Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 346 |
| AciI | CCGC | 2 cut(s) | 84, 221 |
| AclWI | GGATC | 4 cut(s) | 140, 153, 419, 426 |
| AcoI | YGGCCR | 2 cut(s) | 201, 540 |
| AcuI | CTGAAG | 1 cut(s) | 423 |
| AfaI | GTAC | 1 cut(s) | 269 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 141, 264, 399 |
| AflIII | ACRYGT | 1 cut(s) | 98 |
| AgsI | TTSAA | 3 cut(s) | 29, 262, 521 |
| AluBI | AGCT | 3 cut(s) | 40, 52, 446 |
| AluI | AGCT | 3 cut(s) | 40, 52, 446 |
| Alw21I | GWGCWC | 2 cut(s) | 299, 367 |
| Alw44I | GTGCAC | 1 cut(s) | 363 |
| AlwI | GGATC | 4 cut(s) | 140, 153, 419, 426 |
| AoxI | GGCC | 2 cut(s) | 201, 540 |
| ApaLI | GTGCAC | 1 cut(s) | 363 |
| AspLEI | GCGC | 1 cut(s) | 347 |
| AspS9I | GGNCC | 3 cut(s) | 155, 223, 275 |
| AvaII | GGWCC | 3 cut(s) | 155, 223, 275 |
| BaeGI | GKGCMC | 1 cut(s) | 367 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 259, 292 |
| BalI | TGGCCA | 2 cut(s) | 203, 542 |
| BamHI | GGATCC | 1 cut(s) | 145 |
| Bbv12I | GWGCWC | 2 cut(s) | 299, 367 |
| BbvCI | CCTCAGC | 1 cut(s) | 130 |
| BccI | CCATC | 1 cut(s) | 212 |
| BclI | TGATCA | 1 cut(s) | 511 |
| BfaI | CTAG | 1 cut(s) | 192 |
| BfmI | CTRYAG | 1 cut(s) | 572 |
| Bme18I | GGWCC | 3 cut(s) | 155, 223, 275 |
| BmgT120I | GGNCC | 3 cut(s) | 155, 223, 275 |
| BmiI | GGNNCC | 3 cut(s) | 147, 189, 276 |
| Bpu10I | CCTNAGC | 1 cut(s) | 130 |
| BsaJI | CCNNGG | 2 cut(s) | 138, 543 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 141, 264, 399 |
| Bse1I | ACTGG | 1 cut(s) | 540 |
| BseDI | CCNNGG | 2 cut(s) | 138, 543 |
| BseGI | GGATG | 1 cut(s) | 389 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 141, 264, 399 |
| BseMII | CTCAG | 1 cut(s) | 144 |
| BseNI | ACTGG | 1 cut(s) | 540 |
| BseSI | GKGCMC | 1 cut(s) | 367 |
| BshFI | GGCC | 2 cut(s) | 203, 542 |
| BsiHKAI | GWGCWC | 2 cut(s) | 299, 367 |
| BslFI | GGGAC | 1 cut(s) | 47 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 141, 264, 399 |
| BsmFI | GGGAC | 1 cut(s) | 47 |
| BsnI | GGCC | 2 cut(s) | 203, 542 |
| Bsp1286I | GDGCHC | 2 cut(s) | 299, 367 |
| Bsp143I | GATC | 6 cut(s) | 6, 145, 245, 411, 418, 511 |
| BspACI | CCGC | 2 cut(s) | 84, 221 |
| BspANI | GGCC | 2 cut(s) | 203, 542 |
| BspCNI | CTCAG | 1 cut(s) | 143 |
| BspLI | GGNNCC | 3 cut(s) | 147, 189, 276 |
| BspPI | GGATC | 4 cut(s) | 140, 153, 419, 426 |
| BsrI | ACTGG | 1 cut(s) | 540 |
| BssECI | CCNNGG | 2 cut(s) | 138, 543 |
| BssMI | GATC | 6 cut(s) | 6, 145, 245, 411, 418, 511 |
