Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 856 |
| AcsI | RAATTY | 2 cut(s) | 112, 437 |
| AcyI | GRCGYC | 1 cut(s) | 807 |
| AfaI | GTAC | 1 cut(s) | 913 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 58, 509, 513 |
| AflIII | ACRYGT | 1 cut(s) | 184 |
| AgsI | TTSAA | 2 cut(s) | 16, 394 |
| AjiI | CACGTC | 2 cut(s) | 311, 860 |
| AjnI | CCWGG | 1 cut(s) | 809 |
| AluBI | AGCT | 4 cut(s) | 44, 198, 329, 639 |
| AluI | AGCT | 4 cut(s) | 44, 198, 329, 639 |
| Alw26I | GTCTC | 3 cut(s) | 115, 579, 857 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 176, 614 |
| Ama87I | CYCGRG | 1 cut(s) | 669 |
| ApeKI | GCWGC | 5 cut(s) | 468, 608, 619, 665, 674 |
| ApoI | RAATTY | 2 cut(s) | 112, 437 |
| AseI | ATTAAT | 1 cut(s) | 744 |
| AspA2I | CCTAGG | 1 cut(s) | 550 |
| AspLEI | GCGC | 1 cut(s) | 619 |
| AspS9I | GGNCC | 1 cut(s) | 250 |
| AsuHPI | GGTGA | 1 cut(s) | 73 |
| AsuNHI | GCTAGC | 1 cut(s) | 227 |
| AvaI | CYCGRG | 1 cut(s) | 669 |
| AvaII | GGWCC | 1 cut(s) | 250 |
| AvrII | CCTAGG | 1 cut(s) | 550 |
| BbvI | GCAGC | 5 cut(s) | 480, 606, 620, 652, 686 |
| BccI | CCATC | 3 cut(s) | 507, 527, 730 |
| BciT130I | CCWGG | 1 cut(s) | 811 |
| BclI | TGATCA | 1 cut(s) | 132 |
| BcoDI | GTCTC | 3 cut(s) | 115, 579, 857 |
| BfaI | CTAG | 5 cut(s) | 204, 228, 326, 551, 981 |
| BfmI | CTRYAG | 1 cut(s) | 620 |
| BisI | GCNGC | 5 cut(s) | 469, 609, 620, 666, 675 |
| BlnI | CCTAGG | 1 cut(s) | 550 |
| BlsI | GCNGC | 5 cut(s) | 470, 610, 621, 667, 676 |
| Bme1390I | CCNGG | 1 cut(s) | 811 |
| Bme18I | GGWCC | 1 cut(s) | 250 |
| BmeT110I | CYCGRG | 1 cut(s) | 669 |
| BmgBI | CACGTC | 2 cut(s) | 311, 860 |
| BmgT120I | GGNCC | 1 cut(s) | 250 |
| BmiI | GGNNCC | 1 cut(s) | 936 |
| BmrFI | CCNGG | 1 cut(s) | 811 |
| BmsI | GCATC | 3 cut(s) | 82, 133, 718 |
| BmtI | GCTAGC | 1 cut(s) | 231 |
| BoxI | GACNNNNGTC | 1 cut(s) | 552 |
| BpuEI | CTTGAG | 1 cut(s) | 262 |
| BsaAI | YACGTR | 1 cut(s) | 692 |
| BsaHI | GRCGYC | 1 cut(s) | 807 |
| BsaJI | CCNNGG | 2 cut(s) | 507, 550 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 31, 61, 70, 100 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 58, 509, 513 |
| Bse1I | ACTGG | 2 cut(s) | 151, 309 |
| Bse3DI | GCAATG | 2 cut(s) | 738, 784 |
| BseBI | CCWGG | 1 cut(s) | 811 |
| BseDI | CCNNGG | 2 cut(s) | 507, 550 |
| BseGI | GGATG | 3 cut(s) | 10, 518, 550 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 58, 509, 513 |
| BseMI | GCAATG | 2 cut(s) | 738, 784 |
| BseNI | ACTGG | 2 cut(s) | 151, 309 |
| BseXI | GCAGC | 5 cut(s) | 480, 606, 620, 652, 686 |
