Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 580, 816 |
| AccB1I | GGYRCC | 1 cut(s) | 479 |
| AccI | GTMKAC | 1 cut(s) | 654 |
| AccII | CGCG | 1 cut(s) | 432 |
| AciI | CCGC | 2 cut(s) | 432, 435 |
| AclWI | GGATC | 2 cut(s) | 116, 341 |
| AcsI | RAATTY | 2 cut(s) | 242, 838 |
| AcyI | GRCGYC | 1 cut(s) | 480 |
| AfaI | GTAC | 2 cut(s) | 594, 752 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 434, 890 |
| AflIII | ACRYGT | 1 cut(s) | 729 |
| AgsI | TTSAA | 3 cut(s) | 146, 227, 411 |
| AjnI | CCWGG | 2 cut(s) | 627, 796 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 91, 123 |
| AluBI | AGCT | 6 cut(s) | 15, 21, 114, 129, 854, 876 |
| AluI | AGCT | 6 cut(s) | 15, 21, 114, 129, 854, 876 |
| Alw21I | GWGCWC | 1 cut(s) | 878 |
| Alw26I | GTCTC | 1 cut(s) | 257 |
| AlwI | GGATC | 2 cut(s) | 116, 341 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 283 |
| AoxI | GGCC | 2 cut(s) | 3, 755 |
| ApeKI | GCWGC | 2 cut(s) | 536, 854 |
| ApoI | RAATTY | 2 cut(s) | 242, 838 |
| AspLEI | GCGC | 1 cut(s) | 482 |
| AsuHPI | GGTGA | 2 cut(s) | 62, 659 |
| BanI | GGYRCC | 1 cut(s) | 479 |
| BanII | GRGCYC | 1 cut(s) | 878 |
| BauI | CACGAG | 1 cut(s) | 768 |
| BbsI | GAAGAC | 1 cut(s) | 927 |
| Bbv12I | GWGCWC | 1 cut(s) | 878 |
| BbvI | GCAGC | 2 cut(s) | 548, 841 |
| BccI | CCATC | 1 cut(s) | 554 |
| BciT130I | CCWGG | 2 cut(s) | 629, 798 |
| BciVI | GTATCC | 1 cut(s) | 362 |
| BclI | TGATCA | 1 cut(s) | 43 |
| BcoDI | GTCTC | 1 cut(s) | 257 |
| BfaI | CTAG | 2 cut(s) | 111, 702 |
| BfmI | CTRYAG | 2 cut(s) | 10, 855 |
| BfoI | RGCGCY | 1 cut(s) | 483 |
| BfuAI | ACCTGC | 2 cut(s) | 580, 816 |
| BfuI | GTATCC | 1 cut(s) | 362 |
| BisI | GCNGC | 3 cut(s) | 433, 537, 855 |
| BlsI | GCNGC | 3 cut(s) | 434, 538, 856 |
| Bme1390I | CCNGG | 2 cut(s) | 629, 798 |
| BmiI | GGNNCC | 1 cut(s) | 481 |
| BmrFI | CCNGG | 2 cut(s) | 629, 798 |
| BpiI | GAAGAC | 1 cut(s) | 927 |
| BsaBI | GATNNNNATC | 1 cut(s) | 345 |
| BsaHI | GRCGYC | 1 cut(s) | 480 |
| BsaJI | CCNNGG | 4 cut(s) | 584, 628, 723, 928 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 434, 890 |
| Bse1I | ACTGG | 4 cut(s) | 37, 271, 491, 758 |
| Bse3DI | GCAATG | 1 cut(s) | 808 |
| Bse8I | GATNNNNATC | 1 cut(s) | 345 |
