ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 575 |
| AclWI | GGATC | 1 cut(s) | 648 |
| AcsI | RAATTY | 1 cut(s) | 377 |
| AcuI | CTGAAG | 1 cut(s) | 485 |
| AcyI | GRCGYC | 1 cut(s) | 362 |
| AfaI | GTAC | 1 cut(s) | 96 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 35, 575 |
| AgsI | TTSAA | 1 cut(s) | 155 |
| AleI | CACNNNNGTG | 1 cut(s) | 683 |
| AluBI | AGCT | 5 cut(s) | 268, 431, 446, 563, 659 |
| AluI | AGCT | 5 cut(s) | 268, 431, 446, 563, 659 |
| Alw21I | GWGCWC | 2 cut(s) | 204, 238 |
| Alw26I | GTCTC | 1 cut(s) | 98 |
| Alw44I | GTGCAC | 2 cut(s) | 200, 234 |
| AlwI | GGATC | 1 cut(s) | 648 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 244 |
| Ama87I | CYCGRG | 1 cut(s) | 636 |
| AoxI | GGCC | 1 cut(s) | 511 |
| ApaLI | GTGCAC | 2 cut(s) | 200, 234 |
| ApoI | RAATTY | 1 cut(s) | 377 |
| AseI | ATTAAT | 1 cut(s) | 471 |
| AspS9I | GGNCC | 2 cut(s) | 566, 768 |
| AsuHPI | GGTGA | 1 cut(s) | 130 |
| AsuII | TTCGAA | 1 cut(s) | 50 |
| AvaI | CYCGRG | 1 cut(s) | 636 |
| AvaII | GGWCC | 2 cut(s) | 566, 768 |
| AxyI | CCTNAGG | 1 cut(s) | 515 |
| BaeGI | GKGCMC | 2 cut(s) | 204, 238 |
| Bbv12I | GWGCWC | 2 cut(s) | 204, 238 |
| BccI | CCATC | 4 cut(s) | 37, 123, 363, 498 |
| BceAI | ACGGC | 1 cut(s) | 220 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 162, 196 |
| BciVI | GTATCC | 1 cut(s) | 749 |
| BcoDI | GTCTC | 1 cut(s) | 98 |
| BfaI | CTAG | 2 cut(s) | 590, 656 |
| BfmI | CTRYAG | 2 cut(s) | 108, 184 |
| BfuI | GTATCC | 1 cut(s) | 749 |
| Bme18I | GGWCC | 2 cut(s) | 566, 768 |
| BmeT110I | CYCGRG | 1 cut(s) | 636 |
| BmgT120I | GGNCC | 2 cut(s) | 566, 768 |
| BmiI | GGNNCC | 2 cut(s) | 320, 769 |
| BoxI | GACNNNNGTC | 2 cut(s) | 110, 361 |
| Bpu14I | TTCGAA | 1 cut(s) | 50 |
| BpuEI | CTTGAG | 1 cut(s) | 177 |
| BsaHI | GRCGYC | 1 cut(s) | 362 |
| BsaJI | CCNNGG | 2 cut(s) | 33, 678 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 35, 575 |
| Bse1I | ACTGG | 1 cut(s) | 363 |
| Bse21I | CCTNAGG | 1 cut(s) | 515 |
| BseDI | CCNNGG | 2 cut(s) | 33, 678 |
| BseGI | GGATG | 3 cut(s) | 29, 538, 753 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 35, 575 |
| BseMII | CTCAG | 2 cut(s) | 269, 506 |
| BseNI | ACTGG | 1 cut(s) | 363 |
| BseRI | GAGGAG | 1 cut(s) | 438 |
| BseSI | GKGCMC | 2 cut(s) | 204, 238 |
| BsgI | GTGCAG | 1 cut(s) | 707 |