| BsgI | GTGCAG | 1 cut(s) | 740 |
| BsiHKCI | CYCGRG | 1 cut(s) | 669 |
| BslFI | GGGAC | 2 cut(s) | 35, 611 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 58, 509, 513 |
| BsmAI | GTCTC | 3 cut(s) | 115, 579, 857 |
| BsmBI | CGTCTC | 3 cut(s) | 115, 579, 857 |
| BsmFI | GGGAC | 2 cut(s) | 35, 611 |
| BsoBI | CYCGRG | 1 cut(s) | 669 |
| Bsp143I | GATC | 3 cut(s) | 132, 206, 322 |
| BspLI | GGNNCC | 1 cut(s) | 936 |
| BspMAI | CTGCAG | 1 cut(s) | 624 |
| BspOI | GCTAGC | 1 cut(s) | 231 |
| BsrDI | GCAATG | 2 cut(s) | 738, 784 |
| BsrI | ACTGG | 2 cut(s) | 151, 309 |
| BssECI | CCNNGG | 2 cut(s) | 507, 550 |
| BssMI | GATC | 3 cut(s) | 132, 206, 322 |
| BssNI | GRCGYC | 1 cut(s) | 807 |
| BssT1I | CCWWGG | 1 cut(s) | 550 |
| Bst2UI | CCWGG | 1 cut(s) | 811 |
| Bst4CI | ACNGT | 2 cut(s) | 178, 508 |
| BstACI | GRCGYC | 1 cut(s) | 807 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 614, 820 |
| BstBAI | YACGTR | 1 cut(s) | 692 |
| BstC8I | GCNNGC | 3 cut(s) | 148, 229, 888 |
| BstDSI | CCRYGG | 1 cut(s) | 507 |
| BstF5I | GGATG | 3 cut(s) | 10, 518, 550 |
| BstHHI | GCGC | 1 cut(s) | 619 |
| BstKTI | GATC | 3 cut(s) | 135, 209, 325 |
| BstMAI | GTCTC | 3 cut(s) | 115, 579, 857 |
| BstMBI | GATC | 3 cut(s) | 132, 206, 322 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 237, 614, 650, 671, 674, 820 |
| BstNI | CCWGG | 1 cut(s) | 811 |
| BstNSI | RCATGY | 1 cut(s) | 188 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 552 |
| BstSCI | CCNGG | 1 cut(s) | 809 |
| BstSFI | CTRYAG | 1 cut(s) | 620 |
| BstV1I | GCAGC | 5 cut(s) | 480, 606, 620, 652, 686 |
| BtgI | CCRYGG | 1 cut(s) | 507 |
| BtrI | CACGTC | 2 cut(s) | 311, 860 |
| BtsCI | GGATG | 3 cut(s) | 10, 518, 550 |
| BtsI | GCAGTG | 1 cut(s) | 612 |
| BtsIMutI | CAGTG | 1 cut(s) | 612 |
| Cac8I | GCNNGC | 3 cut(s) | 148, 229, 888 |
| CaiI | CAGNNNCTG | 2 cut(s) | 176, 614 |
| CfoI | GCGC | 1 cut(s) | 619 |
| Cfr13I | GGNCC | 1 cut(s) | 250 |
| CpoI | CGGWCCG | 1 cut(s) | 250 |
| CseI | GACGC | 2 cut(s) | 201, 815 |
| Csp6I | GTAC | 1 cut(s) | 912 |
| CspI | CGGWCCG | 1 cut(s) | 250 |
| CviAII | CATG | 4 cut(s) | 185, 263, 426, 924 |
| CviQI | GTAC | 1 cut(s) | 912 |
| DpnI | GATC | 3 cut(s) | 134, 208, 324 |
| DpnII | GATC | 3 cut(s) | 132, 206, 322 |
| Eco130I | CCWWGG | 1 cut(s) | 550 |
| Eco47I | GGWCC | 1 cut(s) | 250 |
| Eco88I | CYCGRG | 1 cut(s) | 669 |
| EcoRII | CCWGG | 1 cut(s) | 809 |
| EcoT14I | CCWWGG | 1 cut(s) | 550 |
| ErhI | CCWWGG | 1 cut(s) | 550 |
| Esp3I | CGTCTC | 3 cut(s) | 115, 579, 857 |