| BseBI | CCWGG | 2 cut(s) | 629, 798 |
| BseDI | CCNNGG | 4 cut(s) | 584, 628, 723, 928 |
| BseGI | GGATG | 1 cut(s) | 619 |
| BseJI | GATNNNNATC | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 434, 890 |
| BseMI | GCAATG | 1 cut(s) | 808 |
| BseMII | CTCAG | 2 cut(s) | 290, 297 |
| BseNI | ACTGG | 4 cut(s) | 37, 271, 491, 758 |
| BseRI | GAGGAG | 2 cut(s) | 438, 793 |
| BseXI | GCAGC | 2 cut(s) | 548, 841 |
| BseYI | CCCAGC | 1 cut(s) | 125 |
| Bsh1236I | CGCG | 1 cut(s) | 432 |
| BshFI | GGCC | 2 cut(s) | 5, 757 |
| BshNI | GGYRCC | 1 cut(s) | 479 |
| BsiHKAI | GWGCWC | 1 cut(s) | 878 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 434, 890 |
| BsmAI | GTCTC | 1 cut(s) | 257 |
| BsnI | GGCC | 2 cut(s) | 5, 757 |
| Bsp1286I | GDGCHC | 1 cut(s) | 878 |
| Bsp143I | GATC | 6 cut(s) | 43, 121, 346, 454, 691, 782 |
| Bsp19I | CCATGG | 1 cut(s) | 723 |
| BspACI | CCGC | 2 cut(s) | 432, 435 |
| BspANI | GGCC | 2 cut(s) | 5, 757 |
| BspCNI | CTCAG | 2 cut(s) | 289, 298 |
| BspFNI | CGCG | 1 cut(s) | 432 |
| BspHI | TCATGA | 1 cut(s) | 37 |
| BspLI | GGNNCC | 1 cut(s) | 481 |
| BspMAI | CTGCAG | 1 cut(s) | 859 |
| BspMI | ACCTGC | 2 cut(s) | 580, 816 |
| BspPI | GGATC | 2 cut(s) | 116, 341 |
| BspQI | GCTCTTC | 1 cut(s) | 573 |
| BspT107I | GGYRCC | 1 cut(s) | 479 |
| BsrDI | GCAATG | 1 cut(s) | 808 |
| BsrI | ACTGG | 4 cut(s) | 37, 271, 491, 758 |
| BssECI | CCNNGG | 4 cut(s) | 584, 628, 723, 928 |
| BssMI | GATC | 6 cut(s) | 43, 121, 346, 454, 691, 782 |
| BssNAI | GTATAC | 1 cut(s) | 655 |
| BssNI | GRCGYC | 1 cut(s) | 480 |
| BssSI | CACGAG | 1 cut(s) | 768 |
| BssT1I | CCWWGG | 2 cut(s) | 584, 723 |
| Bst1107I | GTATAC | 1 cut(s) | 655 |
| Bst2BI | CACGAG | 1 cut(s) | 768 |
| Bst2UI | CCWGG | 2 cut(s) | 629, 798 |
| Bst4CI | ACNGT | 2 cut(s) | 362, 387 |
| Bst6I | CTCTTC | 1 cut(s) | 573 |
| BstACI | GRCGYC | 1 cut(s) | 480 |
| BstC8I | GCNNGC | 2 cut(s) | 534, 794 |
| BstDEI | CTNAG | 3 cut(s) | 276, 306, 570 |
| BstDSI | CCRYGG | 1 cut(s) | 723 |
| BstF5I | GGATG | 1 cut(s) | 619 |
| BstFNI | CGCG | 1 cut(s) | 432 |
| BstH2I | RGCGCY | 1 cut(s) | 483 |
| BstHHI | GCGC | 1 cut(s) | 482 |
| BstKTI | GATC | 6 cut(s) | 46, 124, 349, 457, 694, 785 |
| BstMAI | GTCTC | 1 cut(s) | 257 |