| BshFI | GGCC | 1 cut(s) | 513 |
| BsiHKAI | GWGCWC | 2 cut(s) | 204, 238 |
| BsiHKCI | CYCGRG | 1 cut(s) | 636 |
| BslFI | GGGAC | 1 cut(s) | 369 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 35, 575 |
| BsmAI | GTCTC | 1 cut(s) | 98 |
| BsmFI | GGGAC | 1 cut(s) | 369 |
| BsmI | GAATGC | 1 cut(s) | 619 |
| BsnI | GGCC | 1 cut(s) | 513 |
| BsoBI | CYCGRG | 1 cut(s) | 636 |
| Bsp119I | TTCGAA | 1 cut(s) | 50 |
| Bsp1286I | GDGCHC | 2 cut(s) | 204, 238 |
| Bsp143I | GATC | 1 cut(s) | 640 |
| BspANI | GGCC | 1 cut(s) | 513 |
| BspCNI | CTCAG | 2 cut(s) | 268, 507 |
| BspLI | GGNNCC | 2 cut(s) | 320, 769 |
| BspPI | GGATC | 1 cut(s) | 648 |
| BspQI | GCTCTTC | 1 cut(s) | 171 |
| BspT104I | TTCGAA | 1 cut(s) | 50 |
| BsrI | ACTGG | 1 cut(s) | 363 |
| BssECI | CCNNGG | 2 cut(s) | 33, 678 |
| BssMI | GATC | 1 cut(s) | 640 |
| BssNI | GRCGYC | 1 cut(s) | 362 |
| BssT1I | CCWWGG | 1 cut(s) | 33 |
| Bst4CI | ACNGT | 4 cut(s) | 101, 112, 273, 457 |
| Bst6I | CTCTTC | 2 cut(s) | 47, 171 |
| BstACI | GRCGYC | 1 cut(s) | 362 |
| BstBI | TTCGAA | 1 cut(s) | 50 |
| BstC8I | GCNNGC | 1 cut(s) | 597 |
| BstDEI | CTNAG | 2 cut(s) | 255, 515 |
| BstDSI | CCRYGG | 1 cut(s) | 678 |
| BstF5I | GGATG | 3 cut(s) | 29, 538, 753 |
| BstKTI | GATC | 1 cut(s) | 643 |
| BstMAI | GTCTC | 1 cut(s) | 98 |
| BstMBI | GATC | 1 cut(s) | 640 |
| BstNSI | RCATGY | 2 cut(s) | 599, 615 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 110, 361 |
| BstSFI | CTRYAG | 2 cut(s) | 108, 184 |
| BstSLI | GKGCMC | 2 cut(s) | 204, 238 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 373 |
| Bsu36I | CCTNAGG | 1 cut(s) | 515 |
| BsuI | GTATCC | 1 cut(s) | 749 |
| BsuRI | GGCC | 1 cut(s) | 513 |
| BtgI | CCRYGG | 1 cut(s) | 678 |
| BtgZI | GCGATG | 2 cut(s) | 222, 476 |
| BtsCI | GGATG | 3 cut(s) | 29, 538, 753 |
| BtsI | GCAGTG | 1 cut(s) | 695 |
| BtsIMutI | CAGTG | 3 cut(s) | 106, 146, 695 |
| Cac8I | GCNNGC | 1 cut(s) | 597 |
| CaiI | CAGNNNCTG | 1 cut(s) | 244 |
| Cfr13I | GGNCC | 2 cut(s) | 566, 768 |
| CseI | GACGC | 2 cut(s) | 344, 351 |
| Csp6I | GTAC | 1 cut(s) | 95 |
| CviAII | CATG | 3 cut(s) | 596, 612, 644 |
| CviJI | RGCY | 9 cut(s) | 47, 248, 268, 431, 446, 485, 513, 563, 659 |
| CviKI_1 | RGCY | 9 cut(s) | 47, 248, 268, 431, 446, 485, 513, 563, 659 |
| CviQI | GTAC | 1 cut(s) | 95 |
| DdeI | CTNAG | 2 cut(s) | 255, 515 |
