 |
| AxyI | CCTNAGG | 1 cut(s) | 186 |
| BanI | GGYRCC | 1 cut(s) | 517 |
| BbsI | GAAGAC | 1 cut(s) | 360 |
| BbvI | GCAGC | 1 cut(s) | 52 |
| BciVI | GTATCC | 1 cut(s) | 271 |
| BcoDI | GTCTC | 1 cut(s) | 217 |
| BcuI | ACTAGT | 1 cut(s) | 560 |
| BfaI | CTAG | 2 cut(s) | 480, 561 |
| BfrI | CTTAAG | 1 cut(s) | 400 |
| BfuI | GTATCC | 1 cut(s) | 271 |
| BisI | GCNGC | 1 cut(s) | 41 |
| BlpI | GCTNAGC | 1 cut(s) | 633 |
| BlsI | GCNGC | 1 cut(s) | 42 |
| BmcAI | AGTACT | 1 cut(s) | 565 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 204 |
| BmeT110I | CYCGRG | 1 cut(s) | 567 |
| BmiI | GGNNCC | 1 cut(s) | 519 |
| BmrI | ACTGGG | 1 cut(s) | 636 |
| BmsI | GCATC | 1 cut(s) | 155 |
| BmuI | ACTGGG | 1 cut(s) | 636 |
| BpiI | GAAGAC | 1 cut(s) | 360 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 633 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 236, 364 |
| Bse1I | ACTGG | 1 cut(s) | 642 |
| Bse21I | CCTNAGG | 1 cut(s) | 186 |
| BseGI | GGATG | 3 cut(s) | 146, 226, 541 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 236, 364 |
| BseMII | CTCAG | 1 cut(s) | 624 |
| BseNI | ACTGG | 1 cut(s) | 642 |
| BseXI | GCAGC | 1 cut(s) | 52 |
| BshNI | GGYRCC | 1 cut(s) | 517 |
| BsiHKCI | CYCGRG | 1 cut(s) | 567 |
| BslFI | GGGAC | 1 cut(s) | 571 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 236, 364 |
| BsmAI | GTCTC | 1 cut(s) | 217 |
| BsmFI | GGGAC | 1 cut(s) | 571 |
| BsmI | GAATGC | 1 cut(s) | 325 |
| BsoBI | CYCGRG | 1 cut(s) | 567 |
| Bsp1407I | TGTACA | 1 cut(s) | 597 |
| Bsp143I | GATC | 1 cut(s) | 99 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 633 |
| BspACI | CCGC | 1 cut(s) | 323 |
| BspCNI | CTCAG | 1 cut(s) | 625 |
| BspLI | GGNNCC | 1 cut(s) | 519 |
| BspT107I | GGYRCC | 1 cut(s) | 517 |
| BspTI | CTTAAG | 1 cut(s) | 400 |
| BsrGI | TGTACA | 1 cut(s) | 597 |
| BsrI | ACTGG | 1 cut(s) | 642 |
| BssMI | GATC | 1 cut(s) | 99 |
| Bst4CI | ACNGT | 1 cut(s) | 334 |
| Bst6I | CTCTTC | 2 cut(s) | 20, 507 |
| BstAFI | CTTAAG | 1 cut(s) | 400 |
| BstAUI | TGTACA | 1 cut(s) | 597 |
| BstDEI | CTNAG | 2 cut(s) | 186, 633 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 362 |
| BstF5I | GGATG | 3 cut(s) | 146, 226, 541 |
| BstKTI | GATC | 1 cut(s) | 102 |
| BstMAI | GTCTC | 1 cut(s) | 217 |
| BstMBI | GATC | 1 cut(s) | 99 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 485 |
| BstV1I | GCAGC | 1 cut(s) | 52 |
| BstV2I | GAAGAC | 1 cut(s) | 360 |
| Bsu36I | CCTNAGG | 1 cut(s) | 186 |
| BsuI | GTATCC | 1 cut(s) | 271 |
| BtsCI | GGATG | 3 cut(s) | 146, 226, 541 |
| CseI | GACGC | 1 cut(s) | 478 |
| Csp6I | GTAC | 5 cut(s) | 11, 335, 558, 564, 598 |
| CviAII | CATG | 2 cut(s) | 209, 274 |
| CviJI | RGCY | 7 cut(s) | 184, 266, 407, 458, 488, 632, 637 |
| CviKI_1 | RGCY | 7 cut(s) | 184, 266, 407, 458, 488, 632, 637 |
| CviQI | GTAC | 5 cut(s) | 11, 335, 558, 564, 598 |
| DdeI | CTNAG | 2 cut(s) | 186, 633 |
| DpnI | GATC | 1 cut(s) | 101 |
| DpnII | GATC | 1 cut(s) | 99 |
| DriI | GACNNNNNGTC | 1 cut(s) | 204 |
| Eam1104I | CTCTTC | 2 cut(s) | 20, 507 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 204 |
| EarI | CTCTTC | 2 cut(s) | 20, 507 |
| Eco81I | CCTNAGG | 1 cut(s) | 186 |
| Eco88I | CYCGRG | 1 cut(s) | 567 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 362 |
| FaeI | CATG | 2 cut(s) | 212, 277 |
| FaqI | GGGAC | 1 cut(s) | 571 |
| FatI | CATG | 2 cut(s) | 208, 273 |
| Fnu4HI | GCNGC | 1 cut(s) | 41 |
