ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1006 |
| AccI | GTMKAC | 1 cut(s) | 1600 |
| AccII | CGCG | 1 cut(s) | 228 |
| AccIII | TCCGGA | 1 cut(s) | 682 |
| AciI | CCGC | 5 cut(s) | 206, 556, 1006, 1324, 2039 |
| AcoI | YGGCCR | 1 cut(s) | 1459 |
| AcsI | RAATTY | 2 cut(s) | 86, 1049 |
| AcuI | CTGAAG | 1 cut(s) | 614 |
| AfaI | GTAC | 3 cut(s) | 172, 212, 994 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 55, 811, 914, 1457 |
| AflIII | ACRYGT | 1 cut(s) | 1132 |
| AjnI | CCWGG | 3 cut(s) | 49, 804, 2060 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1322, 1354 |
| AluBI | AGCT | 5 cut(s) | 449, 653, 735, 1637, 1861 |
| AluI | AGCT | 5 cut(s) | 449, 653, 735, 1637, 1861 |
| Alw21I | GWGCWC | 1 cut(s) | 1042 |
| Alw26I | GTCTC | 2 cut(s) | 1064, 1667 |
| Aor13HI | TCCGGA | 1 cut(s) | 682 |
| AoxI | GGCC | 4 cut(s) | 832, 1187, 1406, 1459 |
| ApaI | GGGCCC | 1 cut(s) | 1191 |
| ApeKI | GCWGC | 1 cut(s) | 1948 |
| ApoI | RAATTY | 2 cut(s) | 86, 1049 |
| AseI | ATTAAT | 2 cut(s) | 1200, 1773 |
| AspLEI | GCGC | 2 cut(s) | 230, 2023 |
| AspS9I | GGNCC | 4 cut(s) | 53, 832, 1187, 1188 |
| AsuC2I | CCSGG | 1 cut(s) | 415 |
| AsuHPI | GGTGA | 5 cut(s) | 175, 208, 548, 1872, 2008 |
| AsuII | TTCGAA | 1 cut(s) | 191 |
| AvaII | GGWCC | 1 cut(s) | 53 |
| BaeGI | GKGCMC | 1 cut(s) | 1191 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 162, 195 |
| BanII | GRGCYC | 1 cut(s) | 1191 |
| BbsI | GAAGAC | 1 cut(s) | 1587 |
| Bbv12I | GWGCWC | 1 cut(s) | 1042 |
| BbvI | GCAGC | 1 cut(s) | 1960 |
| BccI | CCATC | 8 cut(s) | 46, 53, 596, 861, 925, 1098, 1475, 1496 |
| BceAI | ACGGC | 2 cut(s) | 819, 1446 |
| BciT130I | CCWGG | 3 cut(s) | 51, 806, 2062 |
| BclI | TGATCA | 2 cut(s) | 949, 1261 |
| BcnI | CCSGG | 1 cut(s) | 415 |
| BcoDI | GTCTC | 2 cut(s) | 1064, 1667 |
| BfaI | CTAG | 5 cut(s) | 650, 699, 1455, 1638, 1734 |
| BfmI | CTRYAG | 2 cut(s) | 883, 1565 |
| BisI | GCNGC | 2 cut(s) | 206, 1949 |
| BlpI | GCTNAGC | 3 cut(s) | 654, 1625, 1803 |
| BlsI | GCNGC | 2 cut(s) | 207, 1950 |
| Bme1390I | CCNGG | 4 cut(s) | 51, 415, 806, 2062 |
| Bme18I | GGWCC | 1 cut(s) | 53 |
| BmgT120I | GGNCC | 4 cut(s) | 53, 832, 1187, 1188 |
| BmiI | GGNNCC | 4 cut(s) | 265, 1080, 1188, 1189 |
| BmrFI | CCNGG | 4 cut(s) | 51, 415, 806, 2062 |
| BmsI | GCATC | 4 cut(s) | 43, 495, 773, 1752 |
| BpiI | GAAGAC | 1 cut(s) | 1587 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 654, 1625, 1803 |
| Bpu14I | TTCGAA | 1 cut(s) | 191 |
| BpuEI | CTTGAG | 1 cut(s) | 746 |
| BpuMI | CCSGG | 1 cut(s) | 415 |
| Bsa29I | ATCGAT | 1 cut(s) | 865 |
| BsaJI | CCNNGG | 4 cut(s) | 49, 267, 835, 1191 |