| FaeI | CATG | 4 cut(s) | 188, 266, 429, 927 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 584, 616 |
| FaqI | GGGAC | 2 cut(s) | 35, 611 |
| FatI | CATG | 4 cut(s) | 184, 262, 425, 923 |
| FauNDI | CATATG | 2 cut(s) | 21, 218 |
| FbaI | TGATCA | 1 cut(s) | 132 |
| FblI | GTMKAC | 1 cut(s) | 856 |
| Fnu4HI | GCNGC | 5 cut(s) | 469, 609, 620, 666, 675 |
| FokI | GGATG | 3 cut(s) | 17, 525, 557 |
| Fsp4HI | GCNGC | 5 cut(s) | 469, 609, 620, 666, 675 |
| FspBI | CTAG | 5 cut(s) | 204, 228, 326, 551, 981 |
| GlaI | GCGC | 1 cut(s) | 618 |
| GluI | GCNGC | 5 cut(s) | 469, 609, 620, 666, 675 |
| HgaI | GACGC | 2 cut(s) | 201, 815 |
| HhaI | GCGC | 1 cut(s) | 619 |
| Hin1I | GRCGYC | 1 cut(s) | 807 |
| Hin1II | CATG | 4 cut(s) | 188, 266, 429, 927 |
| Hin6I | GCGC | 1 cut(s) | 617 |
| HinP1I | GCGC | 1 cut(s) | 617 |
| HincII | GTYRAC | 1 cut(s) | 857 |
| HindII | GTYRAC | 1 cut(s) | 857 |
| HindIII | AAGCTT | 1 cut(s) | 196 |
| HinfI | GANTC | 6 cut(s) | 167, 270, 334, 394, 455, 918 |
| HphI | GGTGA | 1 cut(s) | 73 |
| Hpy166II | GTNNAC | 1 cut(s) | 857 |
| Hpy188I | TCNGA | 5 cut(s) | 172, 477, 629, 834, 943 |
| Hpy188III | TCNNGA | 1 cut(s) | 352 |
| Hpy8I | GTNNAC | 1 cut(s) | 857 |
| Hpy99I | CGWCG | 1 cut(s) | 861 |
| HpyAV | CCTTC | 6 cut(s) | 22, 378, 457, 586, 835, 948 |
| HpyCH4III | ACNGT | 2 cut(s) | 178, 508 |
| HpyCH4IV | ACGT | 5 cut(s) | 124, 310, 691, 848, 859 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 237, 614, 650, 671, 674, 820 |
| HpySE526I | ACGT | 5 cut(s) | 124, 310, 691, 848, 859 |
| Hsp92I | GRCGYC | 1 cut(s) | 807 |
| Hsp92II | CATG | 4 cut(s) | 188, 266, 429, 927 |
| HspAI | GCGC | 1 cut(s) | 617 |
| Ksp22I | TGATCA | 1 cut(s) | 132 |
| Kzo9I | GATC | 3 cut(s) | 132, 206, 322 |
| Lsp1109I | GCAGC | 5 cut(s) | 480, 606, 620, 652, 686 |
| LweI | GCATC | 3 cut(s) | 82, 133, 718 |
| MaeI | CTAG | 5 cut(s) | 204, 228, 326, 551, 981 |
| MaeII | ACGT | 5 cut(s) | 124, 310, 691, 848, 859 |
| MaeIII | GTNAC | 2 cut(s) | 300, 524 |
| MalI | GATC | 3 cut(s) | 134, 208, 324 |
| MboI | GATC | 3 cut(s) | 132, 206, 322 |
| MboII | GAAGA | 3 cut(s) | 76, 472, 737 |
| MluCI | AATT | 7 cut(s) | 112, 257, 437, 645, 657, 835, 948 |
| MlyI | GAGTC | 1 cut(s) | 449 |
| MmeI | TCCRAC | 1 cut(s) | 455 |
| MnlI | CCTC | 7 cut(s) | 72, 243, 283, 554, 623, 925, 961 |
| MseI | TTAA | 4 cut(s) | 194, 519, 744, 985 |
| MslI | CAYNNNNRTG | 1 cut(s) | 424 |
| MspR9I | CCNGG | 1 cut(s) | 811 |
| MvaI | CCWGG | 1 cut(s) | 811 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 237, 614, 650, 671, 674, 820 |
| NdeI | CATATG | 2 cut(s) | 21, 218 |