| BstMBI | GATC | 6 cut(s) | 43, 121, 346, 454, 691, 782 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 798 |
| BstNI | CCWGG | 2 cut(s) | 629, 798 |
| BstNSI | RCATGY | 1 cut(s) | 733 |
| BstSCI | CCNGG | 2 cut(s) | 627, 796 |
| BstSFI | CTRYAG | 2 cut(s) | 10, 855 |
| BstUI | CGCG | 1 cut(s) | 432 |
| BstV1I | GCAGC | 2 cut(s) | 548, 841 |
| BstV2I | GAAGAC | 1 cut(s) | 927 |
| BstX2I | RGATCY | 1 cut(s) | 121 |
| BstYI | RGATCY | 1 cut(s) | 121 |
| BstZ17I | GTATAC | 1 cut(s) | 655 |
| BsuI | GTATCC | 1 cut(s) | 362 |
| BsuRI | GGCC | 2 cut(s) | 5, 757 |
| BtgI | CCRYGG | 1 cut(s) | 723 |
| BtsCI | GGATG | 1 cut(s) | 619 |
| BveI | ACCTGC | 2 cut(s) | 580, 816 |
| Cac8I | GCNNGC | 2 cut(s) | 534, 794 |
| CaiI | CAGNNNCTG | 1 cut(s) | 283 |
| CciI | TCATGA | 1 cut(s) | 37 |
| CfoI | GCGC | 1 cut(s) | 482 |
| Csp6I | GTAC | 2 cut(s) | 593, 751 |
| CviAII | CATG | 6 cut(s) | 38, 47, 179, 724, 730, 843 |
| CviQI | GTAC | 2 cut(s) | 593, 751 |
| DdeI | CTNAG | 3 cut(s) | 276, 306, 570 |
| DinI | GGCGCC | 1 cut(s) | 481 |
| DpnI | GATC | 6 cut(s) | 45, 123, 348, 456, 693, 784 |
| DpnII | GATC | 6 cut(s) | 43, 121, 346, 454, 691, 782 |
| Eam1104I | CTCTTC | 1 cut(s) | 573 |
| EarI | CTCTTC | 1 cut(s) | 573 |
| Ecl136II | GAGCTC | 1 cut(s) | 876 |
| Eco130I | CCWWGG | 2 cut(s) | 584, 723 |
| Eco24I | GRGCYC | 1 cut(s) | 878 |
| Eco32I | GATATC | 1 cut(s) | 288 |
| Eco53kI | GAGCTC | 1 cut(s) | 876 |
| EcoICRI | GAGCTC | 1 cut(s) | 876 |
| EcoRII | CCWGG | 2 cut(s) | 627, 796 |
| EcoRV | GATATC | 1 cut(s) | 288 |
| EcoT14I | CCWWGG | 2 cut(s) | 584, 723 |
| EcoT38I | GRGCYC | 1 cut(s) | 878 |
| EgeI | GGCGCC | 1 cut(s) | 481 |
| EheI | GGCGCC | 1 cut(s) | 481 |
| ErhI | CCWWGG | 2 cut(s) | 584, 723 |
| FaeI | CATG | 6 cut(s) | 41, 50, 182, 727, 733, 846 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 889, 921 |
| FatI | CATG | 6 cut(s) | 37, 46, 178, 723, 729, 842 |
| FauNDI | CATATG | 1 cut(s) | 886 |
| FbaI | TGATCA | 1 cut(s) | 43 |
| FblI | GTMKAC | 1 cut(s) | 654 |
| Fnu4HI | GCNGC | 3 cut(s) | 433, 537, 855 |
| FokI | GGATG | 1 cut(s) | 626 |
| FriOI | GRGCYC | 1 cut(s) | 878 |
| Fsp4HI | GCNGC | 3 cut(s) | 433, 537, 855 |
| FspBI | CTAG | 2 cut(s) | 111, 702 |
