Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 72 |
| Acc16I | TGCGCA | 1 cut(s) | 1473 |
| AccB1I | GGYRCC | 1 cut(s) | 190 |
| AccII | CGCG | 1 cut(s) | 1509 |
| AciI | CCGC | 3 cut(s) | 650, 1179, 1507 |
| AclWI | GGATC | 7 cut(s) | 86, 714, 928, 935, 948, 1008, 1740 |
| AcoI | YGGCCR | 1 cut(s) | 387 |
| AcsI | RAATTY | 2 cut(s) | 552, 814 |
| AcuI | CTGAAG | 1 cut(s) | 986 |
| AcvI | CACGTG | 1 cut(s) | 1145 |
| AfaI | GTAC | 6 cut(s) | 26, 582, 1054, 1176, 1852, 1894 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 74, 991, 1091, 1219, 1433 |
| AgeI | ACCGGT | 1 cut(s) | 165 |
| AgsI | TTSAA | 7 cut(s) | 185, 487, 748, 1172, 1646, 1721, 1759 |
| AjiI | CACGTC | 1 cut(s) | 1198 |
| AjnI | CCWGG | 1 cut(s) | 1007 |
| Alw26I | GTCTC | 2 cut(s) | 660, 1402 |
| AlwI | GGATC | 7 cut(s) | 86, 714, 928, 935, 948, 1008, 1740 |
| Ama87I | CYCGRG | 3 cut(s) | 72, 310, 1398 |
| AoxI | GGCC | 5 cut(s) | 65, 387, 570, 921, 1005 |
| ApoI | RAATTY | 2 cut(s) | 552, 814 |
| AseI | ATTAAT | 1 cut(s) | 324 |
| AsiGI | ACCGGT | 1 cut(s) | 165 |
| AspLEI | GCGC | 1 cut(s) | 1474 |
| AspS9I | GGNCC | 2 cut(s) | 571, 922 |
| AsuC2I | CCSGG | 1 cut(s) | 938 |
| AsuHPI | GGTGA | 3 cut(s) | 101, 814, 1557 |
| AsuII | TTCGAA | 1 cut(s) | 280 |
| AvaI | CYCGRG | 3 cut(s) | 72, 310, 1398 |
| BalI | TGGCCA | 1 cut(s) | 389 |
| BamHI | GGATCC | 1 cut(s) | 940 |
| BanI | GGYRCC | 1 cut(s) | 190 |
| BauI | CACGAG | 1 cut(s) | 894 |
| BbrPI | CACGTG | 1 cut(s) | 1145 |
| BceAI | ACGGC | 1 cut(s) | 598 |
| BciT130I | CCWGG | 1 cut(s) | 1009 |
| BcnI | CCSGG | 1 cut(s) | 938 |
| BcoDI | GTCTC | 2 cut(s) | 660, 1402 |
| BfaI | CTAG | 2 cut(s) | 951, 1805 |
| BfmI | CTRYAG | 2 cut(s) | 329, 1214 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1552 |
| BglII | AGATCT | 1 cut(s) | 1040 |
| BlpI | GCTNAGC | 2 cut(s) | 779, 1706 |
| Bme1390I | CCNGG | 2 cut(s) | 938, 1009 |
| BmeT110I | CYCGRG | 3 cut(s) | 72, 310, 1398 |
| BmgBI | CACGTC | 1 cut(s) | 1198 |
| BmgT120I | GGNCC | 2 cut(s) | 571, 922 |
| BmiI | GGNNCC | 5 cut(s) | 192, 541, 924, 942, 1211 |
| BmrFI | CCNGG | 2 cut(s) | 938, 1009 |
| BmrI | ACTGGG | 1 cut(s) | 917 |
| BmsI | GCATC | 5 cut(s) | 765, 868, 1126, 1321, 1864 |
| BmuI | ACTGGG | 1 cut(s) | 917 |
| BpmI | CTGGAG | 2 cut(s) | 1030, 1649 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 779, 1706 |