| DpnI | GATC | 1 cut(s) | 642 |
| DpnII | GATC | 1 cut(s) | 640 |
| Eam1104I | CTCTTC | 2 cut(s) | 47, 171 |
| EarI | CTCTTC | 2 cut(s) | 47, 171 |
| Eco130I | CCWWGG | 1 cut(s) | 33 |
| Eco147I | AGGCCT | 1 cut(s) | 513 |
| Eco47I | GGWCC | 2 cut(s) | 566, 768 |
| Eco57I | CTGAAG | 1 cut(s) | 485 |
| Eco81I | CCTNAGG | 1 cut(s) | 515 |
| Eco88I | CYCGRG | 1 cut(s) | 636 |
| EcoT14I | CCWWGG | 1 cut(s) | 33 |
| ErhI | CCWWGG | 1 cut(s) | 33 |
| FaeI | CATG | 3 cut(s) | 599, 615, 647 |
| FaiI | YATR | 9 cut(s) | 88, 186, 292, 548, 597, 613, 645, 653, 743 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 31, 63 |
| FaqI | GGGAC | 1 cut(s) | 369 |
| FatI | CATG | 3 cut(s) | 595, 611, 643 |
| FokI | GGATG | 3 cut(s) | 16, 545, 760 |
| FspBI | CTAG | 2 cut(s) | 590, 656 |
| HaeIII | GGCC | 1 cut(s) | 513 |
| HgaI | GACGC | 2 cut(s) | 344, 351 |
| Hin1I | GRCGYC | 1 cut(s) | 362 |
| Hin1II | CATG | 3 cut(s) | 599, 615, 647 |
| HincII | GTYRAC | 1 cut(s) | 695 |
| HindII | GTYRAC | 1 cut(s) | 695 |
| HinfI | GANTC | 2 cut(s) | 68, 151 |
| HphI | GGTGA | 1 cut(s) | 130 |
| Hpy166II | GTNNAC | 4 cut(s) | 97, 202, 236, 695 |
| Hpy188I | TCNGA | 3 cut(s) | 453, 465, 504 |
| Hpy188III | TCNNGA | 4 cut(s) | 17, 366, 590, 638 |
| Hpy8I | GTNNAC | 4 cut(s) | 97, 202, 236, 695 |
| HpyAV | CCTTC | 2 cut(s) | 289, 496 |
| HpyCH4III | ACNGT | 4 cut(s) | 101, 112, 273, 457 |
| HpyCH4V | TGCA | 6 cut(s) | 123, 202, 236, 397, 599, 688 |
| HpyF3I | CTNAG | 2 cut(s) | 255, 515 |
| Hsp92I | GRCGYC | 1 cut(s) | 362 |
| Hsp92II | CATG | 3 cut(s) | 599, 615, 647 |
| Kzo9I | GATC | 1 cut(s) | 640 |
| LguI | GCTCTTC | 1 cut(s) | 171 |
| LmnI | GCTCC | 2 cut(s) | 451, 560 |
| LpnPI | CCDG | 9 cut(s) | 224, 230, 344, 379, 402, 527, 549, 561, 720 |
| MaeI | CTAG | 2 cut(s) | 590, 656 |
| MaeIII | GTNAC | 1 cut(s) | 332 |
| MalI | GATC | 1 cut(s) | 642 |
| MboI | GATC | 1 cut(s) | 640 |
| MboII | GAAGA | 5 cut(s) | 64, 158, 161, 478, 488 |
| MfeI | CAATTG | 1 cut(s) | 74 |
| MhlI | GDGCHC | 2 cut(s) | 204, 238 |
| MluCI | AATT | 4 cut(s) | 74, 142, 377, 391 |
| MmeI | TCCRAC | 3 cut(s) | 354, 476, 606 |
| MnlI | CCTC | 8 cut(s) | 85, 201, 459, 503, 510, 522, 595, 738 |
| MseI | TTAA | 4 cut(s) | 224, 411, 471, 699 |
| MslI | CAYNNNNRTG | 2 cut(s) | 207, 683 |
| MunI | CAATTG | 1 cut(s) | 74 |
| Mva1269I | GAATGC | 1 cut(s) | 619 |