| BsaWI | WCCGGW | 2 cut(s) | 55, 682 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 329, 359, 1322, 1352, 1729, 1759 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 55, 811, 914, 1457 |
| Bse118I | RCCGGY | 1 cut(s) | 1408 |
| Bse1I | ACTGG | 3 cut(s) | 220, 569, 1036 |
| BseAI | TCCGGA | 1 cut(s) | 682 |
| BseBI | CCWGG | 3 cut(s) | 51, 806, 2062 |
| BseCI | ATCGAT | 1 cut(s) | 865 |
| BseDI | CCNNGG | 4 cut(s) | 49, 267, 835, 1191 |
| BseGI | GGATG | 7 cut(s) | 10, 34, 64, 607, 961, 1109, 1987 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 55, 811, 914, 1457 |
| BseMII | CTCAG | 3 cut(s) | 135, 1616, 1794 |
| BseNI | ACTGG | 3 cut(s) | 220, 569, 1036 |
| BseRI | GAGGAG | 2 cut(s) | 161, 1524 |
| BseSI | GKGCMC | 1 cut(s) | 1191 |
| BseXI | GCAGC | 1 cut(s) | 1960 |
| BseYI | CCCAGC | 3 cut(s) | 1633, 1642, 1861 |
| Bsh1236I | CGCG | 1 cut(s) | 228 |
| BshFI | GGCC | 4 cut(s) | 834, 1189, 1408, 1461 |
| BshVI | ATCGAT | 1 cut(s) | 865 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1042 |
| BsiSI | CCGG | 4 cut(s) | 56, 414, 683, 1409 |
| BslFI | GGGAC | 2 cut(s) | 953, 1738 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 55, 811, 914, 1457 |
| BsmAI | GTCTC | 2 cut(s) | 1064, 1667 |
| BsmFI | GGGAC | 2 cut(s) | 953, 1738 |
| BsmI | GAATGC | 1 cut(s) | 1487 |
| BsnI | GGCC | 4 cut(s) | 834, 1189, 1408, 1461 |
| Bsp119I | TTCGAA | 1 cut(s) | 191 |
| Bsp120I | GGGCCC | 1 cut(s) | 1187 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1042, 1191 |
| Bsp13I | TCCGGA | 1 cut(s) | 682 |
| Bsp143I | GATC | 3 cut(s) | 862, 949, 1261 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 654, 1625, 1803 |
| Bsp19I | CCATGG | 1 cut(s) | 1191 |
| BspACI | CCGC | 5 cut(s) | 206, 556, 1006, 1324, 2039 |
| BspANI | GGCC | 4 cut(s) | 834, 1189, 1408, 1461 |
| BspCNI | CTCAG | 3 cut(s) | 136, 1617, 1795 |
| BspDI | ATCGAT | 1 cut(s) | 865 |
| BspEI | TCCGGA | 1 cut(s) | 682 |
| BspFNI | CGCG | 1 cut(s) | 228 |
| BspLI | GGNNCC | 4 cut(s) | 265, 1080, 1188, 1189 |
| BspQI | GCTCTTC | 1 cut(s) | 696 |
| BspT104I | TTCGAA | 1 cut(s) | 191 |
| BsrBI | CCGCTC | 1 cut(s) | 1006 |
| BsrFI | RCCGGY | 1 cut(s) | 1408 |
| BsrI | ACTGG | 3 cut(s) | 220, 569, 1036 |
| BssAI | RCCGGY | 1 cut(s) | 1408 |
| BssECI | CCNNGG | 4 cut(s) | 49, 267, 835, 1191 |
| BssMI | GATC | 3 cut(s) | 862, 949, 1261 |
| BssT1I | CCWWGG | 2 cut(s) | 267, 1191 |
| Bst2UI | CCWGG | 3 cut(s) | 51, 806, 2062 |
| Bst4CI | ACNGT | 1 cut(s) | 1338 |
| Bst6I | CTCTTC | 2 cut(s) | 696, 882 |
| BstBI | TTCGAA | 1 cut(s) | 191 |
| BstC8I | GCNNGC | 3 cut(s) | 1008, 1410, 1852 |
| BstDEI | CTNAG | 6 cut(s) | 144, 404, 640, 654, 1625, 1803 |
| BstDSI | CCRYGG | 2 cut(s) | 835, 1191 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 809 |
| BstF5I | GGATG | 7 cut(s) | 10, 34, 64, 607, 961, 1109, 1987 |