| Bpu14I | TTCGAA | 1 cut(s) | 280 |
| BpuEI | CTTGAG | 2 cut(s) | 1252, 1413 |
| BpuMI | CCSGG | 1 cut(s) | 938 |
| Bsa29I | ATCGAT | 1 cut(s) | 932 |
| BsaAI | YACGTR | 2 cut(s) | 889, 1145 |
| BsaJI | CCNNGG | 1 cut(s) | 309 |
| BsaWI | WCCGGW | 1 cut(s) | 165 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1003, 1033, 1452, 1482, 1488, 1518 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 74, 991, 1091, 1219, 1433 |
| Bse118I | RCCGGY | 2 cut(s) | 165, 542 |
| Bse1I | ACTGG | 1 cut(s) | 912 |
| BseBI | CCWGG | 1 cut(s) | 1009 |
| BseCI | ATCGAT | 1 cut(s) | 932 |
| BseDI | CCNNGG | 1 cut(s) | 309 |
| BseGI | GGATG | 5 cut(s) | 744, 797, 1125, 1321, 1879 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 74, 991, 1091, 1219, 1433 |
| BseMII | CTCAG | 2 cut(s) | 1310, 1720 |
| BseNI | ACTGG | 1 cut(s) | 912 |
| BseRI | GAGGAG | 1 cut(s) | 60 |
| BsgI | GTGCAG | 2 cut(s) | 183, 1424 |
| Bsh1236I | CGCG | 1 cut(s) | 1509 |
| BshFI | GGCC | 5 cut(s) | 67, 389, 572, 923, 1007 |
| BshNI | GGYRCC | 1 cut(s) | 190 |
| BshTI | ACCGGT | 1 cut(s) | 165 |
| BshVI | ATCGAT | 1 cut(s) | 932 |
| BsiHKCI | CYCGRG | 3 cut(s) | 72, 310, 1398 |
| BsiSI | CCGG | 3 cut(s) | 166, 543, 938 |
| BslFI | GGGAC | 3 cut(s) | 327, 968, 1324 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 74, 991, 1091, 1219, 1433 |
| BsmAI | GTCTC | 2 cut(s) | 660, 1402 |
| BsmFI | GGGAC | 3 cut(s) | 327, 968, 1324 |
| BsmI | GAATGC | 1 cut(s) | 979 |
| BsnI | GGCC | 5 cut(s) | 67, 389, 572, 923, 1007 |
| BsoBI | CYCGRG | 3 cut(s) | 72, 310, 1398 |
| Bsp119I | TTCGAA | 1 cut(s) | 280 |
| Bsp143I | GATC | 9 cut(s) | 91, 342, 706, 933, 940, 1013, 1040, 1693, 1732 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 779, 1706 |
| BspACI | CCGC | 3 cut(s) | 650, 1179, 1507 |
| BspANI | GGCC | 5 cut(s) | 67, 389, 572, 923, 1007 |
| BspCNI | CTCAG | 2 cut(s) | 1309, 1719 |
| BspDI | ATCGAT | 1 cut(s) | 932 |
| BspFNI | CGCG | 1 cut(s) | 1509 |
| BspHI | TCATGA | 1 cut(s) | 594 |
| BspLI | GGNNCC | 5 cut(s) | 192, 541, 924, 942, 1211 |
| BspMAI | CTGCAG | 1 cut(s) | 333 |
| BspPI | GGATC | 7 cut(s) | 86, 714, 928, 935, 948, 1008, 1740 |
| BspQI | GCTCTTC | 1 cut(s) | 1005 |
| BspT104I | TTCGAA | 1 cut(s) | 280 |
| BspT107I | GGYRCC | 1 cut(s) | 190 |