| NdeII | GATC | 1 cut(s) | 640 |
| NlaIII | CATG | 3 cut(s) | 599, 615, 647 |
| NlaIV | GGNNCC | 2 cut(s) | 320, 769 |
| NmuCI | GTSAC | 1 cut(s) | 332 |
| NspI | RCATGY | 2 cut(s) | 599, 615 |
| NspV | TTCGAA | 1 cut(s) | 50 |
| OliI | CACNNNNGTG | 1 cut(s) | 683 |
| PaeI | GCATGC | 1 cut(s) | 599 |
| PceI | AGGCCT | 1 cut(s) | 513 |
| PciSI | GCTCTTC | 1 cut(s) | 171 |
| PctI | GAATGC | 1 cut(s) | 619 |
| PfeI | GAWTC | 2 cut(s) | 68, 151 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 575 |
| PshAI | GACNNNNGTC | 2 cut(s) | 110, 361 |
| PshBI | ATTAAT | 1 cut(s) | 471 |
| PspN4I | GGNNCC | 2 cut(s) | 320, 769 |
| PspPI | GGNCC | 2 cut(s) | 566, 768 |
| PstNI | CAGNNNCTG | 1 cut(s) | 244 |
| RsaI | GTAC | 1 cut(s) | 96 |
| RsaNI | GTAC | 1 cut(s) | 95 |
| RseI | CAYNNNNRTG | 2 cut(s) | 207, 683 |
| SapI | GCTCTTC | 1 cut(s) | 171 |
| SaqAI | TTAA | 4 cut(s) | 224, 411, 471, 699 |
| Sau3AI | GATC | 1 cut(s) | 640 |
| Sau96I | GGNCC | 2 cut(s) | 566, 768 |
| SduI | GDGCHC | 2 cut(s) | 204, 238 |
| SfcI | CTRYAG | 2 cut(s) | 108, 184 |
| SfuI | TTCGAA | 1 cut(s) | 50 |
| SinI | GGWCC | 2 cut(s) | 566, 768 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 207, 683 |
| SmlI | CTYRAG | 1 cut(s) | 192 |
| SmoI | CTYRAG | 1 cut(s) | 192 |
| SphI | GCATGC | 1 cut(s) | 599 |
| Sse9I | AATT | 4 cut(s) | 74, 142, 377, 391 |
| SseBI | AGGCCT | 1 cut(s) | 513 |
| SspMI | CTAG | 2 cut(s) | 590, 656 |
| StuI | AGGCCT | 1 cut(s) | 513 |
| StyI | CCWWGG | 1 cut(s) | 33 |
| TaaI | ACNGT | 4 cut(s) | 101, 112, 273, 457 |
| TaqI | TCGA | 2 cut(s) | 50, 172 |
| TasI | AATT | 4 cut(s) | 74, 142, 377, 391 |
| TfiI | GAWTC | 2 cut(s) | 68, 151 |
| Tru1I | TTAA | 4 cut(s) | 224, 411, 471, 699 |
| Tru9I | TTAA | 4 cut(s) | 224, 411, 471, 699 |
| TscAI | CASTG | 3 cut(s) | 106, 153, 695 |
| TseFI | GTSAC | 1 cut(s) | 332 |
| Tsp45I | GTSAC | 1 cut(s) | 332 |
| TspDTI | ATGAA | 5 cut(s) | 425, 489, 495, 549, 640 |
| TspGWI | ACGGA | 1 cut(s) | 695 |
| TspRI | CASTG | 3 cut(s) | 106, 153, 695 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 575 |
| VneI | GTGCAC | 2 cut(s) | 200, 234 |
| VpaK11BI | GGWCC | 2 cut(s) | 566, 768 |
| VspI | ATTAAT | 1 cut(s) | 471 |
| XapI | RAATTY | 1 cut(s) | 377 |
| XbaI | TCTAGA | 1 cut(s) | 589 |
| XceI | RCATGY | 2 cut(s) | 599, 615 |
| XspI | CTAG | 2 cut(s) | 590, 656 |