| FokI | GGATG | 3 cut(s) | 133, 213, 548 |
| Fsp4HI | GCNGC | 1 cut(s) | 41 |
| FspBI | CTAG | 2 cut(s) | 480, 561 |
| GluI | GCNGC | 1 cut(s) | 41 |
| HgaI | GACGC | 1 cut(s) | 478 |
| Hin1II | CATG | 2 cut(s) | 212, 277 |
| HinfI | GANTC | 2 cut(s) | 214, 551 |
| HphI | GGTGA | 1 cut(s) | 584 |
| Hpy166II | GTNNAC | 2 cut(s) | 178, 425 |
| Hpy188I | TCNGA | 1 cut(s) | 364 |
| Hpy188III | TCNNGA | 6 cut(s) | 58, 103, 150, 158, 440, 533 |
| Hpy8I | GTNNAC | 2 cut(s) | 178, 425 |
| Hpy99I | CGWCG | 1 cut(s) | 202 |
| HpyAV | CCTTC | 2 cut(s) | 100, 569 |
| HpyCH4III | ACNGT | 1 cut(s) | 334 |
| HpyCH4IV | ACGT | 1 cut(s) | 205 |
| HpyCH4V | TGCA | 1 cut(s) | 32 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 485 |
| HpyF3I | CTNAG | 2 cut(s) | 186, 633 |
| HpySE526I | ACGT | 1 cut(s) | 205 |
| Hsp92II | CATG | 2 cut(s) | 212, 277 |
| Kzo9I | GATC | 1 cut(s) | 99 |
| LmnI | GCTCC | 1 cut(s) | 263 |
| LpnPI | CCDG | 6 cut(s) | 88, 163, 267, 371, 518, 534 |
| Lsp1109I | GCAGC | 1 cut(s) | 52 |
| LweI | GCATC | 1 cut(s) | 155 |
| MaeI | CTAG | 2 cut(s) | 480, 561 |
| MaeII | ACGT | 1 cut(s) | 205 |
| MaeIII | GTNAC | 2 cut(s) | 211, 328 |
| MalI | GATC | 1 cut(s) | 101 |
| MboI | GATC | 1 cut(s) | 99 |
| MboII | GAAGA | 4 cut(s) | 37, 365, 524, 603 |
| MluCI | AATT | 2 cut(s) | 116, 126 |
| MlyI | GAGTC | 1 cut(s) | 208 |
| MmeI | TCCRAC | 1 cut(s) | 200 |
| MseI | TTAA | 4 cut(s) | 120, 252, 401, 618 |
| MspCI | CTTAAG | 1 cut(s) | 400 |
| Mva1269I | GAATGC | 1 cut(s) | 325 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 485 |
| NdeII | GATC | 1 cut(s) | 99 |
| NlaIII | CATG | 2 cut(s) | 212, 277 |
| NlaIV | GGNNCC | 1 cut(s) | 519 |
| NmuCI | GTSAC | 1 cut(s) | 211 |
| PaeR7I | CTCGAG | 1 cut(s) | 567 |
| PctI | GAATGC | 1 cut(s) | 325 |
| PfeI | GAWTC | 1 cut(s) | 551 |
| PkrI | GCNGC | 1 cut(s) | 42 |
| PleI | GAGTC | 1 cut(s) | 208 |
| PpsI | GAGTC | 1 cut(s) | 208 |
| PshBI | ATTAAT | 1 cut(s) | 618 |
| PspN4I | GGNNCC | 1 cut(s) | 519 |
| PspXI | VCTCGAGB | 1 cut(s) | 567 |
| RsaI | GTAC | 5 cut(s) | 12, 336, 559, 565, 599 |
| RsaNI | GTAC | 5 cut(s) | 11, 335, 558, 564, 598 |
| SaqAI | TTAA | 4 cut(s) | 120, 252, 401, 618 |
| SatI | GCNGC | 1 cut(s) | 41 |
| Sau3AI | GATC | 1 cut(s) | 99 |
| ScaI | AGTACT | 1 cut(s) | 565 |
| SchI | GAGTC | 1 cut(s) | 208 |
| SfaNI | GCATC | 1 cut(s) | 155 |
| Sfr274I | CTCGAG | 1 cut(s) | 567 |
| SlaI | CTCGAG | 1 cut(s) | 567 |
| SmlI | CTYRAG | 2 cut(s) | 400, 567 |
| SmoI | CTYRAG | 2 cut(s) | 400, 567 |
| SpeI | ACTAGT | 1 cut(s) | 560 |
| Sse9I | AATT | 2 cut(s) | 116, 126 |
| SsiI | CCGC | 1 cut(s) | 323 |
| SspI | AATATT | 2 cut(s) | 376, 625 |
| SspMI | CTAG | 2 cut(s) | 480, 561 |
| TaaI | ACNGT | 1 cut(s) | 334 |
| TaiI | ACGT | 1 cut(s) | 208 |
| TaqI | TCGA | 1 cut(s) | 568 |
| TasI | AATT | 2 cut(s) | 116, 126 |
| TatI | WGTACW | 4 cut(s) | 334, 557, 563, 597 |
| TfiI | GAWTC | 1 cut(s) | 551 |
| Tru1I | TTAA | 4 cut(s) | 120, 252, 401, 618 |
| Tru9I | TTAA | 4 cut(s) | 120, 252, 401, 618 |
| TseFI | GTSAC | 1 cut(s) | 211 |
| TseI | GCWGC | 1 cut(s) | 40 |
| Tsp45I | GTSAC | 1 cut(s) | 211 |
| TspDTI | ATGAA | 2 cut(s) | 38, 401 |
| Vha464I | CTTAAG | 1 cut(s) | 400 |
| VspI | ATTAAT | 1 cut(s) | 618 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 362 |
| XapI | RAATTY | 1 cut(s) | 116 |
| XhoI | CTCGAG | 1 cut(s) | 567 |
| XspI | CTAG | 2 cut(s) | 480, 561 |
| ZrmI | AGTACT | 1 cut(s) | 565 |