| BsrFI | RCCGGY | 2 cut(s) | 165, 542 |
| BsrI | ACTGG | 1 cut(s) | 912 |
| BssAI | RCCGGY | 2 cut(s) | 165, 542 |
| BssECI | CCNNGG | 1 cut(s) | 309 |
| BssMI | GATC | 9 cut(s) | 91, 342, 706, 933, 940, 1013, 1040, 1693, 1732 |
| BssSI | CACGAG | 1 cut(s) | 894 |
| Bst2BI | CACGAG | 1 cut(s) | 894 |
| Bst2UI | CCWGG | 1 cut(s) | 1009 |
| Bst4CI | ACNGT | 7 cut(s) | 19, 236, 276, 580, 834, 982, 1218 |
| Bst6I | CTCTTC | 1 cut(s) | 1005 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 197 |
| BstBAI | YACGTR | 2 cut(s) | 889, 1145 |
| BstBI | TTCGAA | 1 cut(s) | 280 |
| BstC8I | GCNNGC | 2 cut(s) | 522, 1355 |
| BstDEI | CTNAG | 4 cut(s) | 533, 779, 1296, 1706 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 72, 1431 |
| BstF5I | GGATG | 5 cut(s) | 744, 797, 1125, 1321, 1879 |
| BstFNI | CGCG | 1 cut(s) | 1509 |
| BstHHI | GCGC | 1 cut(s) | 1474 |
| BstKTI | GATC | 9 cut(s) | 94, 345, 709, 936, 943, 1016, 1043, 1696, 1735 |
| BstMAI | GTCTC | 2 cut(s) | 660, 1402 |
| BstMBI | GATC | 9 cut(s) | 91, 342, 706, 933, 940, 1013, 1040, 1693, 1732 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 197, 1004, 1469, 1538, 1552, 1583, 1814 |
| BstNI | CCWGG | 1 cut(s) | 1009 |
| BstNSI | RCATGY | 2 cut(s) | 875, 1190 |
| BstSCI | CCNGG | 2 cut(s) | 936, 1007 |
| BstSFI | CTRYAG | 2 cut(s) | 329, 1214 |
| BstUI | CGCG | 1 cut(s) | 1509 |
| BstX2I | RGATCY | 3 cut(s) | 940, 1013, 1040 |
| BstYI | RGATCY | 3 cut(s) | 940, 1013, 1040 |
| Bsu15I | ATCGAT | 1 cut(s) | 932 |
| BsuRI | GGCC | 5 cut(s) | 67, 389, 572, 923, 1007 |
| BsuTUI | ATCGAT | 1 cut(s) | 932 |
| BtgZI | GCGATG | 1 cut(s) | 788 |
| BtrI | CACGTC | 1 cut(s) | 1198 |
| BtsCI | GGATG | 5 cut(s) | 744, 797, 1125, 1321, 1879 |
| BtsI | GCAGTG | 2 cut(s) | 1428, 1680 |
| BtsIMutI | CAGTG | 3 cut(s) | 573, 1428, 1680 |
| Cac8I | GCNNGC | 2 cut(s) | 522, 1355 |
| CciI | TCATGA | 1 cut(s) | 594 |
| CfoI | GCGC | 1 cut(s) | 1474 |
| Cfr10I | RCCGGY | 2 cut(s) | 165, 542 |
| Cfr13I | GGNCC | 2 cut(s) | 571, 922 |
| ClaI | ATCGAT | 1 cut(s) | 932 |
| CseI | GACGC | 1 cut(s) | 1645 |
| Csp6I | GTAC | 6 cut(s) | 25, 581, 1053, 1175, 1851, 1893 |
| CspAI | ACCGGT | 1 cut(s) | 165 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 489, 524, 1418, 1453 |
| CviAII | CATG | 9 cut(s) | 595, 872, 1097, 1183, 1187, 1514, 1574, 1691, 1736 |