| BstFNI | CGCG | 1 cut(s) | 228 |
| BstHHI | GCGC | 2 cut(s) | 230, 2023 |
| BstKTI | GATC | 3 cut(s) | 865, 952, 1264 |
| BstMAI | GTCTC | 2 cut(s) | 1064, 1667 |
| BstMBI | GATC | 3 cut(s) | 862, 949, 1261 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 225, 664, 2020 |
| BstNI | CCWGG | 3 cut(s) | 51, 806, 2062 |
| BstNSI | RCATGY | 3 cut(s) | 628, 977, 1136 |
| BstSCI | CCNGG | 4 cut(s) | 49, 413, 804, 2060 |
| BstSFI | CTRYAG | 2 cut(s) | 883, 1565 |
| BstSLI | GKGCMC | 1 cut(s) | 1191 |
| BstUI | CGCG | 1 cut(s) | 228 |
| BstV1I | GCAGC | 1 cut(s) | 1960 |
| BstV2I | GAAGAC | 1 cut(s) | 1587 |
| Bsu15I | ATCGAT | 1 cut(s) | 865 |
| BsuRI | GGCC | 4 cut(s) | 834, 1189, 1408, 1461 |
| BsuTUI | ATCGAT | 1 cut(s) | 865 |
| BtgI | CCRYGG | 2 cut(s) | 835, 1191 |
| BtsCI | GGATG | 7 cut(s) | 10, 34, 64, 607, 961, 1109, 1987 |
| BtsI | GCAGTG | 3 cut(s) | 129, 444, 2021 |
| BtsIMutI | CAGTG | 5 cut(s) | 129, 444, 562, 858, 2021 |
| Cac8I | GCNNGC | 3 cut(s) | 1008, 1410, 1852 |
| CfoI | GCGC | 2 cut(s) | 230, 2023 |
| Cfr10I | RCCGGY | 1 cut(s) | 1408 |
| Cfr13I | GGNCC | 4 cut(s) | 53, 832, 1187, 1188 |
| ClaI | ATCGAT | 1 cut(s) | 865 |
| Csp6I | GTAC | 3 cut(s) | 171, 211, 993 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 512, 547 |
| CviQI | GTAC | 3 cut(s) | 171, 211, 993 |
| DdeI | CTNAG | 6 cut(s) | 144, 404, 640, 654, 1625, 1803 |
| DpnI | GATC | 3 cut(s) | 864, 951, 1263 |
| DpnII | GATC | 3 cut(s) | 862, 949, 1261 |
| DraI | TTTAAA | 1 cut(s) | 892 |
| EaeI | YGGCCR | 1 cut(s) | 1459 |
| Eam1104I | CTCTTC | 2 cut(s) | 696, 882 |
| EarI | CTCTTC | 2 cut(s) | 696, 882 |
| EciI | GGCGGA | 1 cut(s) | 571 |
| Eco130I | CCWWGG | 2 cut(s) | 267, 1191 |
| Eco24I | GRGCYC | 1 cut(s) | 1191 |
| Eco32I | GATATC | 1 cut(s) | 967 |
| Eco47I | GGWCC | 1 cut(s) | 53 |
| Eco57I | CTGAAG | 1 cut(s) | 614 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 809 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1187 |
| EcoRII | CCWGG | 3 cut(s) | 49, 804, 2060 |
| EcoRV | GATATC | 1 cut(s) | 967 |
| EcoT14I | CCWWGG | 2 cut(s) | 267, 1191 |
| EcoT22I | ATGCAT | 4 cut(s) | 36, 510, 630, 975 |
| EcoT38I | GRGCYC | 1 cut(s) | 1191 |
| ErhI | CCWWGG | 2 cut(s) | 267, 1191 |
| FaqI | GGGAC | 2 cut(s) | 953, 1738 |
| FauI | CCCGC | 1 cut(s) | 999 |
| FbaI | TGATCA | 2 cut(s) | 949, 1261 |
| FblI | GTMKAC | 1 cut(s) | 1600 |
| Fnu4HI | GCNGC | 2 cut(s) | 206, 1949 |
| FokI | GGATG | 7 cut(s) | 17, 21, 71, 614, 968, 1116, 1994 |
| FriOI | GRGCYC | 1 cut(s) | 1191 |
| Fsp4HI | GCNGC | 2 cut(s) | 206, 1949 |
| FspBI | CTAG | 5 cut(s) | 650, 699, 1455, 1638, 1734 |
| GlaI | GCGC | 2 cut(s) | 229, 2022 |
| GluI | GCNGC | 2 cut(s) | 206, 1949 |
| GsaI | CCCAGC | 3 cut(s) | 1637, 1646, 1865 |