| BssT1I | CCWWGG | 1 cut(s) | 543 |
| Bst4CI | ACNGT | 1 cut(s) | 491 |
| BstDEI | CTNAG | 3 cut(s) | 14, 130, 460 |
| BstDSI | CCRYGG | 1 cut(s) | 138 |
| BstF5I | GGATG | 1 cut(s) | 389 |
| BstHHI | GCGC | 1 cut(s) | 347 |
| BstKTI | GATC | 6 cut(s) | 9, 148, 248, 414, 421, 514 |
| BstMBI | GATC | 6 cut(s) | 6, 145, 245, 411, 418, 511 |
| BstNSI | RCATGY | 1 cut(s) | 102 |
| BstSFI | CTRYAG | 1 cut(s) | 572 |
| BstSLI | GKGCMC | 1 cut(s) | 367 |
| BstX2I | RGATCY | 2 cut(s) | 145, 411 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 550 |
| BstYI | RGATCY | 2 cut(s) | 145, 411 |
| BsuRI | GGCC | 2 cut(s) | 203, 542 |
| BtgI | CCRYGG | 1 cut(s) | 138 |
| BtsCI | GGATG | 1 cut(s) | 389 |
| BtsI | GCAGTG | 1 cut(s) | 290 |
| BtsIMutI | CAGTG | 2 cut(s) | 290, 533 |
| CfoI | GCGC | 1 cut(s) | 347 |
| Cfr13I | GGNCC | 3 cut(s) | 155, 223, 275 |
| Csp6I | GTAC | 1 cut(s) | 268 |
| CviAII | CATG | 5 cut(s) | 99, 305, 350, 515, 560 |
| CviQI | GTAC | 1 cut(s) | 268 |
| DdeI | CTNAG | 3 cut(s) | 14, 130, 460 |
| DpnI | GATC | 6 cut(s) | 8, 147, 247, 413, 420, 513 |
| DpnII | GATC | 6 cut(s) | 6, 145, 245, 411, 418, 511 |
| EaeI | YGGCCR | 2 cut(s) | 201, 540 |
| Eco130I | CCWWGG | 1 cut(s) | 543 |
| Eco47I | GGWCC | 3 cut(s) | 155, 223, 275 |
| Eco57I | CTGAAG | 1 cut(s) | 423 |
| EcoO109I | RGGNCCY | 1 cut(s) | 275 |
| EcoT14I | CCWWGG | 1 cut(s) | 543 |
| ErhI | CCWWGG | 1 cut(s) | 543 |
| FaeI | CATG | 5 cut(s) | 102, 308, 353, 518, 563 |
| FaqI | GGGAC | 1 cut(s) | 47 |
| FatI | CATG | 5 cut(s) | 98, 304, 349, 514, 559 |
| FauNDI | CATATG | 1 cut(s) | 151 |
| FbaI | TGATCA | 1 cut(s) | 511 |
| FokI | GGATG | 1 cut(s) | 376 |
| FspBI | CTAG | 1 cut(s) | 192 |
| FspI | TGCGCA | 1 cut(s) | 346 |
| GlaI | GCGC | 1 cut(s) | 346 |
| HaeIII | GGCC | 2 cut(s) | 203, 542 |
| HhaI | GCGC | 1 cut(s) | 347 |
| Hin1II | CATG | 5 cut(s) | 102, 308, 353, 518, 563 |
| Hin6I | GCGC | 1 cut(s) | 345 |
| HinP1I | GCGC | 1 cut(s) | 345 |
| HindIII | AAGCTT | 2 cut(s) | 38, 444 |
| HinfI | GANTC | 1 cut(s) | 456 |
| Hpy166II | GTNNAC | 3 cut(s) | 226, 270, 365 |
| Hpy188I | TCNGA | 1 cut(s) | 442 |
| Hpy8I | GTNNAC | 3 cut(s) | 226, 270, 365 |
| HpyAV | CCTTC | 1 cut(s) | 447 |
| HpyCH4III | ACNGT | 1 cut(s) | 491 |
| HpyCH4V | TGCA | 2 cut(s) | 283, 365 |
| HpyF3I | CTNAG | 3 cut(s) | 14, 130, 460 |
| Hsp92II | CATG | 5 cut(s) | 102, 308, 353, 518, 563 |
| HspAI | GCGC | 1 cut(s) | 345 |
| Ksp22I | TGATCA | 1 cut(s) | 511 |
| Kzo9I | GATC | 6 cut(s) | 6, 145, 245, 411, 418, 511 |