| NdeII | GATC | 3 cut(s) | 132, 206, 322 |
| NheI | GCTAGC | 1 cut(s) | 227 |
| NlaIII | CATG | 4 cut(s) | 188, 266, 429, 927 |
| NlaIV | GGNNCC | 1 cut(s) | 936 |
| NmeAIII | GCCGAG | 1 cut(s) | 620 |
| NspI | RCATGY | 1 cut(s) | 188 |
| PciI | ACATGT | 1 cut(s) | 184 |
| PfeI | GAWTC | 5 cut(s) | 167, 270, 334, 394, 918 |
| PkrI | GCNGC | 5 cut(s) | 470, 610, 621, 667, 676 |
| PleI | GAGTC | 1 cut(s) | 449 |
| PpsI | GAGTC | 1 cut(s) | 449 |
| Ppu21I | YACGTR | 1 cut(s) | 692 |
| PscI | ACATGT | 1 cut(s) | 184 |
| PshAI | GACNNNNGTC | 1 cut(s) | 552 |
| PshBI | ATTAAT | 1 cut(s) | 744 |
| Psp6I | CCWGG | 1 cut(s) | 809 |
| PspGI | CCWGG | 1 cut(s) | 809 |
| PspN4I | GGNNCC | 1 cut(s) | 936 |
| PspPI | GGNCC | 1 cut(s) | 250 |
| PstI | CTGCAG | 1 cut(s) | 624 |
| PstNI | CAGNNNCTG | 2 cut(s) | 176, 614 |
| RsaI | GTAC | 1 cut(s) | 913 |
| RsaNI | GTAC | 1 cut(s) | 912 |
| RseI | CAYNNNNRTG | 1 cut(s) | 424 |
| Rsr2I | CGGWCCG | 1 cut(s) | 250 |
| RsrII | CGGWCCG | 1 cut(s) | 250 |
| SalI | GTCGAC | 1 cut(s) | 855 |
| SaqAI | TTAA | 4 cut(s) | 194, 519, 744, 985 |
| SatI | GCNGC | 5 cut(s) | 469, 609, 620, 666, 675 |
| Sau3AI | GATC | 3 cut(s) | 132, 206, 322 |
| Sau96I | GGNCC | 1 cut(s) | 250 |
| SchI | GAGTC | 1 cut(s) | 449 |
| ScrFI | CCNGG | 1 cut(s) | 811 |
| SfaNI | GCATC | 3 cut(s) | 82, 133, 718 |
| SfcI | CTRYAG | 1 cut(s) | 620 |
| SinI | GGWCC | 1 cut(s) | 250 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 424 |
| SmlI | CTYRAG | 1 cut(s) | 241 |
| SmoI | CTYRAG | 1 cut(s) | 241 |
| Sse9I | AATT | 7 cut(s) | 112, 257, 437, 645, 657, 835, 948 |
| SspMI | CTAG | 5 cut(s) | 204, 228, 326, 551, 981 |
| StyD4I | CCNGG | 1 cut(s) | 809 |
| StyI | CCWWGG | 1 cut(s) | 550 |
| TaaI | ACNGT | 2 cut(s) | 178, 508 |
| TaiI | ACGT | 5 cut(s) | 127, 313, 694, 851, 862 |
| TaqI | TCGA | 4 cut(s) | 180, 458, 856, 916 |
| TaqII | GACCGA | 1 cut(s) | 267 |
| TasI | AATT | 7 cut(s) | 112, 257, 437, 645, 657, 835, 948 |
| TfiI | GAWTC | 5 cut(s) | 167, 270, 334, 394, 918 |
| Tru1I | TTAA | 4 cut(s) | 194, 519, 744, 985 |
| Tru9I | TTAA | 4 cut(s) | 194, 519, 744, 985 |
| TscAI | CASTG | 1 cut(s) | 619 |
| TseI | GCWGC | 5 cut(s) | 468, 608, 619, 665, 674 |
| TspGWI | ACGGA | 2 cut(s) | 263, 263 |
| TspRI | CASTG | 1 cut(s) | 619 |
| VpaK11BI | GGWCC | 1 cut(s) | 250 |
| VspI | ATTAAT | 1 cut(s) | 744 |
| XapI | RAATTY | 2 cut(s) | 112, 437 |
| XceI | RCATGY | 1 cut(s) | 188 |
| XmaJI | CCTAGG | 1 cut(s) | 550 |
| XmiI | GTMKAC | 1 cut(s) | 856 |
| XspI | CTAG | 5 cut(s) | 204, 228, 326, 551, 981 |