| HaeIII | GGCC | 4 cut(s) | 834, 1189, 1408, 1461 |
| HapII | CCGG | 4 cut(s) | 56, 414, 683, 1409 |
| HhaI | GCGC | 2 cut(s) | 230, 2023 |
| Hin6I | GCGC | 2 cut(s) | 228, 2021 |
| HinP1I | GCGC | 2 cut(s) | 228, 2021 |
| HincII | GTYRAC | 1 cut(s) | 1601 |
| HindII | GTYRAC | 1 cut(s) | 1601 |
| HpaII | CCGG | 4 cut(s) | 56, 414, 683, 1409 |
| HphI | GGTGA | 5 cut(s) | 175, 208, 548, 1872, 2008 |
| Hpy166II | GTNNAC | 2 cut(s) | 1601, 1609 |
| Hpy188I | TCNGA | 8 cut(s) | 145, 544, 1261, 1266, 1434, 1591, 1761, 1825 |
| Hpy188III | TCNNGA | 5 cut(s) | 683, 725, 953, 1691, 2045 |
| Hpy8I | GTNNAC | 2 cut(s) | 1601, 1609 |
| HpyAV | CCTTC | 8 cut(s) | 187, 328, 358, 592, 789, 908, 1321, 1970 |
| HpyCH4III | ACNGT | 1 cut(s) | 1338 |
| HpyCH4IV | ACGT | 2 cut(s) | 679, 1695 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 225, 664, 2020 |
| HpyF3I | CTNAG | 6 cut(s) | 144, 404, 640, 654, 1625, 1803 |
| HpySE526I | ACGT | 2 cut(s) | 679, 1695 |
| HspAI | GCGC | 2 cut(s) | 228, 2021 |
| Kpn2I | TCCGGA | 1 cut(s) | 682 |
| KroI | GCCGGC | 1 cut(s) | 1408 |
| KroNI | GCCGGC | 1 cut(s) | 1410 |
| Ksp22I | TGATCA | 2 cut(s) | 949, 1261 |
| Kzo9I | GATC | 3 cut(s) | 862, 949, 1261 |
| LguI | GCTCTTC | 1 cut(s) | 696 |
| LmnI | GCTCC | 1 cut(s) | 1003 |
| Lsp1109I | GCAGC | 1 cut(s) | 1960 |
| LweI | GCATC | 4 cut(s) | 43, 495, 773, 1752 |
| MaeI | CTAG | 5 cut(s) | 650, 699, 1455, 1638, 1734 |
| MaeII | ACGT | 2 cut(s) | 679, 1695 |
| MaeIII | GTNAC | 7 cut(s) | 222, 274, 536, 620, 645, 1419, 1555 |
| MalI | GATC | 3 cut(s) | 864, 951, 1263 |
| MbiI | CCGCTC | 1 cut(s) | 1006 |
| MboI | GATC | 3 cut(s) | 862, 949, 1261 |
| MfeI | CAATTG | 3 cut(s) | 315, 1612, 2024 |
| MhlI | GDGCHC | 2 cut(s) | 1042, 1191 |
| MlyI | GAGTC | 1 cut(s) | 533 |
| MmeI | TCCRAC | 2 cut(s) | 1224, 1496 |
| Mph1103I | ATGCAT | 4 cut(s) | 36, 510, 630, 975 |
| MroI | TCCGGA | 1 cut(s) | 682 |
| MroNI | GCCGGC | 1 cut(s) | 1408 |
| MslI | CAYNNNNRTG | 2 cut(s) | 772, 1500 |
| MspI | CCGG | 4 cut(s) | 56, 414, 683, 1409 |
| MspR9I | CCNGG | 4 cut(s) | 51, 415, 806, 2062 |
| MunI | CAATTG | 3 cut(s) | 315, 1612, 2024 |
| Mva1269I | GAATGC | 1 cut(s) | 1487 |
| MvaI | CCWGG | 3 cut(s) | 51, 806, 2062 |
| MvnI | CGCG | 1 cut(s) | 228 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 225, 664, 2020 |
| NaeI | GCCGGC | 1 cut(s) | 1410 |
| NciI | CCSGG | 1 cut(s) | 415 |
| NcoI | CCATGG | 1 cut(s) | 1191 |
| NdeII | GATC | 3 cut(s) | 862, 949, 1261 |
| NgoMIV | GCCGGC | 1 cut(s) | 1408 |
| NlaIV | GGNNCC | 4 cut(s) | 265, 1080, 1188, 1189 |
| NmuCI | GTSAC | 2 cut(s) | 536, 1419 |
| NsiI | ATGCAT | 4 cut(s) | 36, 510, 630, 975 |
| NspI | RCATGY | 3 cut(s) | 628, 977, 1136 |