| CviQI | GTAC | 6 cut(s) | 25, 581, 1053, 1175, 1851, 1893 |
| DdeI | CTNAG | 4 cut(s) | 533, 779, 1296, 1706 |
| DpnI | GATC | 9 cut(s) | 93, 344, 708, 935, 942, 1015, 1042, 1695, 1734 |
| DpnII | GATC | 9 cut(s) | 91, 342, 706, 933, 940, 1013, 1040, 1693, 1732 |
| DraI | TTTAAA | 1 cut(s) | 1728 |
| EaeI | YGGCCR | 1 cut(s) | 387 |
| Eam1104I | CTCTTC | 1 cut(s) | 1005 |
| EarI | CTCTTC | 1 cut(s) | 1005 |
| Eco147I | AGGCCT | 1 cut(s) | 1007 |
| Eco57I | CTGAAG | 1 cut(s) | 986 |
| Eco72I | CACGTG | 1 cut(s) | 1145 |
| Eco88I | CYCGRG | 3 cut(s) | 72, 310, 1398 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 72, 1431 |
| EcoRI | GAATTC | 1 cut(s) | 814 |
| EcoRII | CCWGG | 1 cut(s) | 1007 |
| EcoT22I | ATGCAT | 1 cut(s) | 1188 |
| FaeI | CATG | 9 cut(s) | 598, 875, 1100, 1186, 1190, 1517, 1577, 1694, 1739 |
| FaqI | GGGAC | 3 cut(s) | 327, 968, 1324 |
| FatI | CATG | 9 cut(s) | 594, 871, 1096, 1182, 1186, 1513, 1573, 1690, 1735 |
| FauI | CCCGC | 2 cut(s) | 643, 1186 |
| FauNDI | CATATG | 2 cut(s) | 298, 448 |
| FokI | GGATG | 5 cut(s) | 751, 804, 1112, 1308, 1886 |
| FspBI | CTAG | 2 cut(s) | 951, 1805 |
| FspI | TGCGCA | 1 cut(s) | 1473 |
| GlaI | GCGC | 1 cut(s) | 1473 |
| GsuI | CTGGAG | 2 cut(s) | 1030, 1649 |
| HaeIII | GGCC | 5 cut(s) | 67, 389, 572, 923, 1007 |
| HapII | CCGG | 3 cut(s) | 166, 543, 938 |
| HgaI | GACGC | 1 cut(s) | 1645 |
| HhaI | GCGC | 1 cut(s) | 1474 |
| Hin1II | CATG | 9 cut(s) | 598, 875, 1100, 1186, 1190, 1517, 1577, 1694, 1739 |
| Hin6I | GCGC | 1 cut(s) | 1472 |
| HinP1I | GCGC | 1 cut(s) | 1472 |
| HincII | GTYRAC | 2 cut(s) | 272, 1834 |
| HindII | GTYRAC | 2 cut(s) | 272, 1834 |
| HindIII | AAGCTT | 1 cut(s) | 840 |
| HinfI | GANTC | 3 cut(s) | 668, 808, 1624 |
| HpaII | CCGG | 3 cut(s) | 166, 543, 938 |
| HphI | GGTGA | 3 cut(s) | 101, 814, 1557 |
| Hpy166II | GTNNAC | 6 cut(s) | 272, 440, 1094, 1678, 1834, 1893 |
| Hpy188I | TCNGA | 6 cut(s) | 15, 248, 408, 673, 813, 1456 |
| Hpy188III | TCNNGA | 8 cut(s) | 160, 312, 595, 896, 951, 1628, 1718, 1859 |
| Hpy8I | GTNNAC | 6 cut(s) | 272, 440, 1094, 1678, 1834, 1893 |
| HpyAV | CCTTC | 5 cut(s) | 403, 499, 1301, 1592, 1627 |
| HpyCH4III | ACNGT | 7 cut(s) | 19, 236, 276, 580, 834, 982, 1218 |