| GlaI | GCGC | 1 cut(s) | 481 |
| GluI | GCNGC | 3 cut(s) | 433, 537, 855 |
| GsaI | CCCAGC | 1 cut(s) | 129 |
| HaeII | RGCGCY | 1 cut(s) | 483 |
| HaeIII | GGCC | 2 cut(s) | 5, 757 |
| HhaI | GCGC | 1 cut(s) | 482 |
| Hin1I | GRCGYC | 1 cut(s) | 480 |
| Hin1II | CATG | 6 cut(s) | 41, 50, 182, 727, 733, 846 |
| Hin6I | GCGC | 1 cut(s) | 480 |
| HinP1I | GCGC | 1 cut(s) | 480 |
| HinfI | GANTC | 5 cut(s) | 89, 223, 274, 380, 739 |
| HphI | GGTGA | 2 cut(s) | 62, 659 |
| Hpy166II | GTNNAC | 3 cut(s) | 205, 395, 655 |
| Hpy188I | TCNGA | 2 cut(s) | 135, 285 |
| Hpy188III | TCNNGA | 3 cut(s) | 38, 452, 770 |
| Hpy8I | GTNNAC | 3 cut(s) | 205, 395, 655 |
| HpyAV | CCTTC | 4 cut(s) | 410, 417, 818, 822 |
| HpyCH4III | ACNGT | 2 cut(s) | 362, 387 |
| HpyCH4V | TGCA | 2 cut(s) | 599, 857 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 798 |
| HpyF3I | CTNAG | 3 cut(s) | 276, 306, 570 |
| Hsp92I | GRCGYC | 1 cut(s) | 480 |
| Hsp92II | CATG | 6 cut(s) | 41, 50, 182, 727, 733, 846 |
| HspAI | GCGC | 1 cut(s) | 480 |
| KasI | GGCGCC | 1 cut(s) | 479 |
| Ksp22I | TGATCA | 1 cut(s) | 43 |
| Kzo9I | GATC | 6 cut(s) | 43, 121, 346, 454, 691, 782 |
| LguI | GCTCTTC | 1 cut(s) | 573 |
| LmnI | GCTCC | 4 cut(s) | 20, 100, 851, 873 |
| Lsp1109I | GCAGC | 2 cut(s) | 548, 841 |
| MaeI | CTAG | 2 cut(s) | 111, 702 |
| MaeIII | GTNAC | 1 cut(s) | 271 |
| MalI | GATC | 6 cut(s) | 45, 123, 348, 456, 693, 784 |
| MboI | GATC | 6 cut(s) | 43, 121, 346, 454, 691, 782 |
| MboII | GAAGA | 4 cut(s) | 131, 587, 590, 932 |
| MfeI | CAATTG | 2 cut(s) | 516, 600 |
| MflI | RGATCY | 1 cut(s) | 121 |
| MhlI | GDGCHC | 1 cut(s) | 878 |
| Mly113I | GGCGCC | 1 cut(s) | 480 |
| MlyI | GAGTC | 2 cut(s) | 268, 748 |
| MmeI | TCCRAC | 1 cut(s) | 374 |
| MnlI | CCTC | 9 cut(s) | 76, 208, 438, 454, 459, 643, 674, 771, 923 |
| MseI | TTAA | 2 cut(s) | 62, 312 |
| MslI | CAYNNNNRTG | 1 cut(s) | 728 |
| MspR9I | CCNGG | 2 cut(s) | 629, 798 |
| MunI | CAATTG | 2 cut(s) | 516, 600 |
| MvaI | CCWGG | 2 cut(s) | 629, 798 |
| MvnI | CGCG | 1 cut(s) | 432 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 798 |
| NarI | GGCGCC | 1 cut(s) | 480 |
| NcoI | CCATGG | 1 cut(s) | 723 |
| NdeI | CATATG | 1 cut(s) | 886 |