| NspV | TTCGAA | 1 cut(s) | 191 |
| PciI | ACATGT | 1 cut(s) | 1132 |
| PciSI | GCTCTTC | 1 cut(s) | 696 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1701 |
| PctI | GAATGC | 1 cut(s) | 1487 |
| PdiI | GCCGGC | 1 cut(s) | 1410 |
| PfeI | GAWTC | 9 cut(s) | 442, 559, 670, 1541, 1655, 1788, 1866, 1877, 2048 |
| PfoI | TCCNGGA | 2 cut(s) | 804, 2060 |
| PkrI | GCNGC | 2 cut(s) | 207, 1950 |
| PleI | GAGTC | 1 cut(s) | 533 |
| PpsI | GAGTC | 1 cut(s) | 533 |
| PscI | ACATGT | 1 cut(s) | 1132 |
| PshBI | ATTAAT | 2 cut(s) | 1200, 1773 |
| Psp6I | CCWGG | 3 cut(s) | 49, 804, 2060 |
| PspFI | CCCAGC | 3 cut(s) | 1633, 1642, 1861 |
| PspGI | CCWGG | 3 cut(s) | 49, 804, 2060 |
| PspN4I | GGNNCC | 4 cut(s) | 265, 1080, 1188, 1189 |
| PspOMI | GGGCCC | 1 cut(s) | 1187 |
| PspPI | GGNCC | 4 cut(s) | 53, 832, 1187, 1188 |
| RsaI | GTAC | 3 cut(s) | 172, 212, 994 |
| RsaNI | GTAC | 3 cut(s) | 171, 211, 993 |
| RseI | CAYNNNNRTG | 2 cut(s) | 772, 1500 |
| SalI | GTCGAC | 1 cut(s) | 1599 |
| SapI | GCTCTTC | 1 cut(s) | 696 |
| SatI | GCNGC | 2 cut(s) | 206, 1949 |
| Sau3AI | GATC | 3 cut(s) | 862, 949, 1261 |
| Sau96I | GGNCC | 4 cut(s) | 53, 832, 1187, 1188 |
| SchI | GAGTC | 1 cut(s) | 533 |
| ScrFI | CCNGG | 4 cut(s) | 51, 415, 806, 2062 |
| SduI | GDGCHC | 2 cut(s) | 1042, 1191 |
| SfaNI | GCATC | 4 cut(s) | 43, 495, 773, 1752 |
| SfcI | CTRYAG | 2 cut(s) | 883, 1565 |
| SfuI | TTCGAA | 1 cut(s) | 191 |
| SinI | GGWCC | 1 cut(s) | 53 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 772, 1500 |
| SmlI | CTYRAG | 1 cut(s) | 725 |
| SmoI | CTYRAG | 1 cut(s) | 725 |
| SsiI | CCGC | 5 cut(s) | 206, 556, 1006, 1324, 2039 |
| SspMI | CTAG | 5 cut(s) | 650, 699, 1455, 1638, 1734 |
| StyD4I | CCNGG | 4 cut(s) | 49, 413, 804, 2060 |
| StyI | CCWWGG | 2 cut(s) | 267, 1191 |
| TaaI | ACNGT | 1 cut(s) | 1338 |
| TaiI | ACGT | 2 cut(s) | 682, 1698 |
| TaqI | TCGA | 5 cut(s) | 191, 332, 865, 1600, 1890 |
| TatI | WGTACW | 2 cut(s) | 210, 992 |
| TauI | GCSGC | 1 cut(s) | 208 |
| TfiI | GAWTC | 9 cut(s) | 442, 559, 670, 1541, 1655, 1788, 1866, 1877, 2048 |
| TscAI | CASTG | 5 cut(s) | 129, 444, 569, 858, 2021 |
| TseFI | GTSAC | 2 cut(s) | 536, 1419 |
| TseI | GCWGC | 1 cut(s) | 1948 |
| Tsp45I | GTSAC | 2 cut(s) | 536, 1419 |
| TspDTI | ATGAA | 6 cut(s) | 482, 1130, 1134, 1267, 1451, 1593 |
| TspRI | CASTG | 5 cut(s) | 129, 444, 569, 858, 2021 |
| VpaK11BI | GGWCC | 1 cut(s) | 53 |
| VspI | ATTAAT | 2 cut(s) | 1200, 1773 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 809 |
| XapI | RAATTY | 2 cut(s) | 86, 1049 |
| XceI | RCATGY | 3 cut(s) | 628, 977, 1136 |
| XmiI | GTMKAC | 1 cut(s) | 1600 |
| XspI | CTAG | 5 cut(s) | 650, 699, 1455, 1638, 1734 |
| Zsp2I | ATGCAT | 4 cut(s) | 36, 510, 630, 975 |