| HpyCH4IV | ACGT | 3 cut(s) | 888, 1144, 1197 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 197, 1004, 1469, 1538, 1552, 1583, 1814 |
| HpyF3I | CTNAG | 4 cut(s) | 533, 779, 1296, 1706 |
| HpySE526I | ACGT | 3 cut(s) | 888, 1144, 1197 |
| Hsp92II | CATG | 9 cut(s) | 598, 875, 1100, 1186, 1190, 1517, 1577, 1694, 1739 |
| HspAI | GCGC | 1 cut(s) | 1472 |
| Kzo9I | GATC | 9 cut(s) | 91, 342, 706, 933, 940, 1013, 1040, 1693, 1732 |
| LguI | GCTCTTC | 1 cut(s) | 1005 |
| LmnI | GCTCC | 5 cut(s) | 539, 1215, 1460, 1777, 1861 |
| LweI | GCATC | 5 cut(s) | 765, 868, 1126, 1321, 1864 |
| MaeI | CTAG | 2 cut(s) | 951, 1805 |
| MaeII | ACGT | 3 cut(s) | 888, 1144, 1197 |
| MaeIII | GTNAC | 1 cut(s) | 428 |
| MalI | GATC | 9 cut(s) | 93, 344, 708, 935, 942, 1015, 1042, 1695, 1734 |
| MboI | GATC | 9 cut(s) | 91, 342, 706, 933, 940, 1013, 1040, 1693, 1732 |
| MboII | GAAGA | 7 cut(s) | 272, 275, 331, 817, 992, 1256, 1733 |
| MflI | RGATCY | 3 cut(s) | 940, 1013, 1040 |
| MlsI | TGGCCA | 1 cut(s) | 389 |
| MluNI | TGGCCA | 1 cut(s) | 389 |
| MlyI | GAGTC | 1 cut(s) | 662 |
| Mox20I | TGGCCA | 1 cut(s) | 389 |
| Mph1103I | ATGCAT | 1 cut(s) | 1188 |
| MscI | TGGCCA | 1 cut(s) | 389 |
| MslI | CAYNNNNRTG | 2 cut(s) | 876, 1326 |
| Msp20I | TGGCCA | 1 cut(s) | 389 |
| MspI | CCGG | 3 cut(s) | 166, 543, 938 |
| MspR9I | CCNGG | 2 cut(s) | 938, 1009 |
| Mva1269I | GAATGC | 1 cut(s) | 979 |
| MvaI | CCWGG | 1 cut(s) | 1009 |
| MvnI | CGCG | 1 cut(s) | 1509 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 197, 1004, 1469, 1538, 1552, 1583, 1814 |
| NciI | CCSGG | 1 cut(s) | 938 |
| NdeI | CATATG | 2 cut(s) | 298, 448 |
| NdeII | GATC | 9 cut(s) | 91, 342, 706, 933, 940, 1013, 1040, 1693, 1732 |
| NlaIII | CATG | 9 cut(s) | 598, 875, 1100, 1186, 1190, 1517, 1577, 1694, 1739 |
| NlaIV | GGNNCC | 5 cut(s) | 192, 541, 924, 942, 1211 |
| NmeAIII | GCCGAG | 1 cut(s) | 1603 |
| NsbI | TGCGCA | 1 cut(s) | 1473 |
| NsiI | ATGCAT | 1 cut(s) | 1188 |
| NspI | RCATGY | 2 cut(s) | 875, 1190 |
| NspV | TTCGAA | 1 cut(s) | 280 |
| PaeR7I | CTCGAG | 1 cut(s) | 72 |
| PagI | TCATGA | 1 cut(s) | 594 |
| PceI | AGGCCT | 1 cut(s) | 1007 |
| PciSI | GCTCTTC | 1 cut(s) | 1005 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 70 |
| PctI | GAATGC | 1 cut(s) | 979 |
| PfeI | GAWTC | 2 cut(s) | 808, 1624 |
| PfoI | TCCNGGA | 1 cut(s) | 936 |
| PinAI | ACCGGT | 1 cut(s) | 165 |
| PleI | GAGTC | 1 cut(s) | 662 |
| PmaCI | CACGTG | 1 cut(s) | 1145 |
| PmlI | CACGTG | 1 cut(s) | 1145 |
| PpsI | GAGTC | 1 cut(s) | 662 |
| Ppu21I | YACGTR | 2 cut(s) | 889, 1145 |
| PshBI | ATTAAT | 1 cut(s) | 324 |
| Psp6I | CCWGG | 1 cut(s) | 1007 |
| PspCI | CACGTG | 1 cut(s) | 1145 |
| PspGI | CCWGG | 1 cut(s) | 1007 |
| PspN4I | GGNNCC | 5 cut(s) | 192, 541, 924, 942, 1211 |
| PspPI | GGNCC | 2 cut(s) | 571, 922 |
| PspXI | VCTCGAGB | 1 cut(s) | 72 |
| PstI | CTGCAG | 1 cut(s) | 333 |
| PsuI | RGATCY | 3 cut(s) | 940, 1013, 1040 |
| RsaI | GTAC | 6 cut(s) | 26, 582, 1054, 1176, 1852, 1894 |
| RsaNI | GTAC | 6 cut(s) | 25, 581, 1053, 1175, 1851, 1893 |
| RseI | CAYNNNNRTG | 2 cut(s) | 876, 1326 |
| SapI | GCTCTTC | 1 cut(s) | 1005 |
| Sau3AI | GATC | 9 cut(s) | 91, 342, 706, 933, 940, 1013, 1040, 1693, 1732 |
| Sau96I | GGNCC | 2 cut(s) | 571, 922 |
| SchI | GAGTC | 1 cut(s) | 662 |
| ScrFI | CCNGG | 2 cut(s) | 938, 1009 |
| SfaNI | GCATC | 5 cut(s) | 765, 868, 1126, 1321, 1864 |
| SfcI | CTRYAG | 2 cut(s) | 329, 1214 |
| Sfr274I | CTCGAG | 1 cut(s) | 72 |
| SfuI | TTCGAA | 1 cut(s) | 280 |
| SlaI | CTCGAG | 1 cut(s) | 72 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 876, 1326 |
| SmlI | CTYRAG | 3 cut(s) | 72, 1231, 1428 |
| SmoI | CTYRAG | 3 cut(s) | 72, 1231, 1428 |
| SseBI | AGGCCT | 1 cut(s) | 1007 |
| SsiI | CCGC | 3 cut(s) | 650, 1179, 1507 |
| SspMI | CTAG | 2 cut(s) | 951, 1805 |
| StuI | AGGCCT | 1 cut(s) | 1007 |
| StyD4I | CCNGG | 2 cut(s) | 936, 1007 |
| TaaI | ACNGT | 7 cut(s) | 19, 236, 276, 580, 834, 982, 1218 |
| TaiI | ACGT | 3 cut(s) | 891, 1147, 1200 |
| TaqI | TCGA | 4 cut(s) | 73, 280, 414, 932 |
| TatI | WGTACW | 2 cut(s) | 1052, 1892 |
| TfiI | GAWTC | 2 cut(s) | 808, 1624 |
| TscAI | CASTG | 3 cut(s) | 573, 1428, 1680 |
| TspDTI | ATGAA | 6 cut(s) | 315, 611, 1114, 1637, 1701, 1730 |
| TspRI | CASTG | 3 cut(s) | 573, 1428, 1680 |
| VspI | ATTAAT | 1 cut(s) | 324 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 72, 1431 |
| XapI | RAATTY | 2 cut(s) | 552, 814 |
| XbaI | TCTAGA | 1 cut(s) | 950 |
| XceI | RCATGY | 2 cut(s) | 875, 1190 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1189, 1844 |
| XhoI | CTCGAG | 1 cut(s) | 72 |
| XspI | CTAG | 2 cut(s) | 951, 1805 |
| Zsp2I | ATGCAT | 1 cut(s) | 1188 |