| LpnPI | CCDG | 3 cut(s) | 170, 171, 521 |
| MaeI | CTAG | 1 cut(s) | 192 |
| MaeIII | GTNAC | 2 cut(s) | 101, 429 |
| MalI | GATC | 6 cut(s) | 8, 147, 247, 413, 420, 513 |
| MboI | GATC | 6 cut(s) | 6, 145, 245, 411, 418, 511 |
| MboII | GAAGA | 1 cut(s) | 575 |
| MflI | RGATCY | 2 cut(s) | 145, 411 |
| MhlI | GDGCHC | 2 cut(s) | 299, 367 |
| MlsI | TGGCCA | 2 cut(s) | 203, 542 |
| MluCI | AATT | 1 cut(s) | 118 |
| MluNI | TGGCCA | 2 cut(s) | 203, 542 |
| MlyI | GAGTC | 1 cut(s) | 450 |
| MmeI | TCCRAC | 2 cut(s) | 194, 380 |
| MnlI | CCTC | 5 cut(s) | 21, 139, 145, 210, 378 |
| Mox20I | TGGCCA | 2 cut(s) | 203, 542 |
| MscI | TGGCCA | 2 cut(s) | 203, 542 |
| Msp20I | TGGCCA | 2 cut(s) | 203, 542 |
| NdeI | CATATG | 1 cut(s) | 151 |
| NdeII | GATC | 6 cut(s) | 6, 145, 245, 411, 418, 511 |
| NlaIII | CATG | 5 cut(s) | 102, 308, 353, 518, 563 |
| NlaIV | GGNNCC | 3 cut(s) | 147, 189, 276 |
| NmeAIII | GCCGAG | 1 cut(s) | 93 |
| NmuCI | GTSAC | 2 cut(s) | 101, 429 |
| NsbI | TGCGCA | 1 cut(s) | 346 |
| NspI | RCATGY | 1 cut(s) | 102 |
| PciI | ACATGT | 1 cut(s) | 98 |
| PleI | GAGTC | 1 cut(s) | 450 |
| PpsI | GAGTC | 1 cut(s) | 450 |
| PpuMI | RGGWCCY | 1 cut(s) | 275 |
| PscI | ACATGT | 1 cut(s) | 98 |
| Psp5II | RGGWCCY | 1 cut(s) | 275 |
| PspN4I | GGNNCC | 3 cut(s) | 147, 189, 276 |
| PspPI | GGNCC | 3 cut(s) | 155, 223, 275 |
| PspPPI | RGGWCCY | 1 cut(s) | 275 |
| PsuI | RGATCY | 2 cut(s) | 145, 411 |
| RsaI | GTAC | 1 cut(s) | 269 |
| RsaNI | GTAC | 1 cut(s) | 268 |
| Sau3AI | GATC | 6 cut(s) | 6, 145, 245, 411, 418, 511 |
| Sau96I | GGNCC | 3 cut(s) | 155, 223, 275 |
| SchI | GAGTC | 1 cut(s) | 450 |
| SduI | GDGCHC | 2 cut(s) | 299, 367 |
| SetI | ASST | 6 cut(s) | 42, 54, 189, 370, 439, 448 |
| SfcI | CTRYAG | 1 cut(s) | 572 |
| SinI | GGWCC | 3 cut(s) | 155, 223, 275 |
| Sse9I | AATT | 1 cut(s) | 118 |
| SsiI | CCGC | 2 cut(s) | 84, 221 |
| SspMI | CTAG | 1 cut(s) | 192 |
| StyI | CCWWGG | 1 cut(s) | 543 |
| TaaI | ACNGT | 1 cut(s) | 491 |
| TaqI | TCGA | 2 cut(s) | 5, 54 |
| TaqII | GACCGA | 2 cut(s) | 64, 468 |
| TasI | AATT | 1 cut(s) | 118 |
| TscAI | CASTG | 2 cut(s) | 290, 540 |
| TseFI | GTSAC | 2 cut(s) | 101, 429 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 429 |
| TspDTI | ATGAA | 3 cut(s) | 366, 378, 576 |
| TspRI | CASTG | 2 cut(s) | 290, 540 |
| VneI | GTGCAC | 1 cut(s) | 363 |
| VpaK11BI | GGWCC | 3 cut(s) | 155, 223, 275 |
| XceI | RCATGY | 1 cut(s) | 102 |
| XspI | CTAG | 1 cut(s) | 192 |