| NdeII | GATC | 6 cut(s) | 43, 121, 346, 454, 691, 782 |
| NlaIII | CATG | 6 cut(s) | 41, 50, 182, 727, 733, 846 |
| NlaIV | GGNNCC | 1 cut(s) | 481 |
| NmuCI | GTSAC | 1 cut(s) | 271 |
| NspI | RCATGY | 1 cut(s) | 733 |
| PagI | TCATGA | 1 cut(s) | 37 |
| PciI | ACATGT | 1 cut(s) | 729 |
| PciSI | GCTCTTC | 1 cut(s) | 573 |
| PfeI | GAWTC | 3 cut(s) | 89, 223, 380 |
| PkrI | GCNGC | 3 cut(s) | 434, 538, 856 |
| PleI | GAGTC | 2 cut(s) | 268, 747 |
| PluTI | GGCGCC | 1 cut(s) | 483 |
| PpsI | GAGTC | 2 cut(s) | 268, 747 |
| PscI | ACATGT | 1 cut(s) | 729 |
| Psp124BI | GAGCTC | 1 cut(s) | 878 |
| Psp6I | CCWGG | 2 cut(s) | 627, 796 |
| PspFI | CCCAGC | 1 cut(s) | 125 |
| PspGI | CCWGG | 2 cut(s) | 627, 796 |
| PspN4I | GGNNCC | 1 cut(s) | 481 |
| PstI | CTGCAG | 1 cut(s) | 859 |
| PstNI | CAGNNNCTG | 1 cut(s) | 283 |
| PsuI | RGATCY | 1 cut(s) | 121 |
| RsaI | GTAC | 2 cut(s) | 594, 752 |
| RsaNI | GTAC | 2 cut(s) | 593, 751 |
| RseI | CAYNNNNRTG | 1 cut(s) | 728 |
| SacI | GAGCTC | 1 cut(s) | 878 |
| SapI | GCTCTTC | 1 cut(s) | 573 |
| SaqAI | TTAA | 2 cut(s) | 62, 312 |
| SatI | GCNGC | 3 cut(s) | 433, 537, 855 |
| Sau3AI | GATC | 6 cut(s) | 43, 121, 346, 454, 691, 782 |
| SchI | GAGTC | 2 cut(s) | 268, 748 |
| ScrFI | CCNGG | 2 cut(s) | 629, 798 |
| SduI | GDGCHC | 1 cut(s) | 878 |
| SfcI | CTRYAG | 2 cut(s) | 10, 855 |
| SfoI | GGCGCC | 1 cut(s) | 481 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 728 |
| SsiI | CCGC | 2 cut(s) | 432, 435 |
| SspDI | GGCGCC | 1 cut(s) | 479 |
| SspMI | CTAG | 2 cut(s) | 111, 702 |
| SstI | GAGCTC | 1 cut(s) | 878 |
| StyD4I | CCNGG | 2 cut(s) | 627, 796 |
| StyI | CCWWGG | 2 cut(s) | 584, 723 |
| TaaI | ACNGT | 2 cut(s) | 362, 387 |
| TaqI | TCGA | 3 cut(s) | 221, 694, 785 |
| TauI | GCSGC | 1 cut(s) | 435 |
| TfiI | GAWTC | 3 cut(s) | 89, 223, 380 |
| Tru1I | TTAA | 2 cut(s) | 62, 312 |
| Tru9I | TTAA | 2 cut(s) | 62, 312 |
| TseFI | GTSAC | 1 cut(s) | 271 |
| TseI | GCWGC | 2 cut(s) | 536, 854 |
| Tsp45I | GTSAC | 1 cut(s) | 271 |
| TspDTI | ATGAA | 7 cut(s) | 132, 264, 429, 525, 831, 849, 933 |
| XapI | RAATTY | 2 cut(s) | 242, 838 |
| XceI | RCATGY | 1 cut(s) | 733 |
| XmiI | GTMKAC | 1 cut(s) | 654 |
| XspI | CTAG | 2 cut(s) | 